Xanthomonas oryzae pv. oryzae MAFF 311018: XOO1438
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Entry
XOO1438 CDS
T00360
Symbol
XOO1438
Name
(GenBank) ATP-dependent RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
xom
Xanthomonas oryzae pv. oryzae MAFF 311018
Pathway
xom03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
xom00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
XOO1438 (XOO1438)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
xom03019
]
XOO1438 (XOO1438)
03009 Ribosome biogenesis [BR:
xom03009
]
XOO1438 (XOO1438)
Enzymes [BR:
xom01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
XOO1438 (XOO1438)
Messenger RNA biogenesis [BR:
xom03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
XOO1438 (XOO1438)
Ribosome biogenesis [BR:
xom03009
]
Prokaryotic type
rRNA helicases
XOO1438 (XOO1438)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
AAA_19
P-loop_SecA
adh_short
Motif
Other DBs
NCBI-ProteinID:
BAE68193
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All DBs
Position
1562870..1564774
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AA seq
634 aa
AA seq
DB search
MTQESSAPLLFADLGLSGAVMRAVANVGYESPSPIQAATIPALLAGRDVLGQAQTGTGKT
AAFALPVLSNADLNQVKPQALVLAPTRELAIQVAEAFQKYAEAIPGFRVLPVYGGQPYAQ
QLSALKRGVHVVVGTPGRVIDHLDRGTLDLSQLKTLVLDEADEMLRMGFIDDVEAVLKKL
PEKRQVALFSATMPPAIRRIAQTYLKDPAEVIIAAKTTTSANIRQRYWWVSGLHKLDALT
RILEVEPFDGMIIFARTKAGTEELAQKLQARGLAAAAINGDMQQAAREKTIAQLKDGKLD
ILVATDVAARGLDVERISHVLNYDIPYDTESYVHRIGRTGRAGRTGDAILFVTLREKGML
RSIERATRQPIEEMQLPSVDAVNDTRVARFMTRITETLAGGQIDMYRDLLQRYEAENNVP
AIDIAAAMAKLLQGDAPFLLTPPVRGAREDAAPRERHQRADRGDRPRFEPKFERGPRADG
ERAPRPPRGDDAGGERPRRDPVAPRGEPELGMESYRIEVGHSHGVKPANIVGAIANEAGL
ESRYIGRIDIQDDYSILDLPADMPRELLTHLKKVWVSGQQLNMRKLEEGEAAASPAKPRF
PRGGKPSGRSNGPVRPMDRAGAPHRKGPPKPRGE
NT seq
1905 nt
NT seq
+upstream
nt +downstream
nt
atgacccaagaatcttccgcgccgctgctgtttgcagacctcggcctctcaggcgctgtg
atgagggccgttgccaatgtcggctacgagtcgccgtcgccgatccaggctgccaccatt
cccgcgttgctcgccggccgtgacgtcctcggccaggcccagaccggcaccggcaagacc
gccgcgttcgcgctgccggtgctgtccaacgccgatctcaaccaggtcaagccgcaggca
ttggtgctggccccgacccgcgaactggccatccaggtcgccgaggcgttccagaagtat
gccgaagccattccgggcttccgcgtgctgccggtgtacggcggccagccgtatgcccag
caactgagtgcgctcaagcgcggcgtgcatgtcgtggtcggtacccccggccgcgtgatc
gatcacctggaccgcggtacgctggatctgtcccagctcaagacgctggtgctggacgaa
gccgacgaaatgctgcgcatgggctttatcgacgacgtcgaagcggtactgaaaaagttg
ccggaaaagcgtcaggtggcattgttctcggccaccatgccgccggccatccgtcgcatc
gcgcagacctatctgaaggatccggccgaagtcatcatcgcggccaagaccaccacttcg
gccaacatccgccaacgctactggtgggtgagcgggctgcataagctggatgcgctgacc
cgcattctcgaggtcgagccgttcgacggcatgatcatcttcgcacgcaccaaggccggc
accgaagagctggcgcagaagctgcaggcgcgcggtctggccgcggccgccatcaatggc
gacatgcagcaggcggcgcgcgagaagaccattgcccagctcaaggacggcaagctggac
atcctggtcgccaccgacgtggccgcacgcggcctggacgtggagcgcatcagccacgtg
ctgaactacgacattccgtacgacaccgaaagctatgtgcatcgcatcggccgcaccggc
cgtgccggacgcacgggcgacgcgatcctgttcgtgacgctgcgcgaaaaggggatgctg
cgctcgatcgaacgcgccacccgtcagccgatcgaagagatgcagctgccgagcgtggat
gcggtcaacgacacgcgcgtggcgcgtttcatgacccgtatcaccgagaccctggccggc
ggccagatcgacatgtaccgcgatctgctgcagcgctatgaggccgaaaacaacgtgccg
gcgatcgatatcgccgccgcgatggccaagctgctgcagggcgatgcgccgttcctgctg
actccgccggtgcgtggcgcacgcgaagacgccgcgccgcgcgagcgtcatcagcgtgcc
gatcgtggcgaccgcccgcgcttcgagccgaagttcgagcgcggcccgcgggccgacggt
gagcgcgccccacgtccgccgcgtggcgacgatgccggcggcgagcgtccgcgtcgcgat
ccggtcgccccgcgtggggagccggaattgggcatggagagctatcgcatcgaagtgggc
cacagccatggcgtgaagccggccaacatcgtcggcgcgatcgccaacgaagccgggctg
gaaagccgctatatcggccggatcgacattcaggacgattattcgatcctggatctgccg
gccgacatgccgcgcgaactgctcacccacctgaagaaagtctgggtgtccggtcagcag
ctcaacatgcgcaagctggaagagggcgaggcagccgcgtcgccggccaagccgcgcttc
ccgcgtggcggcaagccgtccggtcgttcgaacggcccggtccgtccgatggaccgcgct
ggcgcaccgcaccgcaagggcccgccgaagccgcgcggcgagtaa
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