Xanthomonas oryzae pv. oryzicola CFBP7342: BE73_15215
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Entry
BE73_15215 CDS
T03868
Name
(GenBank) RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
xoz
Xanthomonas oryzae pv. oryzicola CFBP7342
Pathway
xoz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
xoz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BE73_15215
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
xoz03019
]
BE73_15215
03009 Ribosome biogenesis [BR:
xoz03009
]
BE73_15215
Enzymes [BR:
xoz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
BE73_15215
Messenger RNA biogenesis [BR:
xoz03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
BE73_15215
Ribosome biogenesis [BR:
xoz03009
]
Prokaryotic type
rRNA helicases
BE73_15215
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
AAA_19
CMS1
adh_short
P-loop_SecA
DUF6702
Motif
Other DBs
NCBI-ProteinID:
AJQ88249
LinkDB
All DBs
Position
complement(3189362..3191266)
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AA seq
634 aa
AA seq
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MTQESSAPLLFADLGLSGAVMKAVANVGYESPSPIQAATIPALLAGRDVLGQAQTGTGKT
AAFALPVLSNADLNQVKPQALVLAPTRELAIQVAEAFQKYAEAIPGFRVLPVYGGQPYAQ
QLSALKRGVHVVVGTPGRVIDHLDRGTLDLSQLKTLVLDEADEMLRMGFIDDVEAVLKKL
PEKRQVALFSATMPPAIRRIAQTYLKDPVEVTIAAKTTTSASIRQRYWWVSGLHKLDALT
RILEVEPFDGMIIFARTKAATEELAQKLQARGMAAAAINGDMQQAAREKTIAQLKDGKLD
ILVATDVAARGLDVERISHVLNYDIPYDTESYVHRIGRTGRAGRTGDAILFVTPREKGML
RSIERATRQPIEEMQLPSVDAVNDTRVARFMTRITETLAGGQIDMYRDLLQRYEAENNVP
AIDIAAAMAKLLQGDAPFLLTPPVRGAREDAAPRERHERADRGDRPRFEPKFERGPRADG
ERAPRPPRGDDAGGERPRRDPVAPRGEPEFGMESYRIEVGHSHGVKPANIVGAIANEAGL
ESRYIGRIDIQDDYSILDLPADMPRELLTHLKKVWVSGQQLNMRKLEEGEAAALPAKPRF
PRGGKPSGRPHGPVRPMDRAGAPHRKGPPKPRGE
NT seq
1905 nt
NT seq
+upstream
nt +downstream
nt
atgacccaagaatcttccgcgccgctgctgtttgcagacctcggcctgtcaggcgctgtg
atgaaggctgttgccaatgttggctacgagtcgccgtcgccgatccaggctgccaccatt
cccgcgctgctcgccggccgcgacgtcctcggccaggcccagaccggcaccggcaagacc
gccgcgttcgcgctgccggtgctgtccaacgccgatctcaaccaggtcaagccgcaggca
ttggtgctggccccgacccgcgaactggccatccaggtcgccgaggcgttccagaagtat
gccgaagccattcccggcttccgcgtgctgccggtgtacggcggccagccgtatgcccag
caactgagtgcgctcaagcgcggcgtgcatgtcgtggtcggtacccccggccgcgtgatc
gatcacctggaccgcggcacgctggatctgtcccagctcaagacgctggtgctggacgaa
gccgacgaaatgctgcgcatgggctttatcgacgacgtcgaagcggtactgaaaaagttg
ccggaaaagcgtcaggtggcattgttctcggccaccatgccgccggcgatccgtcgcatc
gcgcagacctatctgaaggacccggtcgaagtcaccatcgcggccaagaccaccacgtca
gccagcatccgccaacgctactggtgggtgagcgggctgcacaagctggatgcgctgacc
cgcattctcgaggtcgagccgttcgacggcatgatcatcttcgcgcgcaccaaggcggcc
accgaagaactggcgcagaagctgcaggcgcggggcatggcggcagcggccatcaacggc
gacatgcagcaggccgcacgcgagaagaccattgcccagctcaaggacggcaagctggac
atcctggtcgccaccgacgtggccgcacgcggcctggacgtggagcgcatcagccacgtg
ctgaattacgacattccgtacgacaccgaaagctatgtgcaccgcatcggccgcaccggc
cgtgccggacgcaccggcgacgcgatcctgttcgtgacgccgcgcgaaaagggcatgctg
cgctcgatcgaacgcgccacccgtcagccgatcgaagagatgcagctgccgagcgtggat
gcggtcaacgacacgcgcgtggcgcgtttcatgacccgcatcaccgagaccctggccggc
ggccagatcgacatgtaccgcgatctgctgcagcgctatgaggcagaaaacaacgtgccg
gcgatcgatatcgccgcggcgatggccaagctgctgcagggcgatgcgccgttcctgctg
actccgccggtgcgtggcgcacgcgaagacgccgcgccgcgcgagcgtcatgagcgtgcc
gatcgtggcgaccgcccgcgcttcgagccgaagttcgagcgcggcccgcgggccgacggt
gagcgcgccccacgtccgccgcgtggcgacgatgccggcggcgagcgtccgcgtcgcgat
ccggtcgccccgcgtggcgagccggaattcggcatggagagctatcgcatcgaagtgggc
cacagccatggcgtgaagccggccaacatcgtcggcgcgatcgccaacgaagccgggctg
gaaagccgctatatcggccggatcgacattcaggacgattattcgatcctggatctgccg
gccgacatgccgcgcgaactgctcacccacctgaagaaggtgtgggtgtccggtcagcag
ctcaacatgcgcaagctggaagagggcgaggcagccgcgttgccggccaagccgcgcttc
ccgcgtggcggcaagccgtccggtcgtccgcacggcccggtccgtccgatggaccgcgct
ggcgcaccgcaccgcaagggcccgccgaagccgcgcggcgagtaa
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