Xenopus tropicalis (tropical clawed frog): 100488009
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Entry
100488009 CDS
T01011
Symbol
lama1
Name
(RefSeq) laminin subunit alpha-1 isoform X2
KO
K05637
laminin, alpha 1/2
Organism
xtr
Xenopus tropicalis (tropical clawed frog)
Pathway
xtr04510
Focal adhesion
xtr04512
ECM-receptor interaction
xtr04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
xtr00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
100488009 (lama1)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
100488009 (lama1)
09142 Cell motility
04820 Cytoskeleton in muscle cells
100488009 (lama1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Laminin_G_1
Laminin_G_2
Laminin_EGF
Laminin_B
Laminin_N
Laminin_I
Laminin_II
Laminin_G_3
Motif
Other DBs
NCBI-GeneID:
100488009
NCBI-ProteinID:
XP_002938099
Xenbase:
XB-GENE-968308
UniProt:
A0A8J0QPC2
LinkDB
All DBs
Position
6:105767197..105865625
Genome browser
AA seq
3100 aa
AA seq
DB search
MLCRVLLFLLLGAAVRCHLRGLFPAILNLASNAHISTNATCGEMGPEMFCKLVEHVPGRP
VRNPQCRICDQNSINPKERHPISNAIDGTNDWWQSPSIQNGRVYHWITITLDLKQVFQVA
YVIIKAANSPRPGNWILERSVDGVEFMPWQYYAISDTECLTRYNVTPRIGPPTYKRDNEV
ICTSYYSRLVPLEHGEIHTSLINGRPSADDPSPALLDFTSARYIRLRLQRIRTLNADLMT
LSHRDLRDVDPIVTRRYYYSVKDLSVGGMCICYGHARSCPWDEVSLKFQCQCERNTCGES
CNECCPGYHQNPWRPGTISVGNKCEKCNCHNKAEDCYYDQGVADRNMSLNINNQYIGGGV
CLNCTQFTAGINCETCIEGYYRQHKVSPYEDNPCIPCECDVFGSVNSVCVVDDNHAKPGS
SPGQCQCKEGYTGIKCDQCKFGFKGYPNCVRCNCSLVGSVNEDPCAEQCVCKDNVEGENC
DRCKAGFYNLQERNPEGCTECFCFGVSGVCDGLFWHTTKVSDVVGWHISDLQGTQRIQPK
QDQFDGPHQISVNNSDARKAFQSAFFWDAPSSYLGNKLVSYGGYLRYTVSYDIPEDSADS
ELISDVDVIIKGNGHTLSTRGDGVQLQPFEEHTAELKLVPDNFVDFSTRKPVDRDRLMTV
LANINHLKIRANYNLAKNTVTRLSSVTMDIAQPNVIAFLPAVQVENCECPPGYAGTSCES
CSPGFYRVGGTLFGGICQPCECNGHATECDIHGVCFDCQHNTTGPHCDQCLPGYYGNPLY
GTPQDCQPCTCPLSIPSNNFSPTCHLSSDGEVICDQCPPGYSGSRCDKCANGYFGNPTMP
GGLCVPCDCNGNVDPSETGHCDSVTGECLKCIDNTAGSHCEICADGFYGDAVFAKNCTAC
RCHPNSSISATCHHETGLCECKINVLGQRCDTCVHGHYGLTTGLGCHPCNCSQMGSISDA
CNDLGQCPCVPGVAGLKCDICAHGFYAFQEGGCSPCDCAHTQNNCNPMTGECICPPHTLG
PKCDSCEANYWGHDPELGCLNCNCSIAGSQTLQCDLSSGQCPCRDGFGGHTCNTCAFGFR
KYPSCIACDCDPSGTQSAWCDDTQTVCSCEEDAGICACKGNVVGSYCNECKTGTFALRAD
NPLGCTPCFCSGVSQLCTETDGYVRIPISLIPDQPLLHVVSLSNQDGTTDGVFSEFPEML
LDAGMVQQRLNSEAFYWQLSDQFLGNKMMSYGGWLTYVITYYAVGDSGISDFEPHILMKG
GRFSKLVIYADIPPPANRLRSEIQISLTENNWKYFNAVSDRSVSRSDFMSVLENVDYILI
KASYGYGLHQSRIANISMDIAVEASEMHSGREVAHLIEICECPLGYTGLSCQDCAPGYYK
EKPMETSVRGSQSLIARCVPCQCNNHSEICDPDTGKCQDCRDNTDGHHCHVCASGFYGRV
TGTIADCSLCACPKGNTQSFSPTCVLEGISDFRCDACLPGYEGQYCERCSLGYYGNPNEP
GGTCQKCDCNFSGSLNNDCDGMTGQCSCKPGVTGRLCDTCEIRHILLDQECISCDDDCTG
PLLDDLDSLHMAMHSVNLTGIIPVPYGILSQLENVTQDLQDSVSRRANTTLIEKATKQLS
KMSETTDELQLRMAQMTSHGEAVNNSTIRTLNKTQELVAFIEKMHETIKVLVEVAESLND
TMANDTQLSNSTLLNYQDDVSSMLGHMTSKSFKDQQLIATEHLKASEGLLSKVQKDFGKP
HQDLRKIKNSLQATLEKHTRNLQSARDILLEASTNTNSTNHLLVSVQKNLADYNVKSLNL
EENKNRSMLLVEEGLCLVDDAVLLAEDTINATSVLEAHQEELILWNTKLRHHVDHLVMQM
AKRDALELVYKAEDHAADLMKISESMNSSLLDIRDTTLNATVAVLTKSEISNMVEQAWAL
ADQSNHTITEAQESVSLQSTCERSMMFSRQLLNEAKNLSRNTEGLMTDLNKLKTKVAKIQ
NRTRMFTLQINKHLLALTMLPNDTSEKLHNAKELALSANASAAGTLSHIMRFNEEVLNTT
SELSKVNDTMQKTYKLLKDSKKTAVSAGNKIKEVETQANILLERLKPLKLLEENLSRNLS
EIKELISQARKQAASIKVAVSADRDCVRSYKPEIYSTSFNTLTLNVKTSEPDNLLFYIGS
SNKTDFMAVEMANGKVSFLWDLGSGTMRLEGPDLRINNNKWHKIDIERFGRSGTLKVEEV
SSSQKSASTTSVSPGTSAILHVDNSTLMFVGGLGGQIKKSPAVLTTDFKGCMGEAFLNGK
SIGLWNYVERKGKCGGCFSSPQEEDNAFHFDGSGYSIVEKTLRSTATQIIIHFRTFSPNG
LLLYLASNGTRDFLSVEIVDGKVRVSVELGSGPLVLTSDERYNDGLWYKVAFHRNRKQGV
LMIMDSYNSSNSRETKQGEAPGVASDLNRSEKDPIYIGGLPRSRTVRRQLSSRSYVGCIK
NLEISRSNFNLLKNAYGVRKGCKLQPIRSITVLNNGYVEMLPISLLPESEMMVSFSTLND
TGIILAGLGKGTEKRIRRQAHLPFFAIMLINGHVEVHINAVDGAGTRKLLIKSPSGSYSD
GQEHSIILIRNKRLVSVQVDEGKPSEMKLNGPSVESAAINTSSFYVGGVPSKMAAPMLKT
SQSFYGCIRNVILNMEQMDFTKVLMYEHIHMDSCLLTEKPKPIVQVEEQEVQPTHIPARP
VTERKVPVTTVQETHITKANNKPVQCTDEMLPDHVPDAHQFGLTTGSHIVLPFNQSTVRR
KLSVQMTLRTFATSGLIYYMAHQNQVDYAALQLVEGKLFFLLDTGKGRTVTSHSADISDG
KWHTVTTEYIKRKGTITVDGQESVSASAPGDSSTLDVEGKLYLGGLPLDYTAKNLGNVTH
SIPACISNIMINSKKLQKDNAISIHAVKKCYALAQKGTHFEGTGYAALVKEGYKVRSDVN
ISLEFRTTAMNGVLLGISSAKVDAIGLEIVNGKVFFHVNNGAGRITAVYTPQNTSPLCDG
KWHKIQANKIKHQIVLTVDGTSVQAESPNVQSTSADTNNPVYVGGYPADVKQNCLTSQTS
FRGCIRNLKLVKGTQIEANDFSRAFELRGVIPHSCPGTEP
NT seq
9303 nt
NT seq
+upstream
nt +downstream
nt
atgctctgccgagtgctgctgttcttgctcctgggcgctgcggtccgctgccatctcaga
ggcttgtttcctgccattttaaatctcgcaagcaatgcacatatttccaccaatgctacc
tgtggggagatgggtccagagatgttctgcaagcttgtggaacatgtgccaggaaggcca
gtccgcaatccacagtgtcgtatttgtgaccagaacagcatcaatcctaaagaaagacat
ccaatatctaatgccattgatggcaccaatgactggtggcaaagtccaagcatacagaat
gggagagtttaccactggattactataaccctggatttaaaacaagttttccaagtggca
tatgtaattattaaggcggcaaattctccacgacctgggaactggatcttggaacgctct
gttgacggagttgagtttatgccatggcaatattatgcaattagtgacaccgagtgcctg
acccggtacaatgtgactccaaggattggccctccaacctacaaaagagataatgaagtc
atatgcacatcttattattccaggcttgtaccgctggagcatggagagattcacacttct
ttgattaatggaagaccaagtgcagatgatccctccccagcattactggattttacctcc
gcaagatacatccgcctccgactgcagcgcattcggacactcaatgctgatctcatgacc
cttagtcaccgggacctcagggatgtagatccaatagtaacaagaaggtactactattca
gttaaggatttatctgttggtggtatgtgtatctgctatggacacgctcgcagctgccct
tgggatgaagttagcctgaaatttcagtgccaatgtgaacggaacacttgtggagaaagc
tgcaatgaatgttgcccagggtaccaccaaaacccatggcggcctggcaccatttcagtt
ggtaacaaatgcgagaaatgtaactgtcataacaaagcagaagattgttactatgatcaa
ggtgttgcagatcgaaatatgagcttgaacattaataatcagtatatcggtggaggagtt
tgtctcaactgcactcagtttacagctggaataaactgtgaaacatgtattgaaggctac
tatagacaacataaggtttctccatacgaagataatccatgcattccttgtgaatgtgat
gtctttgggtctgttaattctgtgtgtgttgttgatgataatcatgccaaaccaggttct
tctccaggtcagtgtcagtgcaaagaaggttacaccggaataaaatgtgatcagtgtaaa
tttggcttcaaaggataccctaactgtgtgaggtgcaattgcagtttagtggggagtgtc
aatgaggatccttgtgctgagcaatgtgtatgtaaggacaatgtggaaggtgagaactgt
gatcggtgtaaggctggcttctataacctgcaggaaaggaatccggaaggatgcactgaa
tgtttttgtttcggtgtgtctggggtctgcgatggcttattttggcacactactaaggta
tctgatgttgttggctggcatattagtgacttgcaaggaacacagcgtattcagcccaag
caagaccagtttgacggtcctcatcaaataagtgttaataattcagatgctaggaaggca
tttcaatcagcttttttctgggatgctccctcatcttaccttggaaataagctggtatcg
tatggagggtacttgcgctacacagtgtcttatgatattccagaggacagtgcagacagt
gagttaatttctgatgtggatgtcattattaagggaaatggccatacattaagtaccaga
ggtgacggtgtgcaacttcaaccctttgaggagcatactgcagaattaaagctggtcccg
gacaacttcgtggatttcagtacacgcaagcctgtggatcgggacagactgatgactgtt
cttgcaaatataaaccaccttaaaatcagagctaactacaaccttgcaaaaaacacagta
acaagactgagctcagttacaatggatattgcacaacccaatgttattgccttcttgcct
gctgttcaggtagaaaactgtgaatgtcctcctggttacgctggcacatcttgcgagtct
tgcagtcctggattctatcgtgttggtggaacactctttggaggtatttgccagccatgt
gaatgcaatggccatgcaactgaatgtgacatccatggagtgtgttttgattgtcaacac
aatactacaggtcctcattgtgatcagtgtttgccaggttattatggaaatcctttatat
ggaaccccacaggactgccagccatgcacttgccctttgagcatcccttccaacaatttt
agtccgacatgtcatttgtccagtgatggggaagtgatctgtgaccagtgcccgcctggt
tattccggttcacgatgtgacaagtgtgcaaacggttactttggaaacccaaccatgcct
gggggcctgtgcgtgccttgtgattgcaacggcaatgtagacccttctgaaactggccac
tgtgattctgtgacaggagagtgccttaaatgcattgataacacagctggaagccattgt
gaaatatgtgctgatggcttttatggggatgcagtgtttgctaagaactgtactgcatgc
cgatgccatccaaatagctccatttcagccacttgccaccacgagactggattatgtgag
tgcaaaatcaatgtccttggacaaagatgcgatacgtgtgtgcatggccattacggcttg
actactggccttggctgccatccctgtaactgtagccaaatgggctccatctctgatgct
tgtaatgatttagggcaatgcccctgcgttcctggcgtggctggattaaagtgtgacatt
tgtgctcatggattttatgcattccaggagggtggctgctcaccttgcgattgtgctcac
acacagaacaactgtaaccccatgactggagagtgcatttgtcctcctcacacacttgga
cctaaatgtgattcctgtgaagcaaactactgggggcatgatccagagctgggctgtctg
aactgcaattgcagcatcgcaggttcccaaactcttcagtgtgatctgtcatctggccag
tgtccttgcagagatgggtttggtgggcatacttgcaatacttgtgcattcggattcagg
aaatatcccagctgtattgcttgtgattgtgaccccagtggtacccagtctgcctggtgt
gatgacacacaaactgtgtgcagctgcgaagaagatgctggaatctgcgcttgtaagggc
aatgtggtggggagttactgtaatgaatgcaagactgggacctttgctctgcgtgctgac
aatccgctgggctgcaccccatgtttctgttctggagtatcacagctttgcacagaaaca
gatggctacgttcgtattcctatttccttgatcccagaccagccgctgcttcatgttgtg
tctctaagtaatcaggatggaactacagatggggtattttcagagttccctgagatgtta
ctcgatgcaggcatggttcaacagcgtctgaattcagaagcattttactggcagttatct
gatcagttcctgggcaataagatgatgagttacggaggttggctgacatatgttattaca
tattatgctgtgggggattccggtatatctgactttgagccacacattttaatgaagggt
ggtcgttttagcaagctagtcatctatgcagacatccctccgcctgcaaacagacttaga
agtgagattcagattagcctgacagagaataattggaagtacttcaatgctgtatctgac
cggtcagtctcaagatcagatttcatgtctgttttagagaatgttgattacattcttata
aaggcatcctatggctatggattgcaccaaagcagaatcgcgaacatatcgatggatatt
gctgtagaggcatcagaaatgcattctggtcgggaagttgcccatctcatagagatatgt
gaatgtccccttggatatacaggactttcctgccaggactgcgccccggggtattacaaa
gagaaaccgatggagaccagtgtgcgaggctcacaatcattgattgcccgctgtgtaccg
tgccagtgcaacaaccacagtgagatttgtgatccagacaccgggaagtgccaggactgc
agagataatacagatgggcatcactgccatgtatgtgcttctggcttttatggcagagtc
actggaacaattgcagattgctctctgtgcgcttgtcctaaaggcaacacccaaagtttt
agcccaacctgtgtgcttgaaggaattagtgatttccgctgcgatgcctgcctcccaggt
tatgaagggcagtactgtgaacggtgctccctcggttattatggaaatcccaatgaacca
ggtggcacctgccagaagtgtgactgcaactttagtgggtcactgaataatgactgtgat
ggaatgactggccaatgttcttgcaagccaggagttacagggcgcctttgtgacacttgt
gaaataagacacattcttctggaccaagaatgcatatcttgtgatgatgattgcacagga
ccactgctggatgatctggatagcttgcatatggctatgcactctgttaacctcacaggg
atcatcccagtgccatatggtatcctatcacaactggaaaatgtcacacaagatttacag
gattctgtatccagaagagccaacacaactctcatagagaaggcaacaaagcaactgtca
aagatgtctgaaaccacagatgaactgcagctacgaatggcacaaatgaccagccatgga
gaagcagtgaacaattcaaccatcagaaccctgaataaaactcaagaactggtggcgttc
attgaaaaaatgcatgaaaccattaaagtcttggttgaagtggcagaaagtttaaatgac
acaatggccaatgacactcagctatctaacagcacactgctgaattaccaagacgatgtt
tcatctatgctcgggcatatgacttcaaaatcatttaaggatcaacaactaattgctact
gaacatctcaaagcatcggaaggattactgagtaaagttcaaaaagattttgggaagcca
catcaagatctaagaaagataaaaaacagccttcaagctactctagagaaacacaccaga
aatttacagagcgccagagatatcctgctggaagcttctacaaacaccaacagcaccaac
catctgcttgtttctgttcagaagaacctggctgattataatgtaaaatctttaaatctt
gaagaaaacaagaaccgttcaatgctcttggtagaggagggtctgtgccttgtggatgat
gctgttctgctcgcagaggacactattaatgcaacatctgttttggaggctcaccaagaa
gagctgattctgtggaatacaaagttaaggcatcatgtggatcatctggttatgcagatg
gctaaaagggatgcacttgaactggtctataaagcagaagaccatgcagccgatctcatg
aaaatttcggaatcaatgaacagttctcttttagatataagggatacaacactgaatgcc
actgttgccgtcctcactaaatcagagattagtaacatggtagaacaagcttgggcgctg
gcggaccagtctaaccacacaattactgaagctcaggagtcggtgtctctgcaatccaca
tgtgagagatctatgatgtttagcaggcagcttctaaatgaagccaagaatttaagtcgt
aacacggaaggtctaatgacagacttgaataaactaaaaacaaaagtggctaaaatacag
aaccgaactcgtatgtttaccctgcagataaataagcatctccttgcactcacaatgtta
cctaatgatacaagtgaaaaactccataatgccaaagagcttgccttgtctgccaatgcc
agtgccgctggcactttaagccatattatgaggttcaacgaggaagtgctcaacaccacc
tcagaattgtccaaggttaatgacaccatgcagaaaacctacaaactactaaaagactca
aaaaagactgctgtttctgcgggaaacaaaataaaagaagtggagacacaagccaacatt
ttattggagaggctgaaacctttaaagttacttgaagaaaacctcagcagaaatctgtcg
gaaataaaggagctgatcagtcaggcacggaaacaggcagcttcgataaaagtggctgtt
tcagccgacagagattgtgttcgctcgtacaaaccagaaatctattctactagttttaac
actttaacattgaatgtgaaaaccagcgagccagacaaccttctgttttacataggcagc
agcaacaaaacagacttcatggcagttgaaatggcaaatgggaaagtttccttcctttgg
gacttgggctctggcaccatgagactagaagggcctgatttgcgaataaacaataacaaa
tggcacaaaatagatatcgagagatttggtaggtcaggcacactgaaagtggaagaagtt
tcctcctcacagaaatctgcatctacaacatcagtgtctccaggaacatcagccatactc
catgtagacaactccactctaatgtttgttggagggcttggaggacaaataaagaagtcc
ccagcagtcttgacaacagattttaaaggatgtatgggtgaagcattccttaatggcaaa
tcaattggcttatggaactatgttgaaagaaagggcaaatgtggtggatgcttttcaagc
ccgcaggaagaagacaacgctttccacttcgatggcagtggatattccattgtggaaaag
actctccgttcgactgcgacacagataatcatccatttccgcaccttctctccaaatggg
ctcctgctgtatctcgcttccaacggaacgagagatttcctatctgtggaaatagtggat
gggaaggtgagagtttcagtggaacttggatcaggacctctagttctgacatcagacgag
cgttacaatgatggattatggtataaagttgccttccaccgcaacagaaagcaaggtgtt
ttaatgattatggactcctacaactccagcaactccagagaaaccaagcaaggagaagct
cctggtgttgcctcagaccttaacagatcagaaaaggaccctatatatataggtggactt
ccgcgctccaggactgtcaggagacagctcagcagtaggtcctatgttggatgcataaag
aatctggagatttcacgttccaacttcaacttactgaaaaatgcctatggtgtaaggaaa
ggctgcaaactgcagcctattcgtagcataactgtcctaaataatggctatgtggaaatg
ctgcccatatcactgttgccagaatcagagatgatggtttcattttctacattgaatgac
actggaattattttggctgggcttggcaaggggacggagaaacgcattcgcaggcaagct
catctgccattctttgctataatgctcattaatgggcatgttgaagtgcatatcaatgcc
gtggatggagctggcacaagaaaactcctgataaagtctccatctggatcatacagcgat
ggacaggaacattcaattattcttattcgaaacaagagacttgtgagtgtgcaggtggat
gagggaaagccatcagaaatgaaactgaatggcccctctgtggaatcagcggctataaat
acatctagcttctatgttggaggagtgccttctaaaatggctgcccctatgctgaaaaca
agccagtcgttctatggatgcattcggaatgttatcctaaatatggagcagatggatttc
acaaaggtgttaatgtatgagcacattcacatggacagctgccttctgactgagaaacct
aagcccattgttcaagtggaagaacaggaagtgcagccaacacatatacctgccaggcct
gttacagaaaggaaagtacctgtgactacagtgcaagaaacccacatcaccaaagcaaat
aataaacctgtacagtgcactgatgagatgctgccagatcacgtgcctgacgcgcatcag
tttggacttacaactggaagccacattgtgctgccttttaaccaatctacagtcagaaga
aagttgtcagttcaaatgactctaagaacatttgccaccagtggcctcatttactatatg
gctcaccaaaatcaggttgactatgctgcacttcagcttgttgaaggaaagctctttttc
ctattggatacgggaaaaggtcgtactgtaacctctcattcagctgacatcagtgatggg
aaatggcacacggtgacaactgagtacattaaaagaaaaggcaccattactgttgatgga
caagaatctgtatcagccagcgccccaggggacagtagcactctagatgtggaagggaag
ctgtatcttggtgggctgccattggattacacagccaagaacctaggaaatgtcactcat
agtatcccagcatgcatcagcaacattatgataaacagcaaaaagctccagaaagataat
gccatctccatccatgctgtgaagaaatgctacgcactagcacaaaagggaacacacttt
gaagggactggctatgcagcactagttaaggaaggttacaaggtgcgatcggatgtgaac
atcagcttggagttccgcactactgctatgaatggcgtccttctcgggattagcagcgct
aaagttgacgccattggtttggagattgtaaatggaaaggttttctttcacgtcaataat
ggtgctggcagaataacagctgtttacactcctcaaaacaccagccccttgtgtgatggg
aaatggcataaaatccaggccaataaaataaaacatcagattgtcctcactgttgatggg
acctcggttcaggcagaaagccccaatgtacagtctacctctgcagacaccaacaatcca
gtttatgttggggggtacccagccgacgtaaagcaaaactgcctgaccagccagacttca
ttccgcggctgcatacggaacctgaagcttgtgaagggcacacagatagaggcaaatgac
ttcagcagagcctttgagttgcgcggtgtcatccctcattcctgccctgggacagagcca
tga
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integrated database retrieval system
