Xenopus tropicalis (tropical clawed frog): 100488616
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Entry
100488616 CDS
T01011
Symbol
colgalt1
Name
(RefSeq) procollagen galactosyltransferase 1
KO
K11703
collagen beta-1,O-galactosyltransferase [EC:
2.4.1.50
]
Organism
xtr
Xenopus tropicalis (tropical clawed frog)
Pathway
xtr00310
Lysine degradation
xtr00514
Other types of O-glycan biosynthesis
xtr01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
xtr00001
]
09100 Metabolism
09105 Amino acid metabolism
00310 Lysine degradation
100488616 (colgalt1)
09107 Glycan biosynthesis and metabolism
00514 Other types of O-glycan biosynthesis
100488616 (colgalt1)
09180 Brite Hierarchies
09181 Protein families: metabolism
01003 Glycosyltransferases [BR:
xtr01003
]
100488616 (colgalt1)
Enzymes [BR:
xtr01000
]
2. Transferases
2.4 Glycosyltransferases
2.4.1 Hexosyltransferases
2.4.1.50 procollagen galactosyltransferase
100488616 (colgalt1)
Glycosyltransferases [BR:
xtr01003
]
O-Glycan biosynthesis
O-linked Gal type
100488616 (colgalt1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Glyco_transf_25
Anp1
Glyco_tranf_2_4
Motif
Other DBs
NCBI-GeneID:
100488616
NCBI-ProteinID:
XP_031755217
Xenbase:
XB-GENE-952955
UniProt:
A0A6I8RI28
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Position
3:complement(135009768..135039946)
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AA seq
612 aa
AA seq
DB search
MSQPGVERLLKGLQLLLLVVLGLSAGYFPEERWNPESPLRRPTVLIALLARNSEGSLPEV
LGALERLHYPKERISLWVATDHNIDNTTQMLREWLINVQNQYHHVEWRPQEHPRWFRDEE
GPKHWSHGRYEYIMKLRQAALTSAREMWADYIFFLDADNLLTNPETLNRLIAENKTIVAP
MMESRAAYSNFWCGMTTQGYYRRTPAYMPIRRRERKGCFPVPMVHSTFLIDLRKEASQQL
DFYPPHADYTWAYDDIIVFAFSCRQADVQMFICNKEIYGYLPVPLRSHSTLLDETDNFLH
TKMEAMVKGPLVPQSILVSVPEKIPDKMSLDEIFLINLKHRQDRRERMKRTLYELQIDYK
LVDAVYGKTLNQTQVDKMGIKMLPGYKDPYHGRPLTRGEMGCFLSHYNIWKEISERSLEA
SAVFEDDLRFEIFFKRRLQTLLHDLEVAKLDWDLIYLGRKRMQVEEPEEPVPGVRNLVVS
DYSYWTLGYLISLRGARKLLDAEPLVKMLPVDEFLPVMYDKHPNSNYSAHFSPRDLLAFS
VEPLLLYPTHYTGDEGYISDTETSVLWDNVTQPTDWDRDKSRKTQQQEKLRSEALNTPSL
GSPFDNAARDEL
NT seq
1839 nt
NT seq
+upstream
nt +downstream
nt
atgtcccagcccggagtggagcggctcctgaaggggctgcagttactgctgctggtagtg
ctggggctcagcgcaggatacttcccggaagagcgatggaacccggagtctccgctccgt
cgccctacggtcctgatcgccctgttggccaggaactccgaaggttcccttcctgaggtg
ctgggagcgctggaacggctgcactacccgaaggagcgtatctcgctatgggttgctaca
gatcataatattgacaatacgacccagatgttgcgcgagtggctgatcaatgtgcagaat
cagtaccaccacgtggagtggagaccgcaggagcacccaaggtggttcagggacgaggaa
ggccccaagcattggtcccacggccggtacgagtatatcatgaagctacggcaggcagcg
ctaacctccgcgcgggagatgtgggccgattacatattttttttggatgccgataaccta
ctgaccaaccctgagactttaaatcgactgattgccgagaacaagaccatagtggctccc
atgatggagtccagggcagcgtattccaatttctggtgtggcatgacaacccagggctat
taccggcgcactcccgcatacatgccgatccgccgcagagaacgcaaaggttgctttccc
gtccccatggttcactctacctttctgatagaccttcgtaaggaggcttctcagcagctg
gacttctacccgcctcacgcagactacacgtgggcatacgatgacatcatcgtgtttgcg
ttttcctgcaggcaggcagacgtacagatgttcatttgcaataaagagatctatggctat
ttgcccgtccctctccgctctcacagcactctcttggatgagactgacaactttcttcac
accaagatggaagccatggtgaagggccctctggttcctcagtcaattttagtgtccgta
ccggagaaaatcccagacaagatgtctttggatgagatcttcctcattaacctgaagcat
cggcaagacaggagggagcgtatgaagaggacgctgtatgagctccagatagactataag
ctggtcgatgccgtgtatggaaagaccctaaatcaaacccaggtcgacaaaatgggtata
aagatgctccctggctacaaggatccataccatggtcgccccctgacccgcggagagatg
ggatgttttctcagtcactacaacatctggaaggagatctctgagcgctccttggaagct
tcggcagtgttcgaggatgacctgaggtttgagatcttctttaagcggcggctgcagacg
ctcctgcatgatctagaagtagccaagctggactgggacctcatttacctgggcaggaag
aggatgcaggtcgaagaaccagaagagcctgtgccaggcgtccgtaatttggtcgtgtcc
gactattcctactggaccctggggtatctgatctccctgcgcggggctagaaagctgcta
gatgctgaacctcttgtgaagatgctgcctgtagacgagttcctaccagtcatgtatgac
aagcaccccaactccaactactccgcccatttctccccgcgagaccttctggccttctca
gtggagcctctcctcctgtatcccacgcactacactggggacgagggctacattagcgac
acggagacctcggtgctgtgggacaatgtgactcagcccaccgactgggacagagacaag
tctcgcaagacacagcaacaggagaaactgcgcagcgaggctctaaacaccccttccctg
ggctccccgtttgacaacgccgcccgcgatgagttatga
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