Xenorhabdus nematophila ATCC 19061: XNC1_4380
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Entry
XNC1_4380 CDS
T01274
Symbol
rpoC
Name
(GenBank) RNA polymerase, beta prime subunit
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
xne
Xenorhabdus nematophila ATCC 19061
Pathway
xne03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
xne00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
XNC1_4380 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
xne03021
]
XNC1_4380 (rpoC)
03400 DNA repair and recombination proteins [BR:
xne03400
]
XNC1_4380 (rpoC)
Enzymes [BR:
xne01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
XNC1_4380 (rpoC)
Transcription machinery [BR:
xne03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
XNC1_4380 (rpoC)
DNA repair and recombination proteins [BR:
xne03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
XNC1_4380 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-ProteinID:
CBJ92402
UniProt:
D3VEF1
LinkDB
All DBs
Position
4207188..4211414
Genome browser
AA seq
1408 aa
AA seq
DB search
MKDLLKFLKAQTKTEEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCAR
IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSL
PSRIGLLLDMPLRDIERVLYFESYVVVEGGMTSLERSQILTEEQYLDALEEFGDEFDAKM
GAEAIQSLLKNMDLENECETLREELNETNSETKRKKLTKRIKLLEAFIQSGNKPEWMVLT
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQ
EAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPY
LRLHQCGLPKKMALELFKPFIYGKLELRGLATTIKAAKKMVEREEAVVWDILDEVIREHP
VLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA
RALMMSTNNILSPASGEPIIVPSQDVVLGLYYMTRDCVNAKGEGMVLSGPKEAERVYRAG
LASLHARVKVRITEEVRDGEGNVTVNTGLVDTTVGRAILWMIVPRGLPYSLINQALGKKA
ISRMLNTCYRVLGLKPTVILADQTMYTGFAYAARSGVSVGIDDMVIPEKKEGIIAEAEAE
VAEIQEQFQSGLVTAGERYNKVIDIWAAANERVAKAMMENLSTETVINRNGEEEQQVSFN
NIFMMADSGARGSAAQIRQLAGMRGLMATPDGSIIETPITANFREGLNVLQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHDGILMTPVIEGGDVKEPLRERVL
GRVTAEDVLKPGTADILVERNTLLNEKWCDLLEENSVDSVKVRSVVSCETDFGVCANCYG
RDLARGHRINKGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAESSIQVRNKGQLKL
SNAKFVTNSAGKLVITSRNTELRLIDDFGRTKESYKVPYGSVLAKGDGEKVTGGETVANW
DPHTMPVVSEVSGIIQFYDMVDGQTITRQTDELTGLSSLVVLDSAERTGSGKDLRPALKI
VDAQGNDVLIPGTDMPAQYFLPGKAIVQLEDGISISAGDTLARIPQESGGTKDITGGLPR
VADLFEARRPKEPAILAEISGIVSFGKETKGKRRLVISPLDGSDAYEEMIPKWRQLNVFE
GEVVERGDVISDGPESPHDILRLRGVHAVARYITNEVQEVYRLQGVKINDKHIEVIVRQM
LRKATIASAGSSEFLEGEQVEYARVKVANRKLEQDGKVPATFHRDLLGITKASLATESFI
SAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYAYHQARIRRRHENEVVE
APQVSVDEATANLAELLNAGFGNSSDND
NT seq
4227 nt
NT seq
+upstream
nt +downstream
nt
gtgaaagacttattgaagtttctgaaagcgcaaactaagaccgaagagtttgatgcgatc
aaaattgctctggcctctccagatatgatccgttcgtggtcattcggggaagtaaaaaag
ccggaaaccattaactaccgtacgttcaaacctgagcgtgacggtcttttctgtgcgcgt
attttcgggccagtaaaagattacgaatgcttgtgtggtaaatacaagcgtttaaaacac
cgtggtgtgatttgtgagaagtgtggcgttgaagtcacccagactaaagttcgtcgtgaa
cgtatgggtcacatcgagctggcttctccaaccgctcacatttggttcctgaaatctctg
ccatcccgcatcggtttgttgctggatatgcctctgcgcgacattgaacgcgtactgtat
ttcgaatcctatgtggttgttgaaggcggcatgaccagccttgagcgtagccaaatcctg
actgaagaacagtatctggatgcactggaagagttcggtgacgaatttgacgcaaaaatg
ggtgcagaagcgatccaatctttgttgaaaaacatggatctggaaaacgaatgtgaaact
ttgcgtgaagagctgaatgaaaccaactctgaaaccaagcgcaaaaagctgaccaagcgt
attaaactgctggaagctttcattcagtctggtaacaaacctgaatggatggttctgacc
gttctgccagttctgccaccggatctgcgtccactggttccactggatggtggtcgtttt
gcaacctccgacctgaacgatttgtatcgtcgcgtcattaaccgtaacaaccgtttgaaa
cgtctgctggatctggctgcgccagacatcatcgtacgtaacgaaaaacgtatgttgcag
gaagcggttgatgcgctgctggataacggccgtcgcgggcgcgcgattacgggttctaac
aagcgtcctctgaaatccctggctgacatgatcaagggtaaacagggtcgtttccgtcag
aacctgctgggtaaacgtgttgactactcaggccgttctgtcattaccgtaggtccatac
ctgcgcctgcatcagtgtggtcttcctaagaagatggcactggagctgttcaagccattc
atttacggcaagctggaactgcgtggtctggcgactaccatcaaagcagccaagaaaatg
gtggagcgtgaagaagccgttgtctgggatatcctggatgaagtgatccgtgagcaccca
gttctgctgaaccgtgcaccaacccttcaccgtttgggtattcaggcattcgaacctgtt
ctgatcgaaggtaaagcgattcagttgcacccattggtgtgtgcggcttataacgccgac
ttcgatggtgaccagatggctgttcacgtaccgctgactctggaagcccagctggaagca
cgtgcgctgatgatgtctaccaacaacatcctgtctccggcgagtggtgaaccgatcatc
gttccatctcaggacgttgtattgggtctgtactatatgacccgtgactgtgttaacgcg
aaaggcgaaggcatggttctgagcgggcctaaagaagcagagcgtgtttaccgtgcaggt
ctggcttctctgcacgctcgcgttaaagttcgtatcactgaagaagtgagagatggcgaa
ggtaatgtcactgttaataccggtctggttgataccacggtaggtcgtgccatcctgtgg
atgatcgtaccgagaggtctgccatactcactgattaaccaggcgttgggtaaaaaagcc
atctccagaatgctgaatacctgttatcgcgtactgggcctgaaaccaacggttatttta
gctgaccagaccatgtataccggttttgcttacgctgcccgttcaggggtatccgtaggt
atagacgacatggttattcctgagaagaaagaaggcatcatcgcggaagcagaagcagaa
gtggccgaaattcaggagcagttccagtcaggtctggtaactgcgggtgaacgttataac
aaggttatcgatatctgggctgcggcgaacgaacgtgttgctaaggcgatgatggaaaac
ctgtctactgaaactgtgattaaccgtaacggtgaagaagaacagcaggtttcttttaac
aacatctttatgatggccgactccggtgctcgtggttccgctgctcagattcgtcagttg
gcgggtatgcgtggtctgatggcaacaccagatggttcgatcatcgaaaccccaatcacc
gcgaacttccgtgaaggtctgaacgtactccagtacttcatttcaacccacggtgctcgt
aaaggtcttgcggataccgcattgaaaacggcgaactccggttacctgactcgtcgtctg
gttgacgttgcccaagacttggttgtgactgaagatgactgtggtactcacgacggtatt
ctgatgactccggttatcgaaggtggtgatgttaaagaaccactgcgtgagcgcgtattg
ggtcgtgtaacggctgaagacgttctgaaaccaggcacagcagatattctggtagagcgt
aatactctgctgaacgaaaaatggtgtgatctgttagaagaaaactctgttgatagcgtg
aaagtacgttctgtagttagttgtgaaacggacttcggcgtctgtgcgaactgctacggc
cgcgaccttgctcgtggtcatcgcatcaacaaaggtgaagcagttggtgtgatcgcggca
cagtcaatcggtgagccgggtacacagctgacgatgcgtacgttccacattggtggtgcg
gcatcgcgtgcggcagcagaatccagcattcaggtacgtaacaaaggtcagttgaaactg
tccaacgcgaaattcgttacaaactcagcgggcaaactggttattacttcccgtaatacc
gaattgcgcctgatcgacgatttcggtcgtactaaagaaagctataaagtgccttacggc
tcggtattggcaaaaggtgatggtgagaaagtgaccggcggtgaaaccgttgcgaactgg
gatccacataccatgccagttgtgagtgaagtatccggtatcatccagttctatgacatg
gtagatggccagaccattacccgtcagacggacgaattgaccggcctgtcttcactggtc
gttctggacagtgcagagcgtaccggtagcggtaaagacctgcgtccggcactgaaaatc
gtcgatgctcagggtaacgatgttctgatcccgggtacagatatgcctgctcagtacttc
ctgccgggtaaagcgattgtgcagctggaagatggcatctctatctctgccggtgatacg
ttggcgcgtattcctcaggaatctggcggtactaaagatattaccggtggtctgccgcgc
gttgcggacctgttcgaagctcgtcgtccgaaagagcctgcaatcctggcagaaatcagc
ggtatcgtttccttcggtaaagaaaccaaaggtaaacgtcgtttggtcatcagcccactg
gatggcagcgatgcttacgaagagatgatccctaaatggcgtcagctcaacgtgttcgaa
ggtgaggttgttgaacgtggtgacgtgatctccgatggtccagaatctccgcatgatatt
ctgcgtctgcgtggtgttcatgcggttgcccgttacatcaccaacgaagtgcaggaagtt
taccgtctgcaaggcgttaagattaacgataaacacattgaagttatcgttcgtcagatg
ttgcgtaaagcaactatcgcaagtgcgggcagctctgaattcctcgaaggcgagcaggtt
gaatacgcgcgcgttaaagtcgcaaaccgtaagctggagcaggacggtaaagtaccagcg
actttccatcgtgatctgctgggtattaccaaagcatcactggcaacagaatccttcatc
tctgcggcgtcgttccaggaaacaacccgcgtactgactgaagccgctgttgcaggtaaa
cgtgatgaactgcgtggcctgaaagagaacgtcattgttggtcgtctgatccctgcgggt
acaggttatgcttaccatcaggcccgtatccgccgccgtcacgaaaacgaagtggttgaa
gcaccacaagttagcgttgatgaagcaactgcaaaccttgctgaattgttgaatgcaggt
ttcggtaacagcagcgataacgactaa
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integrated database retrieval system
