Xanthomonas oryzae pv. oryzae PXO86: AZ54_16660
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Entry
AZ54_16660 CDS
T03765
Name
(GenBank) RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
xoy
Xanthomonas oryzae pv. oryzae PXO86
Pathway
xoy03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
xoy00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AZ54_16660
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
xoy03019
]
AZ54_16660
03009 Ribosome biogenesis [BR:
xoy03009
]
AZ54_16660
Enzymes [BR:
xoy01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
AZ54_16660
Messenger RNA biogenesis [BR:
xoy03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
AZ54_16660
Ribosome biogenesis [BR:
xoy03009
]
Prokaryotic type
rRNA helicases
AZ54_16660
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
AAA_19
P-loop_SecA
adh_short
Motif
Other DBs
NCBI-ProteinID:
AJQ84028
LinkDB
All DBs
Position
complement(3461199..3463103)
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AA seq
634 aa
AA seq
DB search
MTQESSAPLLFADLGLSGAVMRAVANVGYESPSPIQAATIPALLAGRDVLGQAQTGTGKT
AAFALPVLSNADLNQVKPQALVLAPTRELAIQVAEAFQKYAEAIPGFRVLPVYGGQPYAQ
QLSALKRGVHVVVGTPGRVIDHLDRGTLDLSQLKTLVLDEADEMLRMGFIDDVEAVLKKL
PEKRQVALFSATMPPAIRRIAQTYLKDPAEVIIAAKTTTSANIRQRYWWVSGLHKLDALT
RILEVEPFDGMIIFARTKAGTEELAQKLQARGLAAAAINGDMQQAAREKTIAQLKDGKLD
ILVATDVAARGLDVERISHVLNYDIPYDTESYVHRIGRTGRAGRTGDAILFVTLREKGML
RSIERATRQPIEEMQLPSVDAVNDTRVARFMTRITETLAGGQIDMYRDLLQRYEAENNVP
AIDIAAAMAKLLQGDAPFLLTPPVRGAREDAAPRERHQRADRGDRPRFEPKFERGPRADG
ERAPRPPRGDDAGGERPRRDPVAPRGEPELGMESYRIEVGHSHGVKPANIVGAIANEAGL
ESRYIGRIDIQDDYSILDLPADMPRELLTHLKKVWVSGQQLNMRKLEEGEAAASPAKPRF
PRGGKPSGRSNGPVRPMDRAGAPHRKGPPKPRGE
NT seq
1905 nt
NT seq
+upstream
nt +downstream
nt
atgacccaagaatcttccgcgccgctgctgtttgcagacctcggcctctcaggcgctgtg
atgagggccgttgccaatgtcggctacgagtcgccgtcgccgatccaggctgccaccatt
cccgcgttgctcgccggccgtgacgtcctcggccaggcccagaccggcaccggcaagacc
gccgcgttcgcgctgccggtgctgtccaacgccgatctcaaccaggtcaagccgcaggca
ttggtgctggccccgacccgcgaactggccatccaggtcgccgaggcgttccagaagtat
gccgaagccattccgggcttccgcgtgctgccggtgtacggcggccagccgtatgcccag
caactgagtgcgctcaagcgcggcgtgcatgtcgtggtcggtacccccggccgcgtgatc
gatcacctggaccgcggtacgctggatctgtcccagctcaagacgctggtgctggacgaa
gccgacgaaatgctgcgcatgggctttatcgacgacgtcgaagcggtactgaaaaagttg
ccggaaaagcgtcaggtggcattgttctcggccaccatgccgccggccatccgtcgcatc
gcgcagacctatctgaaggatccggccgaagtcatcatcgcggccaagaccaccacttcg
gccaacatccgccaacgctactggtgggtgagcgggctgcataagctggatgcgctgacc
cgcattctcgaggtcgagccgttcgacggcatgatcatcttcgcacgcaccaaggccggc
accgaagagctggcgcagaagctgcaggcgcgcggtctggccgcggccgccatcaatggc
gacatgcagcaggcggcgcgcgagaagaccattgcccagctcaaggacggcaagctggac
atcctggtcgccaccgacgtggccgcacgcggcctggacgtggagcgcatcagccacgtg
ctgaactacgacattccgtacgacaccgaaagctatgtgcatcgcatcggccgcaccggc
cgtgccggacgcacgggcgacgcgatcctgttcgtgacgctgcgcgaaaaggggatgctg
cgctcgatcgaacgcgccacccgtcagccgatcgaagagatgcagctgccgagcgtggat
gcggtcaacgacacgcgcgtggcgcgtttcatgacccgtatcaccgagaccctggccggc
ggccagatcgacatgtaccgcgatctgctgcagcgctatgaggccgaaaacaacgtgccg
gcgatcgatatcgccgccgcgatggccaagctgctgcagggcgatgcgccgttcctgctg
actccgccggtgcgtggcgcacgcgaagacgccgcgccgcgcgagcgtcatcagcgtgcc
gatcgtggcgaccgcccgcgcttcgagccgaagttcgagcgcggcccgcgggccgacggt
gagcgcgccccacgtccgccgcgtggcgacgatgccggcggcgagcgtccgcgtcgcgat
ccggtcgccccgcgtggcgagccggaattgggcatggagagctatcgcatcgaagtgggc
cacagccatggcgtgaagccggccaacatcgtcggcgcgatcgccaacgaagccgggctg
gaaagccgctatatcggccggatcgacattcaggacgattattcgatcctggatctgccg
gccgacatgccgcgcgaactgctcacccacctgaagaaagtctgggtgtccggtcagcag
ctcaacatgcgcaagctggaagagggcgaggcagccgcgtcgccggccaagccgcgcttc
ccgcgtggcggcaagccgtccggtcgttcgaacggcccggtccgtccgatggaccgcgct
ggcgcaccgcaccgcaagggcccgccgaagccgcgcggcgagtaa
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