Xanthomonas prunicola: MUG10_19490
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Entry
MUG10_19490 CDS
T08368
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
xpr
Xanthomonas prunicola
Pathway
xpr03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
xpr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
MUG10_19490 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
xpr03400
]
MUG10_19490 (ligD)
Enzymes [BR:
xpr01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
MUG10_19490 (ligD)
DNA repair and recombination proteins [BR:
xpr03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
MUG10_19490 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
USJ00122
LinkDB
All DBs
Position
4454287..4456914
Genome browser
AA seq
875 aa
AA seq
DB search
MSLSEYRRKRSFAKTREPEPGKALPQGQRAIFVVQLHHASRRHYDFRLQVGDALKSWAVP
KGPSYDPKVKRMAVEVEDHPVDYANFEGEIPKGEYGGGHVAQFDHGVWTTTGDPEAQLAK
GHLRFELFGNKLRGGWHLVRSGKPARQPQWLLFKDDDAYAGALEADDLLADVAAAPAEDV
RRAGAGKTQRKALTTVPPPAAKKPGTWAKQALALSNARSAEMEGAPFAPQLAKLGQCPPE
GAQWLHEIKWDGYRILATVTAGKVRLWSRNALEWTDKTPEIADAIQLLGLRSAQIDGELI
AGRGTKEDFNLLQATLSGERQMPLALAVFDLLHVDGVDIREAPLRERKHLLQQVLEATPN
ARLAYSSHVEGDGTEAFRVAGEQRFEGIISKRADRPYRQGRSDDWRKTKQLASQDYAVVG
YTAPKGSRSGFGSLLLATPDPVHGWLYVGRVGSGFSDALMREITQQLEGGGGRKPTAHVP
TSDTDLRGAIWFAPRFVVEVFYRGIGGQHLLRQASFKALRPDKRIADLTDSDAVDGPVSL
FSAKRLPKRVAKHADTVATQAPKRAATRAAATTRKSALASAASDALPTLSSPTKLIYPDI
RATKRDVWDYYQAVMDHLLPQIVGRPLSVIRCPSGAEKPCFFQKHHTAGLERVSSVKLTE
ETGSNAYYLVVEDASGLLELVQFNALEFHPWGSHADHPDVADRVVFDLDPGPDVPFAEVK
RAANDIRKLLAQLELESFLRVSGGKGLHVVVPLNPGCDWEVTKRFAKGFADALAQAEPQR
FIATATKRLRNKRIFVDYLRNGRGATAVASYSLRGRPGAPVALPLAWSALSKLQRADAFT
LPDVPEELRRRRKDPWADMDRIQQNLARWAEQDAD
NT seq
2628 nt
NT seq
+upstream
nt +downstream
nt
atgagcctgagcgagtaccgccgcaagcgcagcttcgccaagacccgcgagccagaaccg
ggcaaggccttgccgcaaggacagcgcgcgatcttcgtagtgcagttgcaccacgccagc
cgtcgccactacgacttccgcctgcaggtgggcgatgcgctcaagagctgggctgtgccg
aaggggccaagctacgaccccaaggtcaagcgcatggcggtggaggtcgaagatcacccg
gtcgactacgccaacttcgagggcgagattcccaagggcgagtatggcggcgggcatgtg
gcgcagttcgaccatggcgtgtggactaccacgggcgacccggaagcgcagctggccaag
gggcatttgcgcttcgagttgttcggcaacaagctcaggggcggctggcatctggtgcgc
tcgggcaagccggcgcggcagccgcagtggctgctgttcaaagacgacgatgcctacgcc
ggcgcgttggaggccgatgacctactggccgacgtcgctgccgcgcctgccgaggatgta
cgccgcgcaggcgccggcaagacccagcgcaaggcgctgacaaccgtgccgccgccggcg
gcgaaaaagcctggtacctgggcgaaacaggcgctggcgctgagcaacgcacgtagcgcc
gagatggaaggtgccccgtttgcaccgcagctggccaagctggggcagtgcccgcccgaa
ggagcgcagtggctgcatgaaatcaaatgggacggctaccgcatcctggcgacggtcacc
gctggcaaggtgcggctgtggtcgcgcaatgcgctggagtggaccgacaagacgccagag
atcgccgatgcgattcagttgctgggcctgcgcagcgcgcagatcgatggcgaattgata
gccggacgcggcaccaaagaagacttcaatctcttgcaggccaccctgtctggcgaacgc
cagatgccgctggcgctggcagtgttcgacctgctgcacgtggacggagtagatattcgc
gaagcgccgctgcgcgagcgcaagcacttgttgcagcaggtgcttgaggcgacgcccaac
gcgcgtctggcctacagctcgcatgtggaaggcgatggcaccgaggcgttccgggtggcc
ggcgagcagcgctttgagggcatcatttccaaacgcgcagatcgcccttatcgccaagga
cgcagcgacgattggcgaaagaccaagcagcttgccagccaggactatgcggtggtcggc
tacaccgcgcccaagggcagccgcagcggctttggctcgctgttgttggccacgccggac
ccggtgcatggctggttgtacgtaggccgcgttgggtccggcttctccgatgcgttgatg
cgcgagatcacccagcaactggagggcggtggtggccgcaagcccactgcgcatgttccc
actagcgataccgacttgcgcggggccatctggtttgcgccacgcttcgtggtggaggtg
ttctatcgcggcatcggtgggcagcacttgttgcgccaggcctcgttcaaggcgctgcgc
ccggataagcgcattgccgatcttaccgacagcgatgcggtagatggcccagtttcactg
ttttctgccaagcgtttgccaaagcgtgttgcgaaacatgccgacactgtggcgacacag
gcaccgaaacgcgcggcaacgcgtgcggcagcgacaacgcgcaaatcggcacttgcctca
gctgcatcggacgcgctgccgacgctgtccagcccgaccaagctgatctacccggatatc
cgcgcgaccaaacgcgacgtctgggactactaccaagcggtgatggaccacctgctgccg
cagatcgtgggccggccgctgtcggtcatccgctgcccaagtggtgcagaaaaaccgtgt
tttttccagaaacaccacactgctggccttgagcgcgtgagttctgtcaagctgaccgaa
gagaccggcagcaatgcgtattatctggttgtggaggatgcgtccggcttgctggaactg
gtgcaattcaatgcgctggaattccatccctggggctcgcatgccgaccacccggatgtc
gccgaccgcgtcgtattcgatctcgacccgggcccggatgtgccgtttgccgaggtcaaa
cgtgcggccaacgatatccgtaagttgctggcgcaactggaactggaatcgttcttgcgc
gtctccggcggcaagggtctgcacgtggtggtgcccttgaacccgggctgcgattgggaa
gtcaccaagcgctttgccaagggctttgccgatgccttggcgcaggccgagccgcagcgg
ttcatcgccactgccaccaagcgcctgcgtaacaagcgcatcttcgtcgactacctgcgt
aacggccgcggcgccaccgcagtggcctcctattcactgcgtggccgaccaggtgcgccg
gttgcgttgccgctggcgtggtcggcgttgtccaagctgcagcgcgccgatgccttcact
ttgcccgatgtgcctgaggagctgcgccgccgtcgcaaggatccgtgggcagatatggac
cgcatccagcagaacctggcccgctgggcggagcaggacgcggactga
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