Xenopus tropicalis (tropical clawed frog): 100498395
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Entry
100498395 CDS
T01011
Symbol
usp13
Name
(RefSeq) ubiquitin carboxyl-terminal hydrolase 13 isoform X1
KO
K11836
ubiquitin carboxyl-terminal hydrolase 5/13 [EC:
3.4.19.12
]
Organism
xtr
Xenopus tropicalis (tropical clawed frog)
Brite
KEGG Orthology (KO) [BR:
xtr00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
xtr01002
]
100498395 (usp13)
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
xtr04121
]
100498395 (usp13)
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
xtr04147
]
100498395 (usp13)
Enzymes [BR:
xtr01000
]
3. Hydrolases
3.4 Acting on peptide bonds (peptidases)
3.4.19 Omega peptidases
3.4.19.12 ubiquitinyl hydrolase 1
100498395 (usp13)
Peptidases and inhibitors [BR:
xtr01002
]
Cysteine peptidases
Family C19: ubiquitin-specific protease family
100498395 (usp13)
Ubiquitin system [BR:
xtr04121
]
Deubiquitinating enzyme (DUB)
Ubiquitin-specific proteases (UBPs)
UBP/USP
100498395 (usp13)
Exosome [BR:
xtr04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
100498395 (usp13)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UCH
zf-UBP_var
UBA
zf-UBP
UCH_1
UBA_4
Motif
Other DBs
NCBI-GeneID:
100498395
NCBI-ProteinID:
XP_002931622
UniProt:
A0A8J0QKT1
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All DBs
Position
5:complement(108704520..108747924)
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AA seq
844 aa
AA seq
DB search
MAEDLGELLVPYMPTIRVPKSGDRVYKTECAFSYDSPESDGGLYVCMSTFLGFGREHVER
HYRKTGQSVYMHLKRHIRLKATGASGGAFPKRINGRLFLDLENNTEMNTEDYEYEDEAKL
VIFPDHFEIALPNIEELPALVTIACDAVLNSKSPYRKLDQESWEEELQVSKFANNLVQID
NGVKIPPSGWKCSKCDLQENLWLNLTDGSIMCGRWFCSGSGGNGHALEHHKQMGYPLAVR
LGSITPDGADVYSFDEEEAVIDPHLAKHLAHFGIDMLQMQGSENGVLDNEVKPRVNEWEV
IQETGLKLKPMFGSGYTGIKNLGNSSYLTTVMQVIFSIPEFQRAYVGNLTRIFDYAPLDP
TQDFSTQMAKLGHGLLSGQFSKPPMKSELIEQVMKEEHKPQPKGINTRMFKALMSKGHTE
FSSNRQQDAEEFFLHFINLVERNSIGAENPSDVFRFLVEERTQCCQSRKVRYTERVDYIM
QLPVPMETATNKEELIAYDLKRREAESAKRPPPELVRAKIPFSACLQAFTEPENVPDFWS
SALQAKSAGVKTSRFASFPEYLVVQIKKFTFGLDWVPKKLDVSIDMPDLLDINHLRATGL
KSGEEELPDIAPPIIIPDDPNDHSRNHFMEYPDIDESSVMQLAEMGFPLEACRKAVYYTG
SMGAEVAFNWIIAHMEEPDFAEPLIIPGCGTVTSTSSHGQNALLNQPPEEIVALICSMGF
PRNHALQALRATNNNLERALDWMFSHPESEEGADNVSGCVDTENNPNGIITDSEQEGPRI
KDGNGRYELFGIISHAGTSTMSGHYVCHIKKEGRWVIYNDHKVSASERPPKELGYIYFYH
RISC
NT seq
2535 nt
NT seq
+upstream
nt +downstream
nt
atggctgaagacctgggagagctgctggtcccttacatgcccaccatcagggtacccaag
tcaggggacagggtctacaagacggagtgcgccttctcttatgactcccctgagtctgat
ggaggtctgtatgtgtgcatgagcacattccttggatttggcagagaacatgtagagcgg
cattataggaaaacagggcagtcagtctacatgcacttaaagcgccacatcagactgaaa
gcaactggcgcatcaggcggggcctttccaaaaagaataaatgggagactatttttagat
ctagaaaataacaccgagatgaacactgaagattatgaatacgaagatgaagcaaaactt
gttatattcccagatcactttgaaattgccttacctaatatagaagagctacccgcattg
gtaacaatagcctgtgatgcagtcctcaattcaaagtctccatatagaaagcttgaccaa
gaatcatgggaagaagaactccaggtttcaaagtttgcaaacaaccttgtgcaaatagat
aatggtgtgaagattccaccaagtggctggaagtgctccaagtgtgatctccaagagaac
ctgtggttgaacttgacagatggctccattatgtgtggaaggtggttttgttcaggcagt
ggtgggaacggacacgctcttgaacaccataagcaaatgggctaccctttggcagtaaga
ctaggaagtatcactccagatggggcagatgtgtattcctttgatgaagaggaagcagtt
atagatccccacctggccaagcaccttgcgcactttggcattgatatgctgcagatgcag
ggaagtgagaatggtgtcctggacaatgaagtcaaaccaagagttaatgagtgggaggtt
atccaagaaactggattaaagttaaagccaatgtttggctctggctacactggcattaaa
aaccttgggaacagctcctacctcactacagtgatgcaagtcatctttagcatccctgag
tttcagagagcatatgtggggaaccttacacgaatatttgattatgcacctctggaccca
acacaggatttcagcacacagatggctaaacttggccatggtctgctgtcaggacagttc
tccaaacctccaatgaaatctgagctaatcgagcaggtgatgaaagaagaacacaagcct
caaccaaagggcattaacactcgaatgtttaaagctttaatgagcaaaggtcatacagaa
ttttcctcgaacagacaacaagatgcagaagaattttttctacactttataaacctggta
gagagaaatagtataggcgcggagaacccaagtgatgtcttcaggtttttagtggaggaa
aggacacagtgctgccagtcaaggaaagtgcgttatactgaaagagttgactacatcatg
caactgccagtgcccatggaaactgctacaaataaagaggaactgattgcatatgacctg
aaaagaagagaagcagagagtgcaaagaggcctccaccggagctggtccgtgccaagatc
ccattcagtgcctgcttacaggcctttacagagcctgaaaatgtgcctgacttctggagc
agtgctcttcaagccaagtctgcgggtgttaagacatctcgctttgcttcattccctgaa
tacctggtagtccagataaagaagtttacatttggccttgattgggtacccaagaaactt
gatgtgagtatagacatgccagatcttcttgacatcaaccatctcagagctacagggctc
aaatcaggagaagaggaacttccagatattgctcctcctattatcattcctgatgatccc
aacgatcattccaggaaccactttatggaatatcctgacatagatgaatcttcagtgatg
cagttggcagaaatgggctttcctcttgaagcctgccggaaagcagtgtattacacaggg
agcatgggggcagaagtggcatttaactggattattgcgcacatggaagaaccagatttt
gcagaaccgttaatcattcctggttgtggaacagtgacctctacatcatctcatgggcag
aatgcgctattaaaccagccaccagaagagattgtagcacttatttgctctatgggtttc
ccaagaaatcatgctctccaggcactaagagccacaaacaataatcttgaaagagctctg
gactggatgttctctcacccagagagtgaagaaggagctgataatgtctctggctgtgtg
gatacagagaacaatcccaatggcattatcactgacagtgaacaggaaggccctagaata
aaggatggcaatggaagatatgaactctttggaattatcagtcatgcaggaacatctaca
atgtcgggacattatgtctgccatatcaaaaaggaaggaagatgggtgatttataatgac
cataaagtttctgcatcagagcgacctccaaaggaattgggctacatttacttctatcat
agaatatcatgttaa
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