Xenopus tropicalis (tropical clawed frog): 100380035
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Entry
100380035 CDS
T01011
Symbol
alms1
Name
(RefSeq) uncharacterized protein alms1 isoform X2
KO
K16741
alstrom syndrome protein 1
Organism
xtr
Xenopus tropicalis (tropical clawed frog)
Brite
KEGG Orthology (KO) [BR:
xtr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
xtr03036
]
100380035 (alms1)
09183 Protein families: signaling and cellular processes
03037 Cilium and associated proteins [BR:
xtr03037
]
100380035 (alms1)
Chromosome and associated proteins [BR:
xtr03036
]
Eukaryotic type
Centrosome formation proteins
Other centriole associated proteins
100380035 (alms1)
Cilium and associated proteins [BR:
xtr03037
]
Primary cilia and associated proteins
Other primary cilia associated proteins
100380035 (alms1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ALMS_motif
Motif
Other DBs
NCBI-GeneID:
100380035
NCBI-ProteinID:
XP_002936316
Xenbase:
XB-GENE-971971
UniProt:
A0A803JNI9
LinkDB
All DBs
Position
1:complement(16758916..16786323)
Genome browser
AA seq
2745 aa
AA seq
DB search
MAGEAEKPLGTEEPTGMESWYQLPAEEDASSIMPPLSETGALAEQTEFPTLEEGTLHSEP
DETKGHALGLVHSIQFETQDSRLSPCLPLLISTSTQGHKLFDETLYQQTELDFAPLSGSL
DISEFPGHTTKSLLISDAVTLTAKEVSLDVAGENVTLTQNPLPLSPEEDHETTNLHYLSQ
HPLPSTQKDFDFAHLAPTISDTDKTISETLQAAPHDEQYASPIENLDMVFSQEDGSFLDS
SVPAPVLLELLEKEVGISGSSEVSSTSSSSENVSNKKDLHSEEQTYNRSQMQGLDGPGKT
SDQYLLEGETFRDSSEIDFNAESFESAESLHASRPNRSHHSGITVRLAKGPPSVPGNNDL
HKELCAEIQQRYRDRMLRRSAEGLNEKDTSSLTEAFTDPNSGKDDTVVEVHSSMARDELT
ISSRCSIERGHKDSEISPAVNPTAEDNSFIGRLAYPISQSTPGTFTGKSGKNQLTGRLMQ
IKAKLTGSNMSLNEEPLSNASTEPVFKKPQSLQSSRGYAESSDSQTSQSPDRRRIQSLPS
LNYIEKVGAWNTNQSFDALVLRGLTGISPKKKAYNAVADSLNRMLSKQSDSALPKSGLSA
MSRGTGSMNNLNATKTDPSGTPQLIRSQSCTTVPMGSTERADANTQGEVVIPVSESHDVQ
RVDKVLPMDYNFSDHLPRKEQPVDYKEAIDMSGSSQEIASQTQQPKADVGSSTVAMDRFS
DVSPDNELLSSSCSSGHTNQMHSLTSLEVDNYVPLWAASPEEVKEINIEERIPTYLRNLG
IDQSPTTILTPFAPKGPIREPEFSPSELRTIKGSTATPNRSMRFSEGGSQSAADVSQSSL
YSTASTTSVSIPMGSDAGRDSPLQTEMLSQFSSSSTRDRPISQCDMATRFGEDNETLLPG
LKSEKVETGILGHEFQSVEISAVPPLSMELQCNMESTEASNRVKQLIDHFECKTISPDQH
VSSTSDVEATDFFGLASVSGIPLQKPAMEDSFSSGSVSGIPLQKPAMADSFSLASVSGIP
LQKQALADSFSLASVSGIPLQKPALADSFSLASVSGIPLQKPALADSFSSASVSGIPLQK
PFLADSFSSVSVSGIPLQKPAMADSFSSVSVSGIPLQKPAMADSFSSVSVSGIPLQKPAM
ADSFSSVSVSGIPLQKPAMADSFSSMSVSGIPLQKPALDSVNDSFVGSKTLKEIRKLLAE
AETVGFDESAHGYSFSSRVKDISSSSLPMWLKTSDSVAPTAGNSRFTSLGDGQLPEISWD
ASLSSSLTYDNLQMKDSPVKVGWDDSLASTDKFKDSTDLEKELEGQNQPIPQFKQEKLFE
RAEPEGFSEVMAVNKVTFYAPFRDGRRSDIVNTISEATECTSGHLHSITSAVRGLEQAQV
VTGLSYGRLSEKATESDDSSADSLAGRVKSLLKKDAPLMHTAQTGTSTDGKEAKTRASMQ
LKLANCSSITETILNDEDRRRIEEIKRELIEGAKESQLGQNPCCANADRMSDHWRKSEPF
RLHMTPSPDLGQSSPRMHPKLLERAPEQLAPLTTAETFNKENAHTYVKEESRLLEEAFVP
QTLKLTDLDFREASGTKRELSQQGAPAHPPLSGESSKPVTSITFSSRKRSSPLSLSSSSE
RTCPAETSPAVRPRSHDGSDPNKLILSAPAKSLSVSDTPVVAPQDTPASHLATEYRHWQH
SPTPDSSECSLHAHNSFALCNLTCTDNEGSITSLAPQISPYSHPDFHEDVPLTVGLDQSF
HSEHSSYRTEGIDGRAHSSPEPCMPASHPAAASPARKAISCVHVQISPKQEDSKKLDFDP
KLLSGSACVNNVAKLQAEEPDLSPSRAANLPGKEGALIKQDLADEKLTLSSLHLHTKPSD
SGIRPPVSSLSTPESAASVVLGRIPLHDATTQITTESPAKTTFSAEIFIDSREKDIISRS
PDVTANTTPERQPLYHARLSPATDQPLLVPYRPHGSPELFYVPYTDGLSRISPVSTIESS
HTGSNDAVSPKFPVEVLGSGTDSLSDSAMVRHKEGIYSKGSSPKLAWEASTAPHKGNSSE
TLPTISAVRHTLEKEPEHQMGSDTKPPRTALTQGNFQYERDSRLDNQRERPSLLSSHTED
NEFFPLTPEIDFNRDQRRDGSPSLRWNSPAEGSLLRNAKTISFPFSKSSPSLKVTGSSPL
PGKVSPTSLGGRSVTNGRNGENSYTNGRYMSVTRESDGHKRLHKSQATLDQSSVSQQSLD
DLWARYTNRKKLQQSESKSNHELSLVERLDRLARLLHNSSSHSPLSAKDEPLADLEQSKN
HVKERSWEGSGHKGERWYDKKLSGTGLHVGGRYSLDEIDITSHADESSVGSDLYPLLQSA
KSDSAPSETGTATQTGSEVTTQTLESSSTLKTVSSSASTIDTIRLINAFGPERVCPSSRL
SRLYSAIDLQKRRSEESTGKPSRNPAARIDTGGLHRSLNKTPESVSSASTSDSSWQPRPA
LKSKRSNKYLNKGVQAGNLEIVNSATKKNTRDVGTVFPSPRGDPHKPLTQGHGQKEERFW
DSSVFTQRGGRSKQVAAQGLSWFVPTEDLKSDSRKENRSDMKKGPSVSWYEPLTNTKPWR
EPLREKNVEEVRDQLNKSHLDPPENKALKPFVKVTLQESLKTHRPDFIFRSGERVKRLHL
IAEERKLQTVFQSEREKLFNQPAKAGEWETAQQQLQDYRLNQKNRMIPKKEMVQHSKRIY
EQLPEVKKRREAEKRRQEYESYRLKAQLFQKKVTNHVLGRKTPWN
NT seq
8238 nt
NT seq
+upstream
nt +downstream
nt
atggcgggggaagctgagaagccgctgggaacggaggaacctaccggtatggagtcctgg
taccagctgccagcagaggaggatgccagtagcattatgccgccacttagtgagacaggg
gctcttgccgagcagacggagttccctacattagaggaaggaacgttacattcagaacca
gatgagacaaagggacatgctttgggcctcgtgcactcaatacaatttgagacccaggac
agccgcctttctccttgtctcccacttctgatttccacctccactcagggacacaagctg
tttgatgagacactgtaccagcaaactgaactggattttgcacctttgagtggttcactt
gatatctctgaatttcctggccatacaacaaagtctctgctaataagcgatgcagtaaca
ctgacagccaaggaagtttcactagacgtggctggtgagaacgtcacgctgacccagaat
cctctccctcttagccctgaggaagaccatgaaaccacaaacctgcactatctatcacag
cacccgctgccttctacccaaaaagattttgactttgctcatttggctcccactatttct
gatacagacaagacaatatctgaaaccttgcaagcagccccccacgatgagcaatatgct
tctcccatagagaatttggacatggtatttagccaagaagatggttctttcctggatagc
agtgtgccagctcctgtgttgctggagcttctagagaaggaggttggcatatctggaagc
agtgaggtatcttctacaagtagctcttctgagaatgtctcaaacaaaaaagatctacac
tcagaggagcaaacatacaatagatcacaaatgcaagggctagatggcccagggaaaaca
tcagaccaatatctcctagaaggtgaaacctttcgagattccagtgaaatagattttaat
gcagaatcctttgaaagtgctgaaagcctacatgccagtaggccgaacaggtcccaccat
tctggaataactgtacgactagctaaggggccaccttctgtaccaggtaacaatgatctt
cacaaagagctctgcgccgaaatccagcaacggtacagagacagaatgttacggagatca
gctgagggtttaaatgaaaaggatacgtcttctctgacggaagcttttacagatccaaac
agtgggaaggatgacactgtagtggaagtgcattcaagcatggcccgggatgagctgact
atttcctctcgctgtagcatagagaggggacacaaagattctgagatatcaccagctgta
aacccaacagcagaggacaactcatttattggtcgtctggcttatcccatctctcagtcc
actcctggaacctttactgggaaatctggcaaaaaccagctcactggcagactgatgcaa
attaaggccaaacttacagggtctaacatgtctttaaatgaggaaccccttagtaatgcc
tctacagaaccggtattcaaaaagccgcaatctttacagagtagccggggttatgccgag
agcagtgattctcaaacatcccagtccccagacaggaggagaatccagtcactcccaagt
cttaattacattgaaaaagttggggcttggaacaccaaccagtcctttgatgccttagtt
ctccgtggcttgacaggaatatcaccgaaaaagaaagcctataacgcagtggcggattcc
ttaaaccgtatgctgtccaagcagtcagatagcgctttgccaaagagcgggctttctgcc
atgtctaggggaacagggtctatgaacaacttgaatgccactaagactgatccttctggc
acccctcaacttataaggtcccagtcttgcactactgtgccaatgggaagcacagaaaga
gcagacgccaatacacaaggtgaagtggttatacccgtgagtgagtcacatgatgtacag
agagttgataaggtgcttcctatggattacaatttttcagatcatcttcccagaaaagag
cagcctgttgattataaggaggcgattgacatgtcaggcagcagtcaagaaatcgcctct
caaacacagcagccaaaagcagatgttggtagcagcaccgtggcaatggaccgctttagt
gatgtgtctcctgataacgaactgttaagtagttcatgttcgagtgggcacacaaaccag
atgcattcactgacaagtttagaagtagacaattatgtccctctttgggcggcgtcacca
gaggaggtgaaagagatcaacattgaagaaaggataccgacttatctccgcaaccttggc
atagaccagtcacccactaccatactaacaccctttgcaccaaaaggaccaattagggag
cctgagttttcaccttcagaattgaggacaataaaggggtcaactgccacaccgaacaga
agcatgcgtttttctgaaggaggctctcagagtgcagctgacgtctctcaatccagcctc
tattccactgcatctaccacaagtgtgtcgatacccatgggttctgatgctggccgggat
tctcctctgcaaactgaaatgttgtcccagtttagctctagctctactagggatagacca
attagccagtgtgatatggccacgcgctttggagaagacaatgagactcttttgcctggt
ctgaaatcagaaaaagtagaaacgggtatattgggccatgagtttcagtctgtggaaatc
agtgcagttccacctttatccatggaactccaatgtaacatggaaagcactgaggcatca
aatagagttaaacagctcattgatcactttgaatgtaaaactattagtccggaccagcat
gtctccagtacgtctgatgttgaagctactgatttctttggcctggcatcagtatctggg
atccctctgcagaagccagccatggaagattcattcagctcagggtcagtatctgggatc
cctttgcagaagccagccatggccgattcattcagcttggcatcagtatctgggatccct
ttgcagaagcaagccttggcagattcattcagcttggcatcagtatctgggatccctttg
cagaagccagccttggcagattcattcagcttggcatcagtatctgggatccctttgcag
aagccagccttggcagattcattcagctcggcatcagtatctgggatccctttgcagaag
ccattcttggcagattcattcagctcagtgtcagtatctgggatccctttgcagaagcca
gccatggccgattcattcagctcggtgtcagtatctgggatccctttgcagaagccagcc
atggccgattcattcagctcggtgtcagtatctgggatccctttgcagaagccagccatg
gccgattcattcagctcggtgtcagtatctgggatccctttgcagaagcccgccatggca
gattcattcagctcgatgtctgtatctgggatccctttgcagaagccggccttggattct
gtaaatgattcttttgttggttcaaagactctgaaggagatacgcaaactgctggcagaa
gctgaaactgttggttttgatgagtcagctcatggctactcattctcttctcgggttaaa
gacatttctagctcttctttaccaatgtggctgaaaaccagtgactccgtagctcctact
gctgggaatagcagatttaccagcctgggagacggtcaattgccagagatatcatgggat
gcctctctaagcagcagcctaacgtatgacaacttgcaaatgaaagattccccagtaaaa
gtgggttgggatgattctctagccagcactgacaaatttaaagatagcacagatttggaa
aaagaattagaaggccaaaaccaacccattccacagtttaaacaagagaagctgtttgag
agagctgagcctgaaggctttagtgaagtgatggctgttaataaggtgacattttacgct
ccctttcgagatggtaggagaagtgatatagtcaataccatttctgaagccactgagtgc
acctcaggccatctccatagcattacaagtgctgtacggggtttggagcaagcacaggtc
gtgactggtctatcctatggacgactgtccgagaaagcgacagaaagtgatgacagcagc
gctgactctttggctggtcgagtgaaaagtctgctgaagaaagatgcaccattaatgcac
acagcacagacagggacaagtaccgatgggaaggaggcaaaaacacgtgcttccatgcag
ctgaaactggccaattgttcttccattacggagacaattctaaatgatgaggacaggaga
cgaatagaagagattaagagagagttaatagagggggcaaaggaatcacagctgggacag
aatccatgttgtgccaatgctgacaggatgtctgaccactggaggaagtcggaacctttt
cgtttacacatgactccgtcacctgacctcggtcagtccagtcctagaatgcaccctaag
ttgctcgagagagctccggaacagttggcacctctaacaactgcagaaacattcaacaaa
gagaatgctcacacctacgtgaaagaggagtctcgcctgttggaagaggcctttgtgccc
cagacattgaagttgacagatttggatttcagagaagcttccggcacaaagagggaactg
agccaacagggggctcctgctcatccaccactgagtggagaatcctccaagccagttaca
tccattaccttttcatcacgcaaacgcagctctcctctttccctttcctccagttccgaa
aggacgtgtcctgcagaaacttctcccgctgtgcggccacgcagccatgatgggtctgat
cccaacaaactgatcctcagtgcaccagctaagtctctttctgtatcagacacacctgta
gtggctcctcaggatactccggcctcccatctggctactgaataccgacattggcaacac
agtcccactcctgattcatccgaatgcagccttcatgctcacaacagttttgcactatgt
aacctgacttgcactgataatgagggcagcattacctctctggcaccacaaatctctcct
tatagccaccctgacttccatgaagatgttcctctaaccgttggcttagatcagagcttc
cattcagaacacagttcatatcgcacagaggggattgatggaagagcccattcctcccca
gagccctgtatgccagccagccaccctgctgctgcttctccagctagaaaagccatatcg
tgtgttcatgttcaaatctcccccaaacaggaggactccaagaaactcgactttgaccca
aagctcctgagtggctctgcatgtgttaataatgtggccaagctgcaggcagaggaacct
gatctgtccccatcacgtgctgcaaacttgccagggaaggagggggcattaataaaacaa
gatcttgctgatgaaaaactgacattatcttccctccatttgcacacaaagccaagtgac
agtggcattcgcccacctgtaagttccctatctacgccagagagtgcagcatctgtggtg
ctcggccgcattcccttacatgatgcaacgacgcagataaccacggagagcccagccaaa
acaaccttctctgctgagatatttattgacagtagagaaaaggatataatatccaggtct
ccagatgtaacagccaacaccactccagagaggcagcctttataccatgcccgactctcc
ccagccactgatcaacctttgctcgtgccatacagacctcatgggagccctgagttgttc
tatgttccctacactgatgggttatccaggatctctcctgtcagcaccatagagagctcc
cacacaggctccaatgatgcagtttcacccaaatttcctgtggaagtgctgggctcaggc
acggatagtctgtctgattcggcaatggtccggcataaagaaggcatatacagcaaaggc
tctagccccaagctggcctgggaagcaagcacagcaccacataaaggaaattcctcagag
actttgccaacaatatcggctgtacgacatacgctggagaaagagccagagcatcagatg
ggttccgatactaaacctccccgtactgctcttacacaaggaaactttcaatatgaacgt
gattccagattagataatcagagggaaaggccttcccttctctccagccacactgaggat
aatgaattcttccccttaacgccagaaatagatttcaacagggaccagcgacgtgatggc
agcccaagcctgaggtggaacagtccagctgaaggttctttgctaagaaatgctaaaact
atttcttttcctttttcaaaaagttctcccagccttaaagtcactgggagtagcccactg
cctggaaaggtctctccaacttcacttggtggcaggtctgtcaccaatggaagaaacggt
gagaattcctataccaatggccgctacatgtctgtgactcgggagtctgatggccataag
cggttgcacaagtcccaggccactctggatcagagctctgtctcccaacagagtctggat
gatctatgggctcgttatacaaataggaaaaagcttcagcagtcggaatccaagagcaat
catgagctttcactggtggagaggctagatcgcctagccaggctccttcacaattcctct
tcccactcaccactctcggcaaaggacgaaccacttgctgacctagagcaaagcaagaac
catgtgaaagagagaagctgggagggcagtggccataaaggagaaagatggtatgacaag
aagctctcaggaacaggccttcatgtagggggcagatattcgctagatgagatagacatt
actagtcatgctgatgagagctctgtaggctcagacttgtacccactgctccaaagcgcc
aaatccgacagcgccccctctgaaacaggaacggctacacaaacaggcagcgaggtgact
acacagacattagaatccagctccactctaaagacggtatccagctctgcttctaccata
gacaccatacgccttattaacgccttcggtcctgaaagggtctgtccatcgtcccggctc
tcccgcttgtacagcgccattgaccttcagaagagacgctcggaagaaagcacaggcaag
cccagcaggaaccctgccgccagaatagacacggggggacttcacagaagcttaaataag
accccagaatccgtatcttctgcctccacgtctgacagctcttggcaaccaagaccagcc
ctcaaaagcaaaaggagcaacaagtacttaaacaaaggtgttcaggcaggaaatctggaa
atagtaaatagtgctactaagaaaaacacaagggatgttggcacagtttttccttcgcca
agaggagacccccataaaccacttacccaggggcacggacagaaggaagagcgcttctgg
gacagcagtgtctttactcagcgaggtgggaggagcaagcaggtcgcagcacaagggctg
agttggtttgttccaactgaggacttgaaatcggactcaagaaaggagaataggtctgac
atgaagaaaggccccagtgtaagttggtacgagcctctgaccaatacaaagccctggagg
gaacctctgcgagagaagaacgtggaggaagtccgtgaccagctaaataaatcccacttg
gatccccctgagaacaaggcactgaagccatttgtcaaagttactctgcaggaatctctg
aagactcaccgacccgatttcatattccgctccggggagagggtgaagcgcttgcacctt
atagccgaggagcgcaaactgcagactgttttccagagtgaaagagagaaactattcaac
caaccggcaaaagcaggcgagtgggagacagcgcagcagcagctgcaagactacaggtta
aaccagaagaacagaatgatccctaagaaagaaatggtccagcactccaaaaggatttat
gagcagctcccagaagtgaagaaaagacgagaggcagagaagaggagacaggagtacgaa
tcctatcgactgaaggctcagctctttcagaagaaagtcacaaaccatgtgctgggaagg
aaaaccccctggaactga
DBGET
integrated database retrieval system
