Xenopus tropicalis (tropical clawed frog): 733546
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Entry
733546 CDS
T01011
Symbol
thoc1
Name
(RefSeq) THO complex subunit 1
KO
K12878
THO complex subunit 1
Organism
xtr
Xenopus tropicalis (tropical clawed frog)
Pathway
xtr03013
Nucleocytoplasmic transport
xtr03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
xtr00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
733546 (thoc1)
09122 Translation
03013 Nucleocytoplasmic transport
733546 (thoc1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
xtr03019
]
733546 (thoc1)
03041 Spliceosome [BR:
xtr03041
]
733546 (thoc1)
Messenger RNA biogenesis [BR:
xtr03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
TREX complex
733546 (thoc1)
Spliceosome [BR:
xtr03041
]
Complex C
Other components
EJC/TREX
733546 (thoc1)
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
733546 (thoc1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
efThoc1
Death
Motif
Other DBs
NCBI-GeneID:
733546
NCBI-ProteinID:
XP_002934170
Xenbase:
XB-GENE-951669
UniProt:
F6XN58
LinkDB
All DBs
Position
6:108263480..108284830
Genome browser
AA seq
671 aa
AA seq
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MASSYSDGGVPNGSNMSPLSFCLTEAKDKFTVATREAVGCKNIKPLLNIFTQLPGSENEK
KPTLDQVFRVVLEEEIINQVSCENCLAIISLAINGVTDGICTATTPFVLLGDVLDCLPLA
YCDKIFTFVEKNVGTWKSNTFYSAGKNYLLRMCNDLLRRLSKSQNTVFCGRIQLFLARLF
PLSEKSGLNLQSQFNLENVTVFNANEQESTLGQKVEEKDDGMEIEEGEMGDDDAPNSSSI
PIDYNLYRKFWTLQDFFRNPVQCYDKNSWKTFLKFSDEVLTVFKSYKLDDTQASRKKIEE
LKSGGEHVYFAKFLTSEKLMDLQLSDSNFRRHILVQYLILFQYLKGQVKFKSSNYILLDE
QSLWIEDTTKLVHQLLSETPPVGEKFSKTVEHILNTEENWNAWKNEGCPSFVKERPTETK
PQKMAKKRPLPEEFLGKGSNKKMSMGNDELTRLWNLCPDNMEACRSESREFMPSLEQFFE
EAIEQADPENMVDNEYKVVNNANYGWRALRLLARRSPHFFQPTNQQFKSLPEYLENMVIK
LAKELPPPSEEIKTVDEDEDEDNESLLKENNESPAEVQQQKLSMSEQIESFANKLGEHWK
TLAPHLDMKEMDIKVIESDTEDAKMRAKLLLLAWQEREGGHANLENLISALNSAGLNELA
ESITNDSENGS
NT seq
2016 nt
NT seq
+upstream
nt +downstream
nt
atggcgtcatcatacagcgacggcggtgttccgaacgggagcaatatgtcgccgttgtca
ttttgtttgactgaagcaaaagataaattcacggttgccaccagagaagcagtgggatgc
aagaacatcaaacccttgctgaacatatttacccagctgcctggaagtgaaaatgaaaag
aaaccgacgcttgatcaagtattcagagttgttcttgaggaggaaattataaaccaagta
tcatgtgaaaactgtctagctattatatcactggccataaatggggttacagatggtatt
tgcactgcaacgacaccatttgtgctcttgggagatgtgcttgactgtctgcctctagcg
tactgcgacaagatcttcacttttgttgagaaaaatgttggtacctggaaatctaataca
ttttactcagcggggaaaaactacctgctacggatgtgtaatgatctcttaagaagacta
tcaaaatctcagaacacagttttctgtggaaggattcaactatttcttgcacgactcttc
cctctctctgaaaaatctggcttgaacttgcagtcacagtttaatttggagaatgtcact
gtatttaatgccaatgagcaggaaagcacattgggacagaaggtggaagaaaaagatgac
gggatggagattgaagaaggggaaatgggagatgatgatgcacctaatagttcatctatc
cccatagactacaacctgtataggaagttctggacacttcaagacttcttcaggaatcct
gtgcagtgttacgacaagaactcctggaaaacctttctcaaattttcagatgaagttctt
actgtatttaaaagttataagctggatgatactcaggcatcaaggaaaaagatcgaagag
ctaaaatctggaggagaacatgtgtattttgccaaatttttgaccagtgaaaagttaatg
gatctgcagctgagtgacagcaacttccgtcgccatatattggttcagtaccttattctg
tttcagtatctaaagggacaagtcaaatttaaaagttccaattatattcttctagatgaa
cagtctctttggattgaggacaccaccaagcttgtccatcagctgctttctgaaacacct
ccagttggggaaaagttttctaaaacagtggagcatatactgaatactgaagaaaactgg
aacgcatggaaaaacgaaggctgtccaagttttgtaaaggaaagaccaacagaaacaaag
ccacagaaaatggcaaaaaaacggccattaccggaggagtttctaggaaaaggttcaaat
aagaaaatgtccatgggaaatgatgagttaactcggctttggaatctgtgccctgacaac
atggaagcatgcagatctgaaagcagggagtttatgccatctttggaacagttctttgaa
gaggccattgaacaagctgatcctgaaaatatggtggacaatgagtataaggtggtgaat
aatgccaattatggctggagggcacttagactgttggcacgccgaagcccccatttcttt
caacctaccaaccagcagtttaaaagcttaccagaatacctggagaatatggtgatcaag
ctagctaaagaattgcctccaccatcagaagaaataaaaactgttgatgaagacgaagat
gaggacaatgaatctttgttaaaggagaacaatgaaagtccagccgaagtacaacaacaa
aaactgagcatgagtgagcagattgagtcattcgctaacaaactgggcgagcactggaag
acactcgccccccatctggatatgaaggagatggacattaaagtgatagaatctgacact
gaggatgcaaaaatgagagcgaagctcctgcttctcgcttggcaagagcgagagggaggc
catgcaaacttggagaatctaataagtgcactgaatagcgccggcttaaatgaactggca
gaaagcataaccaatgactctgaaaatggttcctga
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integrated database retrieval system
