Xenopus tropicalis (tropical clawed frog): 100486255
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Entry
100486255 CDS
T01011
Symbol
usp40
Name
(RefSeq) ubiquitin carboxyl-terminal hydrolase 40
KO
K11869
ubiquitin carboxyl-terminal hydrolase 40 [EC:
3.4.19.12
]
Organism
xtr
Xenopus tropicalis (tropical clawed frog)
Brite
KEGG Orthology (KO) [BR:
xtr00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
xtr01002
]
100486255 (usp40)
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
xtr04121
]
100486255 (usp40)
Enzymes [BR:
xtr01000
]
3. Hydrolases
3.4 Acting on peptide bonds (peptidases)
3.4.19 Omega peptidases
3.4.19.12 ubiquitinyl hydrolase 1
100486255 (usp40)
Peptidases and inhibitors [BR:
xtr01002
]
Cysteine peptidases
Family C19: ubiquitin-specific protease family
100486255 (usp40)
Ubiquitin system [BR:
xtr04121
]
Deubiquitinating enzyme (DUB)
Ubiquitin-specific proteases (UBPs)
UBP/USP
100486255 (usp40)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UCH
UCH_1
TUG-UBL1
Rtt106_N
Motif
Other DBs
NCBI-GeneID:
100486255
NCBI-ProteinID:
XP_002932051
Xenbase:
XB-GENE-980927
UniProt:
F6UFJ3
LinkDB
All DBs
Position
9:60615173..60668003
Genome browser
AA seq
1226 aa
AA seq
DB search
MFGDLFEEDEDFSFLLSSPNKNGKKSHPRDSKTPEPRGDTRLSGLRNQGGTCYLNSLLQT
LFFTPEFREALFALGPKELGSLEEKDTPDSRVRIIPLQLQRLFAQLLLLDQQALSTTDLT
ESFGWNSSEETSQHDVQELNRILFSALESSLEGTSGHDLIKRLYHGTIVNCIQCKECGYI
SERQEDFLDLTVAVKGVGSLENSLCSMYLEEEHFDGDNLYRCGSCAKLVPATKSAKLGKL
PPFLTLSLLRFNFDFVKCERYKETSRYTFPTRLIIRPFCEQHNLEDSVYAYELFSVIIHK
GGCYGGHYHAYIQDVDELGHWGLKEVAKKTASAQESESKQDCPIVALASIIAEAGADQMV
AVDQLGQKLLEYMGTSWNKTYRKQHGAMHKFLQSHPSVFQMSADGSLVGLAHSVPDTVGS
DSESSRPGTPEKSQAPSRSAGHWFDFNDSKVEPIRETDIEKQFQGKESAYMLFYRKCEMN
RPPEAKGNPRFGVPEHILNDMDQENIELQTKRTESALQINCMDLCLHLSSHYQYENGALH
PAHPRNNSKLAIAIDRRRTVEDLKQLAFQVLDESLEGQVLSIARVLPAGLHIFQNLIDAK
MDLVTAGITDGTDIFVWDGKQVGGVMIQSGAEFTPVLLTILRPVLQTNSSAEFSESQRAF
PSCACLKDIQKELAGPTCEESVLCFPSSENSEQWSFYSADDSNKSLKELGLRDGSSILLF
DTRSDGDVYLASERHLSKDAKQNFLMVQDWCRQQDEKETVKIIITPNTTIQDIHVKAVEL
LQLQEECSKNDTCLRPLHRKEKLLPPVPESLTVQEAELKNGCTLGLCKGKAPSPSQIFLY
FISGTDLQEGSEQEIILEETLTVRQSLERMLNKAGLPGKAGWHLRKMDWCYEAGEALSDE
ESTLKELNICAGDTLVITEGKLPPKGFLKLSIWLYCPHTQQDAMNHVTCEPGALQTSTTE
DNNMQEGGTSNFCSVGEIEISGDLSLQDVKMQILTLPVFEALGIPSPEFLRVWTLENKHL
GKILRSPPVLLSEYKLGSKPALCIEPLQVEECLGAKDLVLRVQLSVPGERRYFPPVDIVW
DISRGCTAPALLHRIAMHCSLPTDKVEIAKHFPEKYEWLPISSWTQHVSRKRKKKKLESL
QGAPYHLKDGDIIGVKNLLLDDWTDFSSEIDRIGKEKQQQQQRPANGNKSLHAEGLQNNT
AGSNGRAKSKARKAETSLSIRVGVFR
NT seq
3681 nt
NT seq
+upstream
nt +downstream
nt
atgtttggagacctatttgaggaagatgaagacttttcattccttttgagcagtccaaac
aagaatggcaagaaatcccaccccagagattcaaagaccccagagccccgaggagacaca
aggcttagtggactgaggaatcaaggtggcacctgttacctaaattctcttctgcagacc
ctgtttttcacaccagaattcagagaagctctttttgctttgggtcctaaagaacttgga
tcactggaggagaaagacacgccagactctcgggtgcgaattattcccctgcagttacag
cgtctcttcgctcaacttctgctgctggatcagcaggccttgtcaaccacagatctcaca
gagagctttgggtggaacagtagtgaggagacaagccagcatgatgtgcaagagttaaac
cgtattttgttcagtgctcttgagagctcattggagggcacatctggccatgacctcatc
aagcgattgtaccatggcaccattgttaactgtatccagtgcaaggagtgtggctacatc
agtgaaaggcaggaggatttccttgacttgacggtggcagtgaagggcgtgggcagtctg
gagaattctctgtgtagcatgtatttggaagaggaacactttgatggagataatttgtac
agatgtgggagctgtgccaagcttgtccctgcaaccaagtctgccaagttggggaaactg
ccaccctttctcacactatctctgctgaggtttaactttgactttgtaaagtgtgagcgt
tataaggaaacttcacgatacacctttcccacccgcctcatcatccggcccttttgtgag
cagcataatctagaagactccgtatatgcctatgagctcttctctgttattatacacaag
ggcggctgttatggaggtcattatcatgcatatattcaagatgtcgatgagctggggcat
tggggactcaaggaagtggctaaaaagacagcatcagcacaggagtctgagagtaaacaa
gattgcccaatagttgctcttgcttccatcatagcagaggctggggccgatcaaatggtg
gcagttgaccagctgggacagaagctattggaatacatgggaacatcttggaataagact
tatcgcaagcagcatggagctatgcacaagttcctgcaaagccatccctccgttttccag
atgagtgcagatggctcgcttgtaggtttggcgcatagtgttccagacacagtaggctcc
gattcagagagctctaggccaggtactccagagaaatctcaagctccatctagaagtgct
ggtcattggtttgattttaacgattccaaagtggaacccatccgcgagacggatattgaa
aagcaattccagggcaaggaatctgcatatatgcttttttatcgcaagtgtgaaatgaat
agaccaccagaagctaaaggcaatcctcgctttggagtcccagagcacattctaaatgac
atggaccaagaaaatatcgagcttcagacgaaaagaactgaatcggccttacagatcaac
tgcatggacctttgtctccatctgtcttctcattaccaatatgaaaatggtgccctgcat
ccagcacatccccgaaacaacagtaagctggcaattgctatagaccgcaggaggactgta
gaagatctaaaacaattagctttccaggttcttgatgaatctttggaaggacaagtcctg
agtattgctagagttctacctgctggacttcatatctttcagaatctgattgatgccaag
atggatctggtcactgcaggaattacagatggaactgacatctttgtgtgggatggaaag
caggttgggggtgtaatgattcagagtggagcagagttcacgccagtcctgctcaccatc
ctgcgcccagtcctgcaaacaaattcttcagctgagttcagtgagagtcagagagcgttc
ccatcatgtgcctgcttgaaagacatacaaaaagagcttgctggccccacctgtgaggag
tcagtgttgtgcttcccttcgtcagagaatagtgagcagtggagtttttattctgctgac
gactcaaacaagagcctaaaagaattggggctaagagatggcagctctattctcttgttt
gatacacgttcggatggggatgtatatcttgcatcagaaagacatttatctaaagacgcg
aagcagaacttcctcatggtgcaggactggtgcagacagcaggatgagaaagaaacggtt
aaaataattatcactcccaacactactatacaagatatccatgtgaaagcagtcgaattg
ctgcagctacaggaagagtgtagcaaaaatgacacttgcttaagacccctccacagaaaa
gagaagcttcttcccccagtgccagaaagcctaactgtgcaggaggcagaactgaaaaat
ggatgtaccttagggctctgcaaagggaaagcccccagcccctcccagatcttcttgtat
ttcatttccgggactgacctgcaggagggcagcgagcaggagattattttagaagaaact
ctcactgtgagacagagcctggaaaggatgctgaataaagcaggtttgccaggtaaggca
ggatggcacctgagaaagatggactggtgttatgaagcaggagaggctctgagcgatgag
gagtccacactgaaagagctgaatatctgcgctggagacacattggtgatcactgaaggg
aaacttccacccaagggtttcctgaagctttctatatggctgtactgcccccatacacag
caagatgctatgaatcatgtgacctgtgaaccaggtgctctacagacctccactacagaa
gataataacatgcaagaaggtggaacctctaatttctgctctgttggtgagatagaaata
tcaggagacttatcattacaggatgtgaaaatgcagatcctgactttgccagtttttgaa
gccctagggatcccttctcctgagttcctcagagtctggaccctggaaaacaagcatctg
gggaaaatcctgcgctcgcctccagtgttactcagtgagtacaaactggggagcaagcca
gcactatgcattgagcctttgcaggtggaggaatgtttgggtgctaaagatcttgtcttg
cgggtgcagctgtctgtcccaggggagcgtcgctattttcctcccgtagatattgtgtgg
gatatatccagaggctgcacagccccagccttgctgcacagaattgccatgcattgctcc
ctgccaacagacaaggtggaaattgcaaagcactttccagagaaatatgagtggcttcca
atatccagttggacccaacatgtctccagaaagaggaaaaagaaaaagctggaaagtcta
cagggggctccttatcacctaaaggatggggacatcattggggtcaagaatcttttgctt
gatgactggacagacttcagctctgaaattgaccgcattggaaaagaaaagcagcagcag
cagcagcgcccagcgaatggaaacaaaagtctgcacgcagaaggattgcagaataatacg
gctggaagcaatggaagggcaaagtcgaaggcccggaaagcggagacctctctctcaatc
cgagtgggcgtattcagatag
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integrated database retrieval system
