Xanthomonas phaseoli: XppCFBP6546_21800
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Entry
XppCFBP6546_21800 CDS
T05156
Symbol
XppCFBP6546P_21800
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
xph
Xanthomonas phaseoli
Pathway
xph03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
xph00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
XppCFBP6546_21800 (XppCFBP6546P_21800)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
xph03019
]
XppCFBP6546_21800 (XppCFBP6546P_21800)
03009 Ribosome biogenesis [BR:
xph03009
]
XppCFBP6546_21800 (XppCFBP6546P_21800)
Enzymes [BR:
xph01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
XppCFBP6546_21800 (XppCFBP6546P_21800)
Messenger RNA biogenesis [BR:
xph03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
XppCFBP6546_21800 (XppCFBP6546P_21800)
Ribosome biogenesis [BR:
xph03009
]
Prokaryotic type
rRNA helicases
XppCFBP6546_21800 (XppCFBP6546P_21800)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
AAA_19
CMS1
adh_short
P-loop_SecA
Motif
Other DBs
NCBI-ProteinID:
QTJ31603
LinkDB
All DBs
Position
complement(2812958..2814856)
Genome browser
AA seq
632 aa
AA seq
DB search
MTQESSAPLLFADLGLSDAVMKAVANVGYESPSPIQAATIPALLAGRDVLGQAQTGTGKT
AAFALPVLSNVDLNQVKPQALVLAPTRELAIQVAEAFQKYAEAIPGFRVLPVYGGQPYAQ
QLSALKRGVHVVVGTPGRVIDHLDRGTLDLSQLKTLVLDEADEMLRMGFIDDVEAVLKKL
PEQRQVALFSATMPPAIRRIAQTYLKDPAEVTIAAKTTTSANIRQRYWWVSGLHKLDALT
RILEVEPFDGMIIFARTKAATEELAQKLQARGMAAAAINGDMQQAAREKTIAQLKDGKLD
ILVATDVAARGLDVERISHVLNYDIPYDTESYVHRIGRTGRAGRNGDAILFVTPREKGML
RSIERATRQPIEEMQLPSVDAVNDTRVARFMTRITETLAGGQIDMYRDLLQRYEAENNVP
AIDIAAALAKLLQGDAPFLLTPPVRGAREESAPRQRNERADRGERPRFEPTFERGPRADS
DRAPRPPRGDNAGERPRREPAPRGEPEFGMESYRIEVGHSHGVKPANIVGAIANEAGLES
RYIGRIDIQDDYSILDLPADMPRELLAHLKKVWVSGQQLNMRKLEDGEAAGAASKPRFPR
GGKPSGRPNGPGRPMDRAGAPHRKGPPKPRGE
NT seq
1899 nt
NT seq
+upstream
nt +downstream
nt
atgacccaagaatcttccgcgccgctgctgtttgcagatctcggcctctcggacgctgtg
atgaaggccgttgccaatgttggctacgagtcgccgtcgccgatccaggctgccaccatc
cccgcgttgctggccggtcgcgatgtgctcggccaggcccagaccggcaccggcaagacc
gccgcgttcgcgctgccggtgctgtccaacgtcgatctcaaccaggtcaagccgcaggca
ttggtgctggccccgacccgcgagctggccatccaggttgccgaggcgttccagaaatat
gccgaggccattcccggcttccgtgtgctgccggtctacggcggccagccgtatgcccag
cagctgagcgcgctcaagcgcggcgtgcacgtggtcgtcggtaccccgggccgggtgatc
gatcacctcgaccgcggcaccctggatctgtcgcagctcaagacgctggtgctggacgaa
gccgacgaaatgctgcgcatgggcttcatcgacgatgtcgaagcggtgctgaagaagctg
ccggagcagcgccaggtggccttgttctcggccaccatgccgccggccatccgccgtatc
gcgcagacctacctaaaagacccggccgaagtcaccatcgcggccaagaccaccacctcg
gccaatatccgccagcgctactggtgggtgagcgggctgcacaagctggatgcgttgacc
cgcattctcgaggtcgagccgttcgacggcatgatcatcttcgcgcgcaccaaggcggcc
accgaagaactggcgcagaagctgcaggcgcgtggcatggcggctgcggccatcaacggc
gacatgcagcaggccgcacgcgagaagaccatcgcccagctcaaggacggcaagctggat
atcctggtcgccaccgacgtggccgcacgcggtctggacgtggagcgcatcagccacgtg
ctgaactacgacattccttacgacaccgaaagctacgtgcaccgcatcggtcgcaccggt
cgtgccgggcgtaacggcgacgcgatcctgttcgtgacgccgcgcgagaagggcatgctg
cgttcgatcgaacgcgccacccgccagccgatcgaggaaatgcagctgccgagcgtggac
gcggtcaacgacacccgcgtcgcgcgtttcatgacccgcatcaccgagaccctggccggt
ggccagatcgacatgtaccgcgatctgctgcagcgctacgaggccgaaaacaacgtgccg
gcgatcgatatcgccgccgcgctggccaagctgctgcagggcgatgccccgttcctgctg
accccgccggtgcgcggtgcgcgcgaggaatccgctccgcgccagcgcaacgagcgtgcc
gaccggggcgagcgcccgcgtttcgaacccacgttcgaacgtggcccgcgcgccgacagc
gaccgcgctccgcgcccgccccgcggtgacaatgccggcgagcgtccgcgccgcgagccg
gccccacgtggggagccggagttcggcatggagagctatcgcatcgaagtaggccacagc
catggcgtgaagccggccaacatcgtcggcgcgatcgccaacgaagccggtctggaaagt
cgttatatcggtcgtatcgacatccaggatgattactcgatcctggatctgccggccgac
atgccgcgcgaattgctcgcccacctgaagaaggtctgggtgtccggtcagcagctgaac
atgcgcaagctggaagacggcgaagcggccggtgcggcgtccaagccgcgcttcccgcgt
ggcggcaagccgtccgggcgcccgaacggcccgggccgtccgatggaccgcgccggcgcg
ccgcaccgcaagggtccgccgaagccgcgcggcgagtaa
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