Xenorhabdus nematophila ATCC 19061: XNC1_2721
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Entry
XNC1_2721 CDS
T01274
Symbol
mfd
Name
(GenBank) transcription-repair ATP-dependent coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
xne
Xenorhabdus nematophila ATCC 19061
Pathway
xne03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
xne00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
XNC1_2721 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
xne03400
]
XNC1_2721 (mfd)
Enzymes [BR:
xne01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
XNC1_2721 (mfd)
DNA repair and recombination proteins [BR:
xne03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
XNC1_2721 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
MFD_D3
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
UB2H
ERCC3_RAD25_C
RecG_dom3_C
Rabaptin
Motif
Other DBs
NCBI-ProteinID:
CBJ90775
UniProt:
D3VID5
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All DBs
Position
2694057..2697503
Genome browser
AA seq
1148 aa
AA seq
DB search
MSAKYRYQLPERRGDTRQLGHLTGAACAVECAEIIDRYSGPILLVTKDMQNALRLRDEIQ
QFTRAPINMMSDWETLPYDSFSPHQEIISNRLSTLYHLPSMTKGALILPVNTLMQRVCPH
EYLKGHALVMNKKQHLSRDKLRAELEQAGYRCVEQVLEHGEFATRGALFDLFPMGSEHPY
RIDFFDDEIDSLRTFDVDTQRTLAEVEKISLLPAHEFPTSQEAIELFRSQWREQFEVRRD
AEHIYQQVSKKVLPAGIEYWQPLFFEQPLPSIFDYLPENTLCITQDLINAAERFWQDTGQ
RFDSRKVDPMRPLLSPEQIWLPVNKLFSELKNWPRIQVDNETLPQKAGNTNLAYQALPDL
SISAQQKAPLDKLRRFMEQFNGKIVFSVESEGRRESVQDLLSRIKVNPIKINHLTDANHS
GHFLMIGAAEHGFVDENNKLALICESDMLGERVSRRRQDNRRTINTDTLIRNLAELRQGQ
PVVHLDHGVGRYQGLTTLEAGGIKAEYLILTYAGEDKLYVPVSSLHLISRYVGGAEESAP
LHKLGGEAWSKARQKAAEKVRDVAAELLDVYAQRAVRPGFAFTNDREQYQLFCQSFPFDT
TPDQEQTINAVLDDMCQPIAMDRLVCGDVGFGKTEVAMRAAFLSIINNKQVAVLVPTTLL
AQQHYDNFRDRFANWPVHIEVMSRFRSVREQQQVIDMAAEGKVDIIIGTHKLLQSDLCWK
DLGLLIVDEEHRFGVRHKERIKAIRADVDVLTLTATPIPRTLNMAMSGMRDLSIIATPPA
RRLAVKTFVREYDSLVVRESILREILRGGQVYYLYNDVENIEKTRARLEELVPEARIVVG
HGQMRERDLERVMTDFHHQRFNVLVCTTIIETGIDIPSANTIIIERADHLGLAQLHQLRG
RVGRSHHQAYAYLLTPHPKAMTKDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELLGE
DQSGQMASIGFTLYMELLESAVDALKHGREPSLEDLSNSQTDIELRMPVLLPDDYIPDVN
MRLSFYKRIASARDDAELDELKIELIDRFGLLPDPGRHLLQSASIRLLAQKLGIKRIEAH
EKGGFIEFGNHNKVDPNYLIGLLQTQPNVYRLDGSSKLKFITELTERTTRLAFIQKLLEI
FEQHQIDT
NT seq
3447 nt
NT seq
+upstream
nt +downstream
nt
atgtcagcaaaatatcgttatcaacttcctgaacgtcgcggggatacccgccaattaggc
catttaactggtgctgcttgtgctgttgaatgcgcagaaattattgatcgctactcaggg
ccaatactgctggtgacaaaagatatgcagaatgccctacgattacgtgacgaaattcaa
caattcacccgcgccccaataaatatgatgtcagattgggagacattaccttacgatagt
ttttctccacatcaagaaattatttccaaccgtttatccacactctatcacttaccctca
atgacaaaaggtgcgttaatcttgcccgtcaatacgttaatgcaacgtgtttgcccgcat
gagtaccttaaaggtcatgctctggtgatgaacaaaaaacagcatctttcccgcgataaa
ctgcgggcagagctggagcaagcaggttatcgctgcgttgaacaagtccttgaacatggc
gaatttgcgacccggggggccttgtttgatttattcccgatgggtagtgagcacccttat
cgcattgatttttttgatgatgaaatcgacagtctgcgcacctttgatgtggatactcaa
cgaacattggcagaagtggaaaaaatcagtttattgccagctcatgaatttccaaccagt
caagaagccattgagctattccgcagccaatggcgagagcagttcgaagtgcgccgcgat
gctgagcatatttatcaacaggtcagtaaaaaagtgcttccagccggtattgaatattgg
caaccgttgttctttgaacagcccttaccttccatttttgattatctccctgaaaatacg
ctatgtattacacaagatttaatcaacgccgcagaacgattctggcaagacacaggacaa
cgctttgacagtcgtaaagtcgatcctatgcgcccattgctttcacctgagcaaatttgg
ttacctgttaacaaattattctcagaattgaaaaactggcctcgtattcaagttgacaac
gaaacactcccccaaaaagcaggaaatactaatcttgcttatcaagcgttacctgattta
tcaatttctgcccagcaaaaagcgccattggataaacttcgccgcttcatggagcagttt
aacggtaaaatcgtgttctccgttgaaagtgaaggacgccgagaatcggtgcaagactta
ctatcacgtattaaagtcaatccgataaaaataaatcacttaaccgatgccaatcattcc
ggtcatttcttaatgattggggcggcggaacacggttttgtcgatgaaaacaataaactc
gctctgatttgtgaaagtgacatgctcggagagcgtgtcagccgtcgccgccaggataat
cgccgtaccatcaatacggatacactcatccgtaatcttgctgaattacgtcaaggtcaa
ccggttgttcaccttgatcatggtgtcggtcgctatcaaggattaacaacgctggaagca
ggtggtattaaagccgagtaccttattctgacctacgctggagaagataaactttatgtg
ccggtttcttctcttcatctcatcagccgttatgtggggggtgcggaagaaagtgcacca
ctgcataagctgggcggagaagcatggagcaaagctcgccaaaaagcggctgaaaaagtg
cgtgatgttgcagcagaattattggatgtgtacgcacagcgtgcggttagaccgggtttt
gccttcacaaacgatcgggaacaatatcaactgttctgccaaagtttcccattcgatact
acccccgatcaagaacagacgatcaatgctgtacttgacgatatgtgccaacccattgcg
atggataggctggtgtgtggcgatgtcgggtttggaaaaacagaagtcgcaatgcgcgca
gcatttttatccatcatcaataataaacaagttgccgtgcttgtaccgacaacgctgtta
gcacagcaacattatgataatttccgggatcgctttgcaaactggccagtgcatattgaa
gttatgtcgcgtttccgcagtgtcagggaacagcaacaggtcattgatatggctgctgaa
ggaaaagtggatattattattggtacccataaactcctgcaaagtgatctatgttggaaa
gatctcggtttattgatcgttgatgaagaacaccgcttcggggttcgccataaagagcga
attaaagccatccgtgctgatgttgatgtcttgaccctgactgcaaccccaatccctcgt
acacttaatatggcaatgagcggtatgcgtgatttgtcgattattgctactccccctgcc
cgtcgcttagccgtaaaaacctttgtacgtgaatatgatagcctcgtcgttcgtgaatct
atcctgcgtgaaatcttacgtggcggacaagtttattatctgtataacgatgtcgaaaat
atcgagaaaaccagagcccggttggaagaactcgttcccgaagccagaatcgttgtaggt
catggacaaatgcgtgaacgtgacttggagcgcgtaatgacggatttccatcaccaacgt
tttaatgtactggtatgtactaccattattgaaacagggatcgatattcccagcgccaat
actattattattgaacgcgctgaccatttggggctggctcaattacatcagttacgaggg
cgagtcgggcgctcccatcatcaagcctatgcttatttactgacaccgcatccaaaagca
atgaccaaagatgcgcaaaaacggttagaagcgattgcttcccttgaagatttaggtgct
ggttttgcgctggcgactcacgatttagaaattcggggagcaggtgaattactgggcgaa
gatcaaagtggacagatggccagtattggtttcaccctctatatggaattattggaaagt
gcggttgatgcccttaagcatggccgtgaaccctcacttgaagatttgagcaatagtcag
actgatatcgagctgcgcatgccagttctgctacctgatgactatattcctgatgtgaat
atgcggctatccttctataaacgtattgccagcgcacgggatgatgctgagctggatgaa
ttgaaaatcgaacttattgatcgatttggcttactgcccgatccaggacgtcacttgtta
caatcggcttccattcgcctgttagctcagaaattgggtatcaaacgtattgaagcccat
gaaaaaggaggcttcattgagtttggtaatcacaataaggtcgatcccaattatttaatt
ggcttattacagacacaacccaatgtttatcggctggatggctcctctaaactgaaattt
attactgagttaactgaacggacgacccgattagcctttatccagaaattattggaaatt
ttcgaacaacatcagatcgatacctaa
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