Xenopus tropicalis (tropical clawed frog): 100135270
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Entry
100135270 CDS
T01011
Symbol
upf1
Name
(RefSeq) regulator of nonsense transcripts 1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
xtr
Xenopus tropicalis (tropical clawed frog)
Pathway
xtr03013
Nucleocytoplasmic transport
xtr03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
xtr00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
100135270 (upf1)
03015 mRNA surveillance pathway
100135270 (upf1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
xtr03019
]
100135270 (upf1)
Enzymes [BR:
xtr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
100135270 (upf1)
5.6.2.5 RNA 5'-3' helicase
100135270 (upf1)
Messenger RNA biogenesis [BR:
xtr03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
100135270 (upf1)
mRNA cycle factors
Common to processing body (P body) and stress granule
100135270 (upf1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
ATPase
nSTAND3
Helicase_RecD
DEAD
AAA_16
UvrD-helicase
SRP54
UvrD_C_2
AAA_22
Motif
Other DBs
NCBI-GeneID:
100135270
NCBI-ProteinID:
XP_002938872
Xenbase:
XB-GENE-6258022
UniProt:
A0A6I8T1P3
LinkDB
All DBs
Position
1:complement(98855981..98884078)
Genome browser
AA seq
1100 aa
AA seq
DB search
MSVEAYGPSSQTLTFLDTEEAELLGADTQGSEFEFTDFTLPSQTQTQGQSQNQLDGQVNG
PDGMLQNGTVDDGVGKTSQLLGELNFEEDEEDTYYTKDLPVHACSYCGIHDPACVVYCNT
SKKWFCNGRGNTSGSHIVNHLVRAKCKEVTLHKDGPLGETVLECYNCGCRNVFLLGFIPA
KADSVVVLLCRQPCASQSSLKDINWDSSQWQPLIQDRCFLSWLVKIPSEQEQLRARQITA
QQINKLEELWKENPSATLEDLEKPGVDEEPQHVLLRYEDAYQYQNIFGPLVKLEADYDKK
LKESQTQDNITVRWDLGLNKKRIAYFTLPKTDSDMRLMQGDEICLRYKGDLAPLWKGIGH
VIKVPDNYGDEIAIELRSSVGAPVEVTHNFQVDFVWKSTSFDRMQSALKTFAVDETSVSG
YIYHKLLGHEVEDVIIKCQLPKRFTAQGLPDLNHSQVYAVKTVLQRPLSLIQGPPGTGKT
VTSATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIHQTGLKVVRLCAKSREAIDSPVSFL
ALHNQIRNMESMPELQKLQQLKDETGELSSADEKRYRALKRTAERELLMNADVICCTCVG
AGDPRLAKMQFRSILIDESTQATEPECMVPVVLGAKQLILVGDHCQLGPVVMCKKAAKAG
LSQSLFERLVVLGIRPIRLQVQYRMHPALSAFPSNIFYEGSLQNGVTAADRVKKGFDFQW
PQPDKPMFFYVTQGQEEIASSGTSYLNRTEAANVEKITTKLLKAGAKPDQIGIITPYEGQ
RSYLVQYMQFSGSLHTKLYQEVEIASVDAFQGREKDFIILSCVRANEHQGIGFLNDPRRL
NVALTRARYGVIIVGNPKALSKQPLWNHLLNYYKEQKVLVEGPLNNLRESLMQFSKPRKL
VNTINPGARFMTTAMYDAREAIIPGSVYDRSSQGRPSNMYFQTHDQIGMIGSGPSHVTAM
NIPIPFNLVMPPMPPPGYFGQANGPAPGRGMPKGKATRGGRQKQRGIGLPGMSQGNMPNS
QASQDVVSQPFSQGPLTQGYISMSQPSQMSQPGLSQPELSQDSYLGDEFKSQIDVALSQD
STYQGERAYQHGGVTGLSQY
NT seq
3303 nt
NT seq
+upstream
nt +downstream
nt
atgagcgtggaggcgtacgggcccagctcgcagaccctcactttcttggatacggaggag
gccgagctgctcggggccgacactcagggctcagagtttgagttcacagacttcacgctg
cctagccagacacagacacaagggcaaagccagaaccagctggacgggcaggtaaatgga
cctgatggcatgcttcaaaatggcacagtggatgatggtgttggcaaaactagccagttg
ttgggtgaattgaactttgaggaagatgaagaagacacatattatactaaggatcttcca
gttcatgcttgcagttattgtggcatccatgatccagcctgtgttgtgtactgcaacacc
agtaaaaagtggttttgtaacggccgaggaaacacttcaggcagccacatcgtaaaccat
ttggtccgagctaaatgtaaggaggtaacactccacaaagatggacctttgggggaaacc
gtgctggaatgttacaactgtgggtgtcgtaatgttttccttcttggttttattcctgct
aaagctgactctgtggttgtactactttgcagacaaccttgtgccagtcagagcagcctt
aaggatatcaactgggatagctcccagtggcaacccctcattcaagatcgctgcttcctt
tcttggctggtaaagataccttctgagcaggagcaactaagagcccgtcaaattacagct
cagcaaatcaacaaactggaggaactgtggaaggaaaacccttcagcaaccctagaagac
ctagaaaagcctggtgttgatgaggaaccacagcatgtcttgctcagatatgaagatgcc
tatcagtaccaaaatatctttggtccacttgtcaaacttgaagctgattatgacaagaag
cttaaagaatcccagacccaagataacataacagtgaggtgggacctaggtctcaacaag
aaaagaattgcatacttcacactgcctaagactgattcagatatgcgtctaatgcaaggt
gatgagatttgtttgagatacaaaggagatttggcacctctttggaagggcatcggtcac
gttattaaagttcctgataattatggtgatgaaattgccattgagttgagaagtagtgtt
ggtgcaccagttgaagtcactcataatttccaagttgactttgtctggaaatcaacttca
tttgacagaatgcagagcgctttgaagacctttgcagtggatgaaacctccgtttcaggt
tatatttaccataaacttttgggacacgaagttgaagatgtgattataaaatgccaactt
ccaaagcgatttacagcacaaggtcttccagatcttaaccactcgcaggtttatgcagtt
aagactgtattgcagcgcccactcagtctcattcagggcccacctggaactggtaaaact
gtaacatcagccaccattgtttatcatctggcaaggcaaggaaatggacctgtcctggta
tgtgcaccaagcaacattgctgtagaccagcttactgaaaaaatccaccaaacaggcctc
aaagtggttcgtctctgtgctaagagccgtgaagctattgactcacctgtttcgtttttg
gctttgcacaaccaaattcgcaatatggaaagtatgcctgagctccagaagttacaacag
ttgaaagatgagactggagaattgtcctcagctgatgaaaaacgctatcgtgccttgaaa
agaactgctgaaagagagttacttatgaacgctgatgtgatttgctgtacttgtgtgggt
gcaggtgaccctagacttgcaaagatgcagtttcgctctattttaattgatgaaagcact
caagccacagaaccagagtgcatggtgccagttgttttgggagccaaacagcttattctt
gtgggtgaccactgccagcttggcccagttgtaatgtgcaagaaggcagcgaaagcagga
ctgtctcagtctctttttgagagacttgtagtactgggtatccgaccaattcgtttgcag
gttcagtaccggatgcatcccgctttaagtgcttttccatcaaatatattttatgaagga
tctcttcagaatggtgttactgcagcggaccgtgttaagaaaggatttgacttccagtgg
cctcagccagataaaccaatgttcttttatgtgacccaaggacaggaagaaattgccagt
tctggtacttcttacttaaacagaactgaagctgctaatgtggagaagatcacaacaaag
cttcttaaggcaggagctaaaccagatcaaattggaataatcacaccatatgaaggccag
cggtcttacctggtgcaatatatgcagttcagtgggtccttgcatacaaaactttaccag
gaggtcgaaattgcaagcgtggatgcttttcaagggcgtgaaaaagactttattattcta
tcttgtgtacgagccaatgagcatcaaggaattggattcttgaatgatcctcgtcgtctt
aatgtggctttaactagagcaaggtatggggtaataatagttggaaatcccaaagctctt
tccaagcaacctttgtggaatcatctcctgaattattacaaggaacagaaagttcttgta
gagggtcctttaaataatttaagggagagtctaatgcagttcagcaagcctcgcaaactt
gtcaacacaattaatcctggtgcccgtttcatgacaactgcaatgtatgatgctcgtgaa
gccatcatccctgggtctgtgtatgaccgaagcagtcaaggacgtccctcaaacatgtac
tttcaaacccatgatcagattggcatgattggctctggacctagtcatgttactgctatg
aacattccaataccattcaatctagttatgcctccaatgccaccacctggctattttgga
caggcaaatggaccagctccaggacgtggtatgcctaaaggaaaggcaacacgcggtggg
cgtcagaaacagcgaggcattgggcttccaggcatgagccaaggaaatatgccaaacagt
caggccagtcaagatgttgtatcccaaccattctctcaaggccctctaacccagggttat
atttccatgagccagccatcccagatgagccaaccaggactttcccagcctgagttatca
caggatagctatcttggtgatgaatttaagtctcagatcgatgttgcattatcgcaagac
tctacataccagggagaacgtgcgtatcaacatggtggtgtgactgggctatcccagtac
tag
DBGET
integrated database retrieval system
