Xanthomonas vasicola pv. vasculorum: C7V42_10080
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Entry
C7V42_10080 CDS
T05388
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
xva
Xanthomonas vasicola pv. vasculorum
Pathway
xva03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
xva00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
C7V42_10080 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
xva03400
]
C7V42_10080 (ligD)
Enzymes [BR:
xva01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
C7V42_10080 (ligD)
DNA repair and recombination proteins [BR:
xva03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
C7V42_10080 (ligD)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
AVQ06905
LinkDB
All DBs
Position
2193795..2196425
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AA seq
876 aa
AA seq
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MSLSEYSRKRSFDKTREPEPGKALPQGRRAIFVVQLHHASRRHYDFRLQVGDALKSWAVP
KGPSYDPKVKRMAVEVEDHPVDYASFEGEIPKGEYGGGHVAQFDHGVWATTGDAEAQLAK
GHLRFELFGNKLKGGWHLVRSSKPARQPQWLLFKEDDAYAGRLEADDLLADFAAAPAEDV
RRAGAGKPQRKTLKTVPLPAAKKRGGWAKKALALTNARRAEMEDAAFAPQLAKLGQSPPE
GAQWLHEIKWDGYRILATVTAGKVRLWSRNALEWTDKTPEIADAIRSLGLRSAQIDGELI
AGRGTKEDFNLLQATLSGERQMPLALAVFDLLHVDGVDIREAPLRERKHLLQQVLEAASS
THLAYSSHVEGDGTEAFQVAGEQHFEGIISKRADRPYRDGRSDDWRKTKQLASQEYAVVG
YTAPKGSRSGFGSLLLATPDPVHGWLYVGRVGSGFSDALMREVTQQLEGGGDRKPTAHVP
TDDTDLRGATWFAPRFVVEVFYRGIGGQKLLRQASFKALRPDKRIADLSDSDAADGAAAT
PSAKRSPKRVAKNAKTVTTQAPKRAATRAAAAATRKSAVAAPAADAMPTLSSPTKLIYPD
IRATKRDVWDYYQAVMDHLLPQIVGRPLSIIRCPSGAEKPCFFQKHHTAGLARVSSVKLT
EETGTNAYYLVVEDAPGLLELVQFNALEFHPWGSHADRPDVADRVVFDLDPGPDVPFSEV
KRASNDIRKLLAQLELESFLRVSGGKGLHVVVPLNPGCDWEVTKRFAKGFADALAQAEPQ
RFIATATKSLRNKRIFVDYLRNGRGATAVASYSLRGRPGAPVALPLPWSDLSKLQRADAF
TLRDVPEKLRRRRKDPWADMDRIQQNLARWAEQDED
NT seq
2631 nt
NT seq
+upstream
nt +downstream
nt
atgagcctgagcgagtacagccgcaagcgcagcttcgacaagacccgtgagccagagccg
ggcaaggccctgccgcaagggcggcgcgcgatcttcgtcgtgcagttgcaccacgccagt
cgccgccactacgacttccgcctgcaggttggcgatgcactcaagagctgggcggtaccg
aaggggccaagctacgaccccaaggtcaagcgcatggcagtggaggtcgaagatcacccg
gtcgactacgcgagcttcgagggcgagattcccaagggcgaatacggcggcgggcatgtg
gcgcagtttgaccatggcgtgtgggcgaccacgggcgatgcggaagcgcagctggccaag
ggacatctgcgcttcgagttgttcggcaacaagctcaagggcggctggcatctggtgcgc
tccagcaagccggcgcggcagccgcagtggctgctattcaaggaggacgatgcctatgcg
ggcaggctggaagcagacgatctgctggccgatttcgctgccgcgcccgcggaggatgtg
cgccgcgcaggcgcgggcaagccccagcgaaaaacgctgaagacggtgccgctgccggcc
gcgaaaaagcgcggcggctgggcgaagaaggcgctggcgctgaccaatgcacggcgtgcc
gagatggaagatgccgcatttgcgccgcagctggccaagctgggccagtccccgcccgaa
ggcgcgcagtggctgcatgaaatcaaatgggacggttaccgcattctggcaacggtcacc
gcaggcaaggtgcggctgtggtcgcgcaatgcgctggagtggaccgacaagacgccggag
attgccgatgcaatccggtcgctgggcctgcgcagcgcgcagatcgatggcgaattgatt
gccggacgcggcaccaaagaagacttcaacctgctgcaggccaccctgtctggcgaacgc
caaatgccgctggcactggcggtgttcgatttgctgcacgtggacggcgtggacattcgc
gaggcgccgctgcgcgagcgcaagcacttgttgcagcaagtgcttgaggcggcgtccagc
acgcatctggcctacagctcacatgtggaaggcgatggcaccgaggcattccaggtcgcc
ggcgagcaacatttcgaaggcatcatttccaaacgtgccgatcgcccctatcgcgacggg
cgcagcgacgattggcgcaagaccaagcagctggcaagccaggaatatgcggtggtcggc
tataccgcgcccaagggcagccgcagtggctttggctcgctgttattggccacgccggac
ccggtacatggctggttgtacgtgggccgcgttgggtccggcttttccgatgccttgatg
cgcgaagtcacccagcagttggagggtggtggtgatcgtaaacccactgcgcacgttccc
accgacgacaccgacttgcgcggggccacctggtttgcgccacgcttcgtggtagaagtg
ttctaccgcggcatcggtgggcaaaagttgctgcggcaggcatcgttcaaggcgctgcgc
ccggataagcgcattgccgatctttccgacagcgatgcggcagatggcgcggctgcaacg
ccttctgccaagcgttcgccaaagcgtgttgcgaaaaatgccaagactgtgaccactcag
gcaccaaagcgtgcggcaacgcgcgccgcagcggctgccacgcgcaaatcggcagttgcc
gcacccgccgcggacgcgatgccgacgctgtccagcccgaccaagctgatctatcccgat
atccgcgcgacaaagcgcgacgtgtgggactactaccaggcggtgatggatcacctgttg
ccgcagatcgtaggccggccgctgtcgatcatccgctgcccgagcggcgcggaaaaaccg
tgttttttccagaaacaccacacggccggccttgcgcgcgtgagctcggtcaagctgacc
gaagagaccggcaccaacgcgtactaccttgttgtcgaagatgcgcccggcttgctggaa
ctggtgcaattcaatgcgctggaattccatccctggggctcgcacgccgaccgaccggat
gttgccgaccgtgtggtgttcgatctcgatcccggcccggatgtgccgttttccgaggtc
aaacgtgcatcaaacgatattcgcaagctgctggcgcagcttgagctggaatcgttcttg
cgcgtctccggcggcaagggcctgcacgtggtggtgcccttgaaccccggttgtgattgg
gaagtgaccaagcgattcgccaaagggtttgctgatgccttggcgcaggcggagccgcag
cgattcatcgccactgctaccaaaagcctgcgcaataagcgcatcttcgtcgactatctg
cgcaacggccgtggtgccaccgcagtggcgtcctactcgttgcgtggccgcccgggtgcg
ccagtcgcgctgccgctgccgtggtcggacttgtccaagctacaacgcgccgacgcgttt
accttgcgcgatgtgccggagaagctgcgccgccgtcgcaaggacccgtgggcagacatg
gaccgcatccagcagaacctggcgcgttgggcggagcaggatgaggattga
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