Xenopus tropicalis (tropical clawed frog): 549604
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Entry
549604 CDS
T01011
Symbol
sec23b
Name
(RefSeq) protein transport protein Sec23B
KO
K14006
protein transport protein SEC23
Organism
xtr
Xenopus tropicalis (tropical clawed frog)
Pathway
xtr04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
xtr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
549604 (sec23b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
xtr04131
]
549604 (sec23b)
Membrane trafficking [BR:
xtr04131
]
Endoplasmic reticulum (ER) - Golgi transport
Forward pathways
Coat protein complex II (COP-II)
549604 (sec23b)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sec23_trunk
Sec23_helical
Sec23_BS
Gelsolin
zf-Sec23_Sec24
APP_E2
Motif
Other DBs
NCBI-GeneID:
549604
NCBI-ProteinID:
NP_001016850
Xenbase:
XB-GENE-974663
UniProt:
Q28DM5
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Position
5:37593706..37608904
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AA seq
767 aa
AA seq
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MATYLEFIQQNEERDGVRFSWNVWPSSRLEATRMVVPLGCLFTPLKERPDLPPVQYEPVL
CTRPTCKAVLNPLCQVDYRAKLWACNFCFQRNQFPPTYAGISEVNQPAELMPQFSTIEYI
VQRGPQTPLVFLYVVDTCLEEEDLQALKESLQMSLSLLPPDALVGLITFGRMVQVHELSC
DGISKSYVFRGTKDLTAKQIQDMLGLSKAAAPAQQGRPLQPQEQPFLSSRFLQPVHKIDM
NLTDLLGELQRDPWPVPQGKRPLRSTGVALSIAVGLLEGTLPNTGARIMLFTGGPPTQGP
GMVVGDELKTPIRSWHDIEKDNARFMKKATKHYEALANRTAANGHCIDIYACALDQTGLL
EMKCCSNLTGGEIVIGDSFNTSLFKQTFQRVFTKDPNGSFKMAFGANLDVKTSRELKVSG
TIGPCVSLNVNGPCVSENELGVGGTSQWKICALDPTTTLGIYFEVVNQHNAPIPQGGRGA
VQFVTQYQHSTTQKRIRVTTVARNWADAQSQIQHIEAAFDQEAAAVLMARLGVYRAETEE
GPDVLRWLDRQLIRLCQKFGQYNKDDPSSFRLSDSFSLYPQFMFHLRRSPFLQVFNNSPD
ESSYYRHHFARQDLTQSLIMIQPILYSYSFYGPPEPVLLDSSSILADRILLMDTFFQIVI
YLGETIAQWRNAGYHDMPEYENFKQLLQAPLDDAQEILQSRFPMPRYINTEHGGSQARFL
LSKVNPSQTHNNLYNWGQESGAPILTDDVSLQVFMDHLKKLAVSTAS
NT seq
2304 nt
NT seq
+upstream
nt +downstream
nt
atggcaacctacttagagtttattcaacaaaatgaggagcgggatggcgttcgcttcagc
tggaatgtgtggccctccagccgactggaagccacacggatggttgtacctttgggctgc
ctttttactcctctgaaggaacgtccagatctcccaccagttcaatatgagccagtgctt
tgcacaaggccaacctgcaaggcagtacttaatccactttgtcaggtggactacagagct
aaactgtgggcatgtaatttctgcttccaaagaaaccagttccctccaacatatgcaggg
atatcagaagtaaatcaacctgcggaattaatgccacagttttccacaattgaatacata
gtgcagcgaggtcctcagacaccactggtattcttatatgtggtggatacatgtcttgag
gaggaagacctgcaagctctcaaggagtccttacagatgtctctcagcctgctgccccca
gatgctctggttggtctgatcacctttggcagaatggtacaagtgcatgaactgagctgc
gatgggatctctaagagctatgtttttagaggcacaaaagatctgactgctaaacaaata
caggatatgttgggactttcaaaggctgcagccccggcacagcaaggaagaccactacaa
ccccaggagcagccttttttgtctagtcggttcttgcaaccagttcataaaattgacatg
aatctaacagacttgcttggggaattgcaacgtgatccctggcctgtgcctcaagggaaa
aggcctctacgatctactggtgttgctttgtctatagctgttggattattggaggggacg
cttccaaacactggagccagaataatgttgtttacaggtggtcccccaacacaagggccc
ggcatggtagttggagatgagctaaaaacacccattagatcttggcacgatattgagaaa
gacaatgcacgtttcatgaaaaaggctactaagcactatgaagcattggcaaaccgcact
gcagcaaatggtcactgcattgacatttatgcttgtgccttggatcagactggtcttttg
gaaatgaaatgttgttcaaaccttactggtggagagattgtgattggagattcctttaac
acatccctttttaaacaaacattccagagagtgtttactaaagatccaaatggatcgttt
aaaatggcatttggggcaaatctagatgtcaagacatcaagagagttgaaagtttctggt
actattggaccttgtgtctcattaaatgtgaacggtccttgtgtttctgaaaatgaactg
ggggttggaggaacaagccagtggaaaatttgtgcattggatccaactaccactctcgga
atatattttgaagttgtgaatcaacacaatgcacctattcctcagggtggacgtggggca
gtacagtttgttacccagtaccagcattcaactacacagaaacggataagggtcaccaca
gttgctagaaattgggcagatgctcaaagccagatccaacacattgaggcagcctttgat
caggaagcagcagcagtgctgatggcccggctaggagtttatagagcagagactgaggag
ggtccagatgttctcagatggttagataggcagctcatccgactgtgccagaagtttggg
cagtataataaagatgacccctcttccttcaggctctcagactccttttctctgtatcct
cagtttatgtttcatttgagacgatcgcctttcttgcaagtgttcaataacagcccagat
gagtcctcatactatcgccatcactttgccaggcaagacttgacacagtcactgatcatg
atccagccaatcctttattcttactctttctatggacctccagagcctgttctgctggac
agcagtagcattttagctgacaggattttgcttatggacaccttcttccagattgtgatc
tacctgggtgagactattgcacagtggcgtaatgcaggttaccacgacatgcctgaatat
gaaaactttaagcaacttttgcaagctccattagatgatgcccaggaaatcttacagagc
aggttcccaatgccacgctacatcaatacagaacacggaggaagtcaggcaagattcctt
ctttcgaaagtgaatccatctcagacacacaacaacctttacaactggggacaggaatct
ggggccccgatccttaccgatgacgtcagtctacaagtgttcatggatcatttgaaaaaa
ctagccgtttctactgcttcgtaa
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