Xenorhabdus nematophila AN6/1: XNC2_3890
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Entry
XNC2_3890 CDS
T03752
Symbol
recB
Name
(GenBank) exonuclease V, beta chain with recC and recD: 5' and 3' nuclease, ATPase, recombinase, helicase
KO
K03582
exodeoxyribonuclease V beta subunit [EC:
3.1.11.5
]
Organism
xnm
Xenorhabdus nematophila AN6/1
Pathway
xnm03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
xnm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
XNC2_3890 (recB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
xnm03400
]
XNC2_3890 (recB)
Enzymes [BR:
xnm01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
XNC2_3890 (recB)
DNA repair and recombination proteins [BR:
xnm03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
XNC2_3890 (recB)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
PDDEXK_1
UvrD_C_2
AAA_11
Motif
Other DBs
NCBI-ProteinID:
CEK24877
LinkDB
All DBs
Position
I:complement(3900354..3904070)
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AA seq
1238 aa
AA seq
DB search
MSKERPGNARLSHQAQSHKLNPLTLPLYGQRLIEASAGTGKTYTIGLLYLRLLLGLGGSA
AFSRPLNVEEILVVTFTTAATDELRGRIRENIHQLRLACIRAETAASDPVYQQLLAEIPD
RESAAHWLLIAERQMDEAAIYTIHGFCQRMLINNAFESGVLFDQTLIQDESQLRKQGCAD
FWRRHCYPLPLPIAGEISRVWSGPEALLKDISDYLHGDMPHIVNAPDSDETLFSRHQKII
EKIDAVKCQWNESVSDLHDLIANSDVDKRSYTKKNLPNWLSKVSEWAKSPTESYQLPKEL
DKFCQSRLVEKTKKGNAPQHSLFEAIDDLYQLPLTLKDIIVARAIIEVRQSVHQEKLMRG
HMGFDDLLTRLDSALQHEGGEQLAEAIRLRYPVAMIDEFQDTDPQQYRIFQAIYRCQPED
ALPESQLPENRPAENQSLKNGLLFIGDPKQAIYAFRGADIFTYIRARSNVSAHYTLETNW
RSSAPMVYAVNKLFSCTERPFLFEQIPFIHVKAAEKNQGLKFSLHDEEQVALRFWLQPGE
GVSKGEYEQSMARLCAAQIRDWLQAGQDGKALLHQAEKSRPVVAADITVLVRDRREASLI
RNELNTLKIPSVFLSNRESVFDTPEAKDLLWLLQAVLAPEKARELRSALASSLFGLSAQQ
IDQLNRDETAWDHLVDEFDGYARIWRSRGVLPMMRAVMVKYQIAENLLAGEEGERRLTDI
LHIGELLQEASQQLDSEHAVARWLAQQISRPNAQSEAQLMRLESDRHLVQICTIHKSKGL
EYPLVCLPFICGYRKQKQAVYHDRHNFETHLSISHDDEELKAALELADEERLAEDLRLLY
VALTRSVYHCSIGVAPLIKGRKSKEGETDLHLSALGYVLQKGQKGDAALLVSSLNELSDE
NIEIEWVGEIADAQWCSQNENHLSLEARRFQRSIRDDWRVTSYSGLQYSASRAISQAALD
HRAGALSESVDVIVQSIAPKLDIDARGEKQAAQSLLMTPHTFPRGASAGTFLHSILEDID
FGHPPNQAWLSEKLITSGFDENWAPILEQWVDDILRAELNDQGMQLADIPRHQQQSEMQF
YLPVDKLLHSTEMDALTRRYDPLSAQCAPLAFHQVKGMLKGFIDLVFCWQDKFYVVDYKS
NWLGESSQSYTQEAMANAMIEHRYDLQYQLYSLALHRYLRHRLADYDYRNHFGGVIYLFL
RGIDKDNPGQGIYHYLPPFEFIDELDTLFSAADKEQSV
NT seq
3717 nt
NT seq
+upstream
nt +downstream
nt
gtgagcaaagaaagaccgggtaatgcaagactgagccatcaggctcagtctcataaactt
aaccctttaacactgccgctgtatggtcagcggctgattgaggcttcagccggtacagga
aagacttacacgataggtttgctttatctccgcctgttactgggattgggcggctctgcc
gccttttcccggccgctgaatgttgaagagattctggtggtgacttttacaaccgcggca
actgatgaattgcgtgggcgtattcgtgaaaatattcatcagcttcgtttggcctgtata
cgggcagaaaccgcggccagtgatcctgtctatcagcaacttctggctgaaattccggac
agagaaagtgcggctcattggttattgattgctgaacgacagatggatgaagctgcgatt
tatactattcacggtttttgccagcggatgctgatcaataatgcgttcgaatccggcgta
ctgttcgatcaaacattgattcaggatgaaagtcagttacgcaaacaaggttgtgctgat
ttctggcgacgacattgctatcctctgccgttgccgatagccggagaaataagcagggtt
tggagcgggccggaagcattgctgaaagatatttctgattatttgcatggagatatgccg
catattgtcaatgcgcctgatagcgatgaaacactgtttagccgtcatcagaaaatcatt
gagaaaattgatgcggtaaaatgccagtggaatgaaagtgtatcagatttgcatgatttg
attgccaattctgatgtcgataaacgtagttatacgaaaaagaacctgcccaattggtta
agtaaagtttctgaatgggctaaatcaccaacggaaagctatcaacttcctaaagagtta
gataaattttgccagtcacgtttagtggaaaaaactaaaaaaggcaacgcgccgcaacat
tcgctgtttgaggctatcgatgacttatatcagcttccgctgactctgaaagacatcatt
gttgccagggccattattgaagtccgccagtctgttcaccaagaaaaactgatgcgtggt
cacatggggtttgatgatttattgacccgtttggacagtgccttgcagcatgaaggggga
gagcagcttgcggaggcgatccggctgcgttatcccgtcgcgatgatcgatgaatttcag
gatactgaccctcagcagtatcgtatttttcaggctatatatcgctgccagccagaagat
gctttgccagaaagccaattaccggaaaaccggccagcagaaaatcaatcattaaaaaat
ggcttgttgttcattggcgatcctaaacaagcgatttatgcgtttcggggcgcggatatt
tttacttatattcgcgcgcgttctaacgtcagcgcccattatactctggagactaactgg
cgctcttctgcgccgatggtgtatgcggtcaataaactgttttcctgtacagaacgccca
ttcttatttgaacaaattccattcattcatgtaaaagccgcagaaaaaaatcaggggctg
aaattctctttacatgatgaagagcaggttgcattgcgattttggttacagcccggtgaa
ggggtttcaaaaggggaatatgaacaaagcatggcccggctgtgcgcggcccaaatccgg
gattggttgcaggcagggcaggatggtaaggcattactgcatcaggccgaaaaaagccgc
ccggtagtggcagcggatattaccgtgctggttcgtgatcgccgggaagcgtcgttaatc
cgtaatgaattgaatacacttaagataccgtcggtatttctctccaatcgggaaagcgtg
tttgatacgccagaagccaaagatctgctttggttattgcaggctgtattggcaccggaa
aaagcacgagagctgagaagtgcgctggccagtagtctatttggtctgagtgcgcagcaa
atcgatcaactcaatcgtgatgaaacggcgtgggatcatctggttgatgaatttgatggc
tatgcccgaatctggcgttcccgtggggtattgccgatgatgcgtgctgtcatggtgaaa
tatcagatagcggaaaatttgctggccggggaggagggagaacgccggctgaccgatatc
ctgcatattggtgaattgttgcaggaagcatcgcagcaattggatagtgaacacgccgtg
gcccgttggctggcacaacagatttctcgtcccaatgcccagtcagaagcccagttaatg
cggctggagagtgatcggcatctggtgcagatatgcaccattcataaatcaaaagggctg
gaataccccttggtttgcttgccttttatttgtggttacagaaagcaaaagcaagcggtc
taccatgatcgtcataattttgagacacatctcagtatttcccatgatgatgaagagtta
aaggcagctctggagctggctgatgaagaacgtttggcagaagatttacgcttgctctat
gtggcattaacgcggtcggtttatcactgtagtattggtgtggcaccgctaatcaagggc
aggaagagtaaggaaggggagactgatttacatttatctgcgcttggctatgtgttgcag
aaggggcagaaaggcgatgcggcgctgttggtcagcagcttaaatgaactttctgatgaa
aatatagaaattgagtgggtgggagagattgctgatgcacaatggtgttcgcagaatgaa
aatcatttgtcgctggaggccagaagatttcagcgttctattcgggatgattggcgggta
acgagctattctggtttgcaatattccgcttcccgtgccatttctcaggctgctttggat
catcgtgccggcgcattgagcgaatccgtggatgtcattgtgcaatctattgctccgaag
ctggatattgatgcccgcggcgaaaaacaagcagcgcaatctttgctgatgacaccccat
acttttcctcgtggcgcatcagcgggaacgtttctgcatagtatcctggaggatatcgat
tttggccatcctcccaatcaggcgtggttatcggaaaagctgattacatcagggtttgat
gaaaattgggcgccaatattggagcaatgggtagacgatattctgcgagcagagttgaat
gatcaaggaatgcaactggccgatattccgcgtcaccagcagcaaagtgagatgcagttt
tatttacccgtggataagttactgcattcaacggagatggatgcgttgactcgtcgttat
gaccctttgtcagcacagtgtgcgccgctggcctttcatcaggtgaaaggcatgttaaaa
gggtttattgatctggttttttgctggcaggataagttttatgtggtggactataaatca
aactggttgggggagagcagccagtcatatacacaagaagcgatggcaaatgccatgata
gaacatcgttacgatttgcagtatcagctttatagcctggctttgcatcgttatttgcgc
catcgtttagctgattatgattaccgtaaccattttggtggcgtcatctacttatttctg
cgtggtattgataaagataatcccggacagggtatttatcactatttaccgccttttgaa
tttattgatgaactggatacgcttttcagcgcggctgataaggaacaaagcgtatga
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