Xenopus tropicalis (tropical clawed frog): 101732109
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Entry
101732109 CDS
T01011
Name
(RefSeq) LOW QUALITY PROTEIN: protocadherin gamma-B1
KO
K16496
protocadherin gamma subfamily B
Organism
xtr
Xenopus tropicalis (tropical clawed frog)
Brite
KEGG Orthology (KO) [BR:
xtr00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
xtr04515
]
101732109
Cell adhesion molecules [BR:
xtr04515
]
Cadherins
Protocadherins
101732109
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Cadherin
Cadherin_2
Cadherin_C_2
Cadherin_3
RET_CLD1
Acetyltransf_14
TMEM154
Motif
Other DBs
NCBI-GeneID:
101732109
NCBI-ProteinID:
XP_031754057
UniProt:
A0A8J1J865
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Position
3:complement(28304469..28309777)
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AA seq
843 aa
AA seq
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MCEKITYGGRPRTIIWQVVFFLFYLYETFAGQVQYSVYEESEQGFIIGNIANDLNMDIEE
LSDREFQIVSQDQKQYISVNLESGDLFVTERIDRETLCGTEEECFLDMKALMVNPLHIYT
VKVEIEDINDNAPIFXKNYFEAGISESALPGARFALGYAQDPDLGSNSVQSYGLSTNEYF
ILGERISSDGSKNPELVLEKPLDREKQNSIELMLTASDGGSPRKTGTALIKIVVYDANDN
YPVFSQDTYVVNINENAPNGSLVLQLHATDEDDGSNGEITYSFSHIPENALHIFRIDSQT
GELSKVGELDYEVTKRYTITVEAKDGGDLVSHCKVSVQVVDANDNAPVIIVNSFSSAISE
DSPPETVIALIRIYDGDTGENGEIVCQIPDILPFQLISLTDNYYKIVSLSRLDREQRSAY
NITILAKDKGLPSLCSNKTLQVTLTDINDNSPVFDKTNYIAYVPENNHPGTSVLHITALD
LDINENGKITYSIISTAIQGIPVSSHVSINSATGVVYALHAFDYEKIRELHFQVMAEDSG
SPSLSSNVSVRVCIIDWNDNYPKILYPSSDTEGAIYEFIPLPSEKGYLVTKVIAVDADSG
HNAWLSYHLLQVQEPSIFVIGHHTGEIRLARDLEETDSSRQKLVVMVKDSGEPSLSATVT
LNLIVAESFQVLPETNNKPIKLDTTSNITFYLVIAIAMISFLFILAVIAVVISKCRNSSS
SVVFGTFDRKCYPPVNFRCPSQLSDGTLPLPFSYDVCVTLDSSQNEFAFLRPSQTVPTEN
LIDTDVTGNDSEKKVISGSNLSQFEVAVSESALPGAHFALEKEPATMEVNPYIWVKRSKV
LLS
NT seq
2532 nt
NT seq
+upstream
nt +downstream
nt
atgtgtgagaagatcacatatggaggaagaccaaggacaattatatggcaagtagtcttc
tttctattctatttgtatgagacttttgctggtcaggttcagtactcagtatatgaggaa
tcagaacaaggattcatcataggaaatattgcaaatgatttgaacatggatattgaggaa
ttatcggatagagaattccaaattgtttctcaagaccaaaaacaatatataagtgttaat
ttggaaagtggagacctgtttgtcacagagaggatagatagagagacattatgtggcaca
gaggaggaatgcttcttagacatgaaagcactgatggttaatccactgcacatttacaca
gttaaagttgaaattgaagacattaatgacaatgcaccaattttttaaaaaaattatttt
gaagcaggaataagtgagtctgctttaccaggggcacggtttgcccttggctacgcacaa
gatcctgatcttggtagcaattctgtacagagctatggacttagcacaaatgagtatttc
atccttggagaaagaattagcagcgatggaagtaaaaatcctgaacttgtgctggagaag
cctttggatcgagagaagcaaaattccattgagttaatgctaactgcttctgatggaggt
agccctagaaaaactggcacagctttaattaagattgtggtttatgatgctaacgataac
tatcccgttttcagtcaggacacctatgtagtgaatataaatgaaaatgcaccaaatggc
tctttagttctccagttacatgctactgatgaagatgatgggtcaaatggagagataaca
tattcatttagtcacattccagaaaacgcgttgcacattttcagaatagattctcaaact
ggtgagttgtcaaaagtaggggagctggactatgaggtaacaaagagatacacaataacg
gttgaagccaaagatggtggcgacttagtttctcactgtaaagtctctgtccaggttgtc
gatgccaatgataatgcacctgtgataatagtaaattctttttcaagtgcaatttccgag
gattccccacccgaaacagtaatagcgctgattcgaatttatgatggagacactggtgag
aatggtgagattgtttgccagatccctgacatattaccattccaattaatatccttaaca
gacaattattataaaattgtgtctttatcaagattggatcgagaacaacgatctgcctat
aatatcacaattctagctaaagataaaggcttgccatcactttgcagcaacaaaacgctc
caagtgactttaacagatattaatgacaattctcctgtttttgataaaacaaattatatt
gcctatgtcccagaaaataaccatcctggaacatcagttctccatattactgctttagat
cttgacatcaatgaaaatgggaaaattacttatagtataatcagtacagctattcaaggc
atccctgtctcttcacatgtttccataaactcagcaactggagttgtttatgccctacat
gcttttgactatgagaagataagagaattacatttccaagtaatggctgaagacagtgga
tctccttctctgagcagtaatgtatctgttagggtttgtattattgactggaatgataac
tacccgaagattctctatccatcatcagacactgaaggagcaatatatgaattcatccct
cttccctctgagaaaggctatctagtaactaaagtgattgcagtggatgctgactctggg
cacaatgcatggctctcttatcatttattacaggtccaagaaccttcaatttttgtgatt
ggccatcacacaggggaaatcaggttggctagagatttagaagaaacagattcttcaagg
caaaaacttgtagtcatggtgaaggacagtggagaaccctctttgtctgcaacagttaca
ctaaaccttattgtagctgaaagctttcaagttcttcctgaaacaaataacaaacccatc
aagctggatactacatccaatataacattttatttggtaattgcaattgcaatgatttca
tttttatttattttggctgtgattgcagtggtgatttcaaaatgtagaaattctagttct
tcagttgtatttgggacttttgacagaaaatgctaccctccagtaaatttcagatgtcct
tctcagttgagtgatggaaccttgccattgcctttctcatacgatgtctgcgtcacactg
gattcaagccaaaatgaatttgcctttctcaggcccagtcagactgttccaacagaaaat
cttattgatactgatgttacaggaaatgattctgaaaaaaaagttatttcaggcagcaac
ctttcccagtttgaagtagcagttagtgaatctgctctaccaggagcacattttgctttg
gagaaagaaccagcaacaatggaagtaaatccatatatttgggtcaagagaagcaaagtt
ctgttgagttaa
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