Xenopus tropicalis (tropical clawed frog): 100036633
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Entry
100036633 CDS
T01011
Symbol
col9a2
Name
(RefSeq) collagen alpha-2(IX) chain precursor
KO
K08131
collagen type IX alpha
Organism
xtr
Xenopus tropicalis (tropical clawed frog)
Pathway
xtr04510
Focal adhesion
xtr04512
ECM-receptor interaction
xtr04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
xtr00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
100036633 (col9a2)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
100036633 (col9a2)
09142 Cell motility
04820 Cytoskeleton in muscle cells
100036633 (col9a2)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
xtr00535
]
100036633 (col9a2)
Proteoglycans [BR:
xtr00535
]
Extracellular matrix (ECM) proteoglycans
Others
100036633 (col9a2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
100036633
NCBI-ProteinID:
NP_001090661
Xenbase:
XB-GENE-1006524
UniProt:
A0JP88
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Position
2:88004646..88054340
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AA seq
686 aa
AA seq
DB search
MVSSWVSLRFSVILHLVCLSLAQFTGPPGEPGPRGPPGPSGIPGSDGIDGDRGPPGIGPA
GSKGDPGPPGPDGPPGEPGIDGLIGAKGDPGPAGRPGSKGQPGLPGPSGKTGPGIAGLPG
NPGPVGLPGEIGATGPKGIRGQSGPAGPPGPPGKPGPSGNIQGLEGSADFLCPSNCPAGP
KGPQGLQGVKGHKGRPGPLGESGLQGAPGQKGDVGISGEQGIPGPPGPQGIRGFPGLEGP
KGETGPVGYKGMIGSVGAAGKPGEEGPKGPPGPPGEKGDRGARGVIGQIGGMGPKGTNGL
PGIDGKDGTPGLAGLKGSPGQNGMPGGPGHQGLAGLPGQPGTKGALGEKGEPGSRGEPGF
TGAPGKQGERGPPGEAGPRGIAGAKGDRGERGPVGPVGLQGKVGTKGEQGPPGVPGPQGL
PGVKGSKGFPGKVGTKGDVGDPGVEGLAGDKGEKGESGEPGPKGQQGVHGELGYNGPTGD
PGMPGVQGLPGSPGPRGLNGERGVPGMPGNQGVPGRDTSDQHIVEVVLKMLQENLAAVAV
SAKRAALGGAGIMGPPGPPGPPGPPGEQGPHGHVGPRGIPGIVGVMGQVGNTGPKGKRGE
KGDRGETGRGHQGLPGPPGIPGLPGIPGHSIDGKDGERGPQGAAGEPGRPGLPGPAGLPG
FCEAAACLAASAYAPASLTEPGTIKG
NT seq
2061 nt
NT seq
+upstream
nt +downstream
nt
atggtcagctcctgggtcagcctccgattctctgtgatacttcacctcgtctgcctgtct
ctggcacagtttactggtccaccaggagagccaggtcctcgtggccctccaggcccatca
ggaattccaggatcagatggcattgatggtgatcgagggcctccagggattggaccagcg
ggttctaaaggcgatcctggccctcctggaccagacggacctcctggtgaacctggtatt
gatggtctgataggagctaaaggagatccaggccctgcagggcgtccaggctcaaaagga
cagcctgggctacctggaccatcaggaaagacaggtcctggaattgctggacttccaggt
aaccctggaccagttggtcttcctggagaaataggagctacaggccccaagggcatacgt
ggacaatctggacctgcagggcccccaggaccacctggtaaaccaggaccttcaggaaac
atccagggcttggaaggcagtgcagatttcctgtgtccttcaaattgcccagcaggacct
aaaggaccacaaggactgcagggggtaaagggacataagggtcgtccaggaccattggga
gaatcaggattacaaggggccccgggtcaaaagggagatgttgggatttctggagagcaa
ggaattccaggaccaccgggccctcagggaatccgtggcttcccaggattggaaggacct
aagggtgaaactggccccgttggatataaaggaatgattggatcagttggagccgcagga
aagccaggtgaagagggtcctaaagggcctcctggacccccaggtgaaaaaggagacagg
ggagctcgtggtgtcattggacagattggaggcatgggaccaaaaggcaccaatggcctt
cctggaattgatggaaaagatggcaccccaggccttgctggactgaagggtagccctggt
caaaatggaatgcctggtggtcccggtcaccaaggattagctggtttgcctggtcaacct
ggaactaagggtgctcttggtgaaaagggtgagcccggctctcggggagagccaggattt
acaggtgcacctggaaagcagggagaaagaggaccccctggagaagctggccccagagga
attgcaggtgccaagggagatcgtggagagaggggaccagttggaccagttggacttcaa
gggaaagttggcacaaagggtgaacagggccctcctggtgtcccaggtccccagggtctt
cctggagtaaaagggagcaagggtttccccggaaaagttggaacaaaaggagatgtggga
gatccaggagttgaaggattggccggtgacaagggtgagaagggtgaatctggagaacca
ggacctaaaggacagcaaggtgtgcatggagaactgggttacaacggaccaactggagac
ccaggtatgcctggagtacaaggccttcctgggtcaccagggccaagaggacttaatgga
gagagaggtgttccagggatgccaggaaatcaaggagtgccgggccgggatactagtgac
caacacattgtagaagtggttttgaaaatgttgcaagaaaatcttgcagctgttgctgtc
agtgccaagcgtgcagcccttggtggagctggtatcatgggaccccctggaccacctggc
cccccaggaccaccaggagaacaaggacctcatggacacgttggtccacgtggtattcca
ggcattgtgggtgtaatgggtcaggttggaaacacaggacccaaaggcaagaggggagaa
aaaggtgatcggggagagacaggacgtgggcaccaaggtttacctggacctcctggaatt
ccaggtcttcctggcattcccggtcactctattgatggaaaagatggtgagagaggtcca
caaggggcagcaggagagcctggaagacctgggctccctggaccagcaggtctcccaggg
ttctgcgaggcagcggcatgtttggcagcctctgcttatgctccagcatctctgactgaa
ccaggcaccattaagggttaa
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