Xenopus tropicalis (tropical clawed frog): 100144640
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Entry
100144640 CDS
T01011
Symbol
sox6
Name
(RefSeq) transcription factor Sox-6
KO
K09269
transcription factor SOX5/6/13 (SOX group D)
Organism
xtr
Xenopus tropicalis (tropical clawed frog)
Brite
KEGG Orthology (KO) [BR:
xtr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
xtr03000
]
100144640 (sox6)
Transcription factors [BR:
xtr03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
HMG SOX
100144640 (sox6)
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Gene cluster
GFIT
Motif
Pfam:
HMG_box
HMG_box_2
Activator_LAG-3
Motif
Other DBs
NCBI-GeneID:
100144640
NCBI-ProteinID:
NP_001116887
Xenbase:
XB-GENE-483934
UniProt:
B1H349
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Position
4:2586555..2914323
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AA seq
777 aa
AA seq
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MSSKQAASPFTCKAEGEEEMTGDLASREMNECKDQIMASHLPLHPLNHNKPHSEELQSLV
TTLPADLDWDSMISSQHRMDSESNKLRSLYSFRTSSTSPHKPDEGARERSDLMSSVNFGT
PERRKGSLADVVDSLKQKKLEEMTRSEQEDSTCVEKILSKDWKDKMDRLNTSELLGEIKG
TPESLAEKERQLSTMITQLISLREQLLAAHDEQKKLAASQIEKQRQQMDLARQQQEQIAR
QQQQLLQQQHKINILQQQIQVQGHMPPLMIPIFPHDQRTLAAAAAAQQGFLFPPGLSYKP
GDNYPMQFIPSTMAAAAASGLSPLQLQQLYAAQLASMQVSPGAKIPTTPQPANAPGTLSP
TGMKSEKRGTSPVAQIKDEAAQPLNLSARPKTADPIKSPTSPTQSFFPMSKTSPVSLSNK
SGIPSPIRGPSLDILSSLNSPALFGDQDTVMKAIQEARKMREQIQREQLLTPHSIDGKLP
INNMGLNNCRSDKMLLDAVTGKICIRSAHTERTHFENLGPQLTGKPNEDGKLGPGVIDLT
RPEDVEGGATVVEARVYRDTRGRSSSEPHIKRPMNAFMVWAKDERRKILQAFPDMHNSNI
SKILGSRWKAMSNQEKQPYYEEQARLSKIHLEKYPNYKYKPRPKRTCIVDGKKLRIGEYK
QLMRSRRQEMRQFFTVGQQPQIPISTPTGVVYPGTISMATTTPSPQMTSDCSSTSASPEP
SIPVIQSTYGMKLDSGSLGGNDLMNGEDEMEMYDDFEDDPKSDYSSDNEANEAVSAN
NT seq
2334 nt
NT seq
+upstream
nt +downstream
nt
atgtcttccaagcaagccgcctctccattcacttgtaaagcggaaggagaggaagagatg
actggggatttagcgtcaagagaaatgaacgaatgcaaagatcagatcatggcctcccac
ctacccctgcaccccctcaatcacaacaaacctcactctgaggagctacagtcacttgtc
actaccctcccggccgacctcgactgggacagcatgatctcttcccaacatagaatggac
tcagagagcaataaactccgttccctgtactccttccgaacctcgtctacctcaccccac
aagcctgacgaaggggctcgcgagcgcagtgaccttatgagcagtgttaatttcgggacc
cccgagcggcggaagggcagtttggccgacgtggtggattcgctgaaacagaagaaactg
gaggaaatgacccggtccgagcaggaagattctacttgcgtggagaaaattctttcgaag
gactggaaagacaaaatggatcgattgaacaccagtgagcttctcggggagattaaaggc
acaccggagagcttagcggagaaagagcggcagctttccaccatgatcacccaactcatc
agcctccgagagcaactcctggcggcgcacgatgagcagaagaaactggcagcttcacag
atagagaaacagaggcaacaaatggacttggcgcggcagcagcaggaacagatcgcacgg
caacagcaacaactcctgcagcagcagcacaagatcaacatcctgcagcaacaaattcag
gttcaggggcacatgccccccctaatgatcccgatattcccacacgaccagcgcacgttg
gcggcagcagcggctgcgcagcagggattcctcttccccccgggactttcctacaaacca
ggtgataactaccccatgcagttcattccatctacaatggccgccgccgccgcctcgggg
ctgagtcctttgcaactgcagcaactctacgcggcgcagctggcgagcatgcaagtgtcc
cccggtgccaaaatacccacaacaccacagccggcaaatgccccgggaaccctgtcaccc
acaggcatgaaaagcgagaagagagggaccagccccgtagcacagattaaggatgaagcc
gcgcagcctctgaatttatccgcccgaccgaaaacagccgatcccatcaaatctcccaca
tccccgacccaaagcttcttcccaatgagcaaaaccagccccgtgagtctgtctaacaag
agcggcatccccagtcccatacggggcccttccctagatatcctttctagtcttaattca
cctgccctgtttggggaccaggacacagtcatgaaggccatccaggaggctcggaaaatg
agagaacagattcagagggagcagctgcttacgccgcacagcatcgacgggaaactgccc
atcaataatatggggctgaacaactgccggagcgataagatgctgctagatgccgtcact
gggaagatttgcattaggagcgcacacacagagagaacgcactttgaaaatctgggccct
cagttaaccgggaaacccaacgaggatgggaaattggggcccggagtcatcgatcttaca
agacccgaagatgttgagggtggcgccacggtggtggaggctcgagtgtacagggacacg
cggggtaggagtagcagtgaacctcatatcaagcgaccaatgaatgctttcatggtttgg
gcaaaggacgagaggaggaagattctccaagctttccccgacatgcacaactccaacatt
agcaaaatattaggttctcgttggaaagccatgtcaaaccaggagaagcaaccatactat
gaagaacaagctcgactaagcaagatccacctcgagaaataccctaactacaaatacaaa
cctcggccgaaacgtacctgtattgtcgatggcaaaaagctccgcattggagaatacaag
cagttgatgaggtctcgaaggcaggagatgaggcagttctttactgttgggcaacagcct
cagataccaatcagcacaccgaccggggtcgtatatcccggcaccatttccatggcaaca
acgacaccatcacctcagatgacctcagactgctccagcacgtcggccagccccgagccc
agcatccccgtcatacagagcacatacggcatgaagctggacagtgggagcctcggcggc
aacgacctgatgaacggagaagacgaaatggaaatgtacgatgactttgaggacgatccc
aaatcggactatagtagcgacaacgaagccaacgaggctgttagtgccaactga
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