Xanthomonas translucens pv. undulosa: FD63_00155
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Entry
FD63_00155 CDS
T03961
Name
(GenBank) DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
xtn
Xanthomonas translucens pv. undulosa
Pathway
xtn03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
xtn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
FD63_00155
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
xtn03400
]
FD63_00155
Enzymes [BR:
xtn01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
FD63_00155
DNA repair and recombination proteins [BR:
xtn03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
FD63_00155
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
DNA_primase_S
mRNA_cap_enzyme
Motif
Other DBs
NCBI-ProteinID:
AKK66019
UniProt:
A0AA86G336
LinkDB
All DBs
Position
32249..35032
Genome browser
AA seq
927 aa
AA seq
DB search
MTLREYARKRRFGATPEPADDSGAARSRRPIFVVQLHHASSRHYDFRLEADGVLKSWAVP
KGPSLRVGEKRLAVQVEDHPLSYAGFAGDIPEGHYGAGHVDVFDHGTWSCDGEPLAAIAA
GKLDFVLHGERLNGNWKLVRTALRGKQPQWLLIKRDDAFAADREADDLLQDSPAAAAKRA
AKATKATKATKATKATKATKASKASKASKAKPTRSQAPAATAATPAARPRRSDAAWRKRA
LALEGARDHPCPPGARAQLTLLRARAPDGAQWLHEIKWDGYRLLADLDAGQATLRSRNDQ
AWTETFPEVAHAVQALPVREVRLDGELVVLDADGRSDFSALQRVIEGSSRQPLRYLVFDL
LGVAGVDLREVPLLQRKQLLRALLGDTPGVLAYSDHVLGHGPEVFAAAAAKGYEGVVSKR
ADARHHGGRGGDWVKTKHENSDDFVIVGYTDPKGARNGFGSLLLAQRSAGGLRYVGRVGT
GFDESGLRRLLAQLQALHSEQAAVELPAHAPFPRRSVHWVRPQLVAEVAFRGWAKEGLLR
QAAFKRLRADKPLQDLGGDRAPPPQPAAGQGRHAVAARAAASAEKTVPAARGPAKQAKRS
ASNGNAAKNGAAKRKPATAKSAPRASTAAQKTASSASADAAAPAVVITHPERVVYPGAGI
SKGEVAAYYRAIAPWLLQEVAGRPLSLLRCPDGAGGECFFQKHNNRALGQHVQAIALKQK
SGTEDYLYIDDLAGLLELVQMNTLELHPWGATVDDPEHPDRLVFDLDPGEGVSWAQIKAA
AREIRTRLRETGLESFVRLSGGKGLHVVVPIVPDADWERARDFCEAFAQALAGSAPERYV
ATMSKAKRSGVIFVDWLRNGRGNTSVCSWSLRAREHATVAVPLRWEELARIASPQAFPLA
KALQRAARLRAHPWKEMATLEQRLPGS
NT seq
2784 nt
NT seq
+upstream
nt +downstream
nt
atgacgctgcgcgagtacgcccgcaagcgccgtttcggcgcgaccccggaaccggccgac
gacagcggcgcggcgcggtcgcggcggccgatcttcgtcgtgcagctgcaccacgccagt
tcgcgccattacgatttccgcctggaagccgatggcgtgctgaagagttgggcggtgccg
aagggtccgtcgttgcgggtcggcgaaaagcggctggcggtgcaggtggaagaccatccg
ctgtcctatgccggtttcgccggcgacattcccgagggccattacggcgccggccatgtc
gatgtgttcgatcacggcacttggtcgtgcgacggcgagccgctggccgcgatcgccgcc
ggcaagctggatttcgtactgcatggcgagcgcctcaacggcaactggaaactggtgcgc
accgcattgcgcggcaagcagccgcagtggctgctgatcaagcgcgacgacgcgttcgcc
gccgatcgcgaggccgatgacttgctgcaggattcgccggcggcggctgcgaagcgcgcc
gccaaggcgaccaaggcgaccaaggcgaccaaggcgaccaaggcgaccaaggcgaccaag
gccagcaaggccagcaaggccagcaaggcaaaacccacgcgcagccaagcgcccgccgca
actgccgcaacacccgccgcacggccacggcgcagcgacgcggcctggcgcaagcgcgcg
ctggcgctggagggtgcgcgcgatcacccgtgtccgccaggcgcgcgcgcgcagctgacg
ttgctgcgcgcgcgcgcgcccgacggcgcgcaatggctgcacgagatcaagtgggacggc
taccgcctgctcgccgatctggacgccggccaggcgacgctgcgctcgcgcaacgaccag
gcctggaccgagaccttccccgaagtcgcacacgcggtgcaggccttgccggtgcgtgag
gtgcggctggacggcgagctggtggtgctcgatgccgacggccgcagcgatttctccgcc
ttacaacgggtcatcgagggcagctccaggcaaccgctgcgctacttggtgttcgacctg
ctcggcgtggccggcgtggacctgcgcgaggtcccgctgctgcagcgcaagcaattgctg
cgcgcgctgctcggcgacacgccgggcgtgctggcctatagcgaccacgtgctcggccat
ggcccggaggtgttcgccgccgcggcggcgaagggctacgaaggcgtggtcagcaagcgc
gcggacgcgcgtcatcacggcggccgcggcggcgactgggtcaagaccaagcacgagaac
agcgatgatttcgtcatcgtcggctataccgatcccaagggcgcgcgcaacggcttcggt
tcgctgctgctggcgcagcgcagcgctggcgggttgcgctacgtcggccgtgtcggcacc
ggtttcgacgaatccggcctgcggcggttgcttgcgcagctgcaggcattgcacagcgag
caggcggcggtggagcttcccgcgcatgcgccgttcccgcggcgcagcgtgcactgggtg
cggccgcagctggtggccgaagtcgctttccgtggctgggccaaggaagggttgttgcgc
caggccgcgttcaagcgcctgcgcgcggacaagccgctgcaggatcttggcggcgatcgt
gcgccgccaccacagccggcggcaggccagggccgccatgccgtggcggcgcgcgctgcg
gcatcggcggagaagaccgtgccggccgcgcgcgggccggccaagcaggcgaaacgcagc
gcgtcgaacggcaatgccgcgaaaaacggcgccgccaagcgcaaaccggcgaccgccaag
tccgcgccgcgcgcaagcaccgcggcgcagaagaccgcgtcctctgccagcgccgatgcc
gcggccccggcggtcgtcatcacccaccccgagcgcgtcgtgtatccgggcgccggcatc
agcaagggcgaggtcgccgcgtactaccgcgccatcgcgccatggctgctgcaggaagtc
gccgggcggccgctgtcgctactgcgctgccccgatggcgccggcggcgaatgcttcttc
cagaagcacaacaaccgcgcgctcggccagcacgtgcaggcgatcgcgctgaagcagaag
agcggcaccgaggactacctgtacatcgacgatctggccggcctgctggaactggtgcag
atgaacaccctggagctgcatccctggggggcgaccgtggacgatcccgagcaccccgac
cggctggtgttcgatctggacccgggcgagggcgtgagctgggcgcagatcaaggccgcc
gcgcgcgagatccgcacccgcctgcgcgagaccgggctggagagtttcgtgcgcctgtcc
ggcggcaagggcctgcacgtggtggtgccgatcgtgcccgacgcggactgggagcgcgcg
cgcgatttttgcgaagccttcgcccaggcgctggctgggtccgcgcccgagcgctacgtg
gccacgatgagcaaggccaagcgcagcggggtgatcttcgtcgattggctgcgcaacggc
cgcggcaacaccagcgtgtgctcgtggtcgctgcgcgcgcgcgagcacgccaccgtggcg
gtgccgctgcgctgggaggaactggcgcggatcgcctcgccgcaggcgttcccgctggcc
aaggcgctgcagcgcgccgcgcgcctgcgcgcgcatccgtggaaggagatggcgacgcta
gagcagcggttgcctgggagctga
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