Xenopus tropicalis (tropical clawed frog): 100036690
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Entry
100036690 CDS
T01011
Symbol
usp47
Name
(RefSeq) ubiquitin carboxyl-terminal hydrolase 47
KO
K11857
ubiquitin carboxyl-terminal hydrolase 47 [EC:
3.4.19.12
]
Organism
xtr
Xenopus tropicalis (tropical clawed frog)
Brite
KEGG Orthology (KO) [BR:
xtr00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
xtr01002
]
100036690 (usp47)
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
xtr04121
]
100036690 (usp47)
Enzymes [BR:
xtr01000
]
3. Hydrolases
3.4 Acting on peptide bonds (peptidases)
3.4.19 Omega peptidases
3.4.19.12 ubiquitinyl hydrolase 1
100036690 (usp47)
Peptidases and inhibitors [BR:
xtr01002
]
Cysteine peptidases
Family C19: ubiquitin-specific protease family
100036690 (usp47)
Ubiquitin system [BR:
xtr04121
]
Deubiquitinating enzyme (DUB)
Ubiquitin-specific proteases (UBPs)
UBP/USP
100036690 (usp47)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
USP47_C
UCH
UCH_1
Ubiquitin_2
Dockerin_1
Motif
Other DBs
NCBI-GeneID:
100036690
NCBI-ProteinID:
NP_001090710
Xenbase:
XB-GENE-5760041
UniProt:
A1A5G2
LinkDB
All DBs
Position
4:6176570..6229112
Genome browser
AA seq
1354 aa
AA seq
DB search
MRPGEESHLVPKEIENAADEPRVLCIVQDTTSCKNINERITLNLPASTSVKQLYEDVSSK
AGYVSGTFSLMWGNGASNMVDMAALDPTPDRTLQEAGFEAGKKNFLHLTDKNGEQPQLAS
DESGTADSSGLDDSTQEKFIGPLPREESVACTSDYVSQNYSYSSLLSKSDTGYVGLVNQA
MTCYLNSLLQTLFMTPEFRNALYKWEFEESEEDPVSSIPYQLQRLFVLLQTSKKRAIETT
DVTRSFGWDSSEAWQQHDVQELCRVMFDALEQKWKQTEQADLINQLYQGKLKDYVKCLEC
GYESWRIDTFLDIPLVIRPFGSNTAFGSMEEALQAFIQPETLDGPNQYFCERCKRKCDAR
KGLKFLHFPYLLTLQLKRFDFDYTSMHRIKLNDRMTFPDELDMSPFIDVEDEKSPQTDSC
TDSGAENEGSCHSDQMSNDFSTDDAVDEGICLETNSNIEKLNKSVSEKNSLYELFSVMVH
SGSAAGGHYYACIKSFADGQWYSFNDQHVSRITQEDIKKTYGGSTGNRGYYSSAFASSTN
AYMLMYRLKNPARNAKFPEAIEFPEHIKLLVQKEQEQEEQEKRQREIERNTCKLKLFCMH
PVKQIMMESKLEVHKDKTMKEAVEIAHKLMDLEGVISLDCCRLVKYDEFHDYLERSYEDE
EDRTMGYLLGGVKSSYMFDLLLETKRSDQVFQSYKPGEVMVKVYVVDLKTETVAPPVSVR
AYLSQTIIEFKQLISKSVDLLPDTMRVVLERCYNDLRLLNVANKTLKAEGFFRSNKVFVE
SSDSLDYQLVFTDSHLWKLLDRHANTIRLYVSLPEHTPQTARSVGPKGGGDSNLSEDYCS
RVKGNVKSVDAILEESTEKLKSLSLQQHQDGGNGDSSKSTEGSDFENIDSPLNEADSGSA
DNRELENRILPADPENNFQPEERSDSDVNNDRSTSSVDSDILSSSHSSDTLCNADSAPIP
LANGLDSHSITSSRRSKANDGKKETWDTAEEDSGTDSEYDESGKSRGEAQYMYFKAEPHA
GEGCLGEGNKCLLVSVDKRITLAAFKQQLESFVGVSSSQFKVFRVYASNQEFESVRLNET
LSSFSDDNKITIRLGRALKKGEYRVKIFQLLVNEPEPCKFLLDAVFSKGMTVRQSKEELL
PLLRDQCGLDLSIDRFRLRKKTWKNPGTVFLDYHVYENESISSSWEVFLEALDETEKMKS
MSQLSLFTKRWRPSELKLDPFKEIVMESNSVDELRDKICDISAIPLENLEFAKGRGTFPC
DISVLEIHQDLDWNPKVSTLNAWPLYISDDGAVIFYRDKMEELVELTDEQRNDLAKKESS
RLQKTGHRVTYSPRKEKALKIYLDGPSNKDSSQD
NT seq
4065 nt
NT seq
+upstream
nt +downstream
nt
atgaggcccggagaagagagccacctggtgcccaaagagatcgaaaatgcagccgacgag
ccaagagtactgtgcatcgtgcaagacaccaccagctgcaagaacataaacgaacgaatc
acgttaaacctcccagcgtccacctccgtcaagcagctgtacgaagatgtgtccagcaaa
gcgggctatgtctccgggacgttcagtctgatgtgggggaatggagccagcaacatggtc
gacatggcagcgctggatccaaccccagacaggactttgcaagaggccggctttgaagca
ggaaagaagaacttccttcatttgacggataaaaacggcgagcagccacagctcgcatcg
gatgagtcggggacagcagacagcagtgggctcgatgacagcacgcaggagaaattcatt
ggacccctcccgagagaagagtctgtggcctgcacgagcgactatgtcagccagaactac
tcctactcctctcttctcagcaagtccgacaccggttacgtgggcctggtaaaccaagcg
atgacttgctacttgaacagcctgctgcaaaccctcttcatgaccccagagttccgcaat
gcgctgtacaagtgggagtttgaggagtcagaagaagacccggtctccagcatcccctac
caactgcaaagactctttgttttactgcagacaagcaaaaagcgagcgatagaaaccaca
gatgtgactcgcagctttggctgggacagcagtgaagcctggcagcagcatgacgtacag
gaactgtgcagggtcatgttcgatgctttggagcaaaagtggaagcagacggaacaggct
gacctcatcaatcagctgtaccagggaaagctaaaggactatgtgaaatgcttggagtgt
ggctatgaaagctggaggattgatacgttcctcgatatcccgctggtcatccggccgttt
ggctctaacacggcatttggtagtatggaagaagcacttcaagcatttattcagccagaa
accctagatggacccaatcagtacttctgtgagcgatgcaagaggaaatgcgatgcacgg
aagggtctgaagttcctgcatttcccatacctccttactctgcagctcaagaggtttgat
tttgattacaccagcatgcacaggatcaaactgaacgaccgtatgacttttcccgatgag
ctagacatgagcccattcatagatgtggaagatgagaaatctcctcagacggatagttgc
acggacagcggcgccgaaaatgaaggcagttgtcacagtgaccaaatgagcaacgatttt
tctactgatgacgcagttgatgaaggaatctgtctggaaacaaacagcaatattgaaaag
ctgaataaatccgtatcggaaaagaattctttgtatgaacttttttccgtgatggtccat
tcaggaagtgctgcggggggacattactacgcctgtataaaatcctttgctgacggccag
tggtacagcttcaatgatcagcacgtgagcaggataacacaggaggacattaaaaaaact
tatggtgggtctacgggaaatcgcggatactactccagtgcctttgctagctctacaaat
gcatatatgctgatgtacagattgaagaacccagctagaaatgcaaaattccccgaagca
atcgaatttcctgagcacataaagcttctcgtgcaaaaggagcaagaacaggaagagcag
gaaaagcgccagcgagagattgaacgcaatacatgcaaactgaagctcttctgcatgcac
ccggtcaagcagatcatgatggaaagtaaacttgaggttcataaagataaaaccatgaag
gaagccgttgagattgcgcacaagctcatggacctggaaggtgtgatttctctcgattgc
tgccgcctagtgaagtacgatgaattccatgattacctggagcgctcctatgaagacgaa
gaggaccggacgatgggatatctgctggggggcgtcaaatcctcttatatgttcgacctg
ctgttagaaaccaagagatcggaccaagtatttcagtcctataagcctggtgaggtcatg
gtaaaagtctacgtggtcgacctaaagacagaaactgtggctccacccgtcagcgtccgc
gcctatctcagccagacgatcatcgagttcaagcagctcatctccaagagcgtcgatttg
ctgccggacacgatgcgcgtcgtcctggagagatgttacaacgacttgcgccttttaaac
gtcgcaaataaaacccttaaagccgaaggattcttcagaagcaataaggtgtttgtggaa
agctccgactcgctagactaccagctggtttttaccgactctcatctgtggaagctcttg
gaccgccatgccaataccatcaggctttatgtctcgttacccgagcacacccctcagacg
gcgaggtccgtcggtccgaaaggcggcggggattcaaatctctctgaagactactgcagc
agggtaaaaggcaacgttaaatcggtggacgccattctggaagagagcacagagaaacta
aagagcctttctcttcagcagcaccaagatggcggcaacggggacagcagcaagagcacg
gaggggagcgattttgagaacattgattcgcccttaaatgaggcggattccgggtcagcc
gacaacagagaactggaaaaccgaatcttgccggctgaccccgagaacaactttcagccg
gaagagcgatcggactctgacgtgaataacgaccggagcactagctccgtggatagcgat
atcctcagctcaagccatagcagcgatacgttgtgcaacgccgacagcgcccccatcccc
ctcgccaacggactcgactcccacagcatcaccagcagcaggaggtccaaagccaacgac
ggcaagaaagagacctgggacactgccgaggaggattctgggacagatagcgagtacgac
gagagcggcaaaagcaggggagaggcacagtatatgtattttaaagcagagccccatgct
ggggagggatgcttaggggaaggaaataaatgcctcctggtaagcgtcgataaaaggatc
accttagctgcctttaaacagcaattggagtctttcgtgggggtgtcctcctcccagttt
aaagttttccgggtctatgccagcaatcaggagtttgagagtgtccggctcaatgagact
ctttcttctttttcagatgacaacaagatcactatcagactagggagagcgctgaagaaa
ggagaataccgtgtcaaaatctttcagcttttagtaaacgagcctgagccgtgcaagttc
ctgttggacgcagtgttttctaaaggaatgaccgtacggcagtctaaagaggagctgttg
ccgcttctcagggatcagtgtgggcttgacctttctatagataggttccgcctgcgaaag
aaaacgtggaagaacccaggaaccgtatttctggattaccacgtttatgagaatgaaagt
atttcaagcagctgggaggttttcttagaagctctggatgaaacagagaaaatgaagtcc
atgtcacagctttccctgtttacaaagaggtggaggccatcggagctaaagctggacccc
ttcaaggaaattgtcatggaaagcaacagtgtggatgagttaagagacaagatttgtgat
ataagtgctatacccttggagaacctagagtttgctaagggccgaggcacgttcccctgt
gacatttcagttttggagatccatcaggatttggactggaaccctaaagtttccacgctg
aatgcttggccgctgtacatttcagacgatggagcagtcatattttacagagacaaaatg
gaggagttggtggaactgacggacgagcagcgaaacgatctggcgaagaaggaaagcagc
cgcttgcaaaagaccggccaccgcgtaacctactccccccgaaaggaaaaagcactaaaa
atctacctagacgggccgtccaataaggattcatcgcaagactga
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