Xanthomonas vasicola pv. vasculorum: C7V42_14390
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Entry
C7V42_14390 CDS
T05388
Name
(GenBank) ATP-dependent RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
xva
Xanthomonas vasicola pv. vasculorum
Pathway
xva03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
xva00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
C7V42_14390
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
xva03019
]
C7V42_14390
03009 Ribosome biogenesis [BR:
xva03009
]
C7V42_14390
Enzymes [BR:
xva01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
C7V42_14390
Messenger RNA biogenesis [BR:
xva03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
C7V42_14390
Ribosome biogenesis [BR:
xva03009
]
Prokaryotic type
rRNA helicases
C7V42_14390
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
AAA_19
adh_short
P-loop_SecA
Flavi_DEAD
Motif
Other DBs
NCBI-ProteinID:
AVQ07619
LinkDB
All DBs
Position
complement(3136638..3138560)
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AA seq
640 aa
AA seq
DB search
MTQESSAPLLFADLGLSGAVMKAVTNVGYESPSPIQAATIPALLSGRDVLGQAQTGTGKT
AAFALPVLSNADLNQLKPQALVLAPTRELAIQVAEAFQKYAEAIPGFRVLPVYGGQPYAQ
QLSALKRGVHVVVGTPGRVIDHLDRGTLDLSQLKTLVLDEADEMLRMGFIDDVEAVLKKL
PEKRQVALFSATMPPAIRRIAQTYLKDPAEVTIAAKTTTSANIRQRYWWVSGLHKLDALT
RILEVEPFDGMIIFARTKAGTEELAQKLQARGLAAAAINGDMQQAAREKTIAQLKDGKLD
ILVATDVAARGLDVERVSHVLNYDIPYDTESYVHRIGRTGRAGRNGDAILFVTPREKGML
RSIERATRQPIEEMQLPSVDAVNDTRVARFMTRITESLAGGQIDMYRDLLQRYETENNVP
AIDIAAAMAKLLQGDSPFLLTPPVRGAREEFAPRERNERADRGDRNDRGERPRFEPKFER
GPRADGERAGRPPRGDDAGGERPRRDPVAPRGEPEFGMESYRIEVGHTHGVKPANIVGAI
ANEAGLESRYIGRIDIQDDYSILDLPADMPRELLTHLKKVWVSGQQLNMRKLEEGEAAAS
PSKPRFPRGGKPSGRPNGPGRPMDRAGAPHRKGPPKPRGE
NT seq
1923 nt
NT seq
+upstream
nt +downstream
nt
atgacccaagaatcttccgcgccgctgctgtttgcagacctcggcctctcaggcgctgtg
atgaaggccgttaccaatgttggctacgagtcgccgtcgccgatccaggctgccaccatc
cccgcgctgctatccggccgcgacgtgctcggccaggcccagacgggcaccggcaagacc
gccgcgttcgcgctgccggtgctgtccaacgccgatctcaaccagctcaagccgcaggca
ctggtgctggccccgacccgcgaactcgccatccaggtcgccgaggccttccagaaatat
gccgaagccattccgggcttccgcgtgttgccggtctacggcggccagccgtatgcccag
cagttgagcgcgctcaagcgcggcgtgcatgtggtggtgggcacccccggccgcgtgatc
gatcacctggaccgcggcacgctggatctgtcccagctcaagacgctggtgctggacgaa
gccgacgaaatgctgcgcatgggcttcatcgacgacgtcgaagcggtgctgaagaagttg
ccggagaagcgccaggtggcgttgttctcggccaccatgccgccggcgattcgccgtatc
gcgcagacctatttgaaagatcctgccgaagtcaccattgcggccaagaccaccacctcg
gccaacatccgccagcgctactggtgggtaagcgggctgcacaagctggatgcgctgacc
cgcatcctcgaggtcgaaccgttcgacggcatgatcatcttcgcgcgcaccaaggccggt
accgaagaactggcgcagaagctgcaggcacgcggtctggctgcggccgccatcaatggc
gatatgcagcaggcggcacgtgagaagactattgcccagctcaaggacggcaagctggac
atcctggtcgccaccgacgtggccgcacgcggtctggacgtggagcgcgtcagccatgtg
ctgaactacgacattccgtatgacaccgaaagctacgtgcaccgcatcggccgtaccggc
cgtgccggccgcaacggcgacgcgatcctgttcgtgacgccgcgcgaaaagggcatgctg
cgttcgatcgaacgcgccacccgccagccgatcgaagagatgcagctgccgagcgtggat
gcggttaacgacacccgcgtggcacgcttcatgacccgcatcaccgagagcctggccggc
ggccagatcgacatgtaccgcgatctgctgcagcgctacgagaccgaaaacaacgtgccg
gcgatcgatatcgccgctgccatggccaagctgctgcagggcgactcgccgttcctgctg
accccgccggtgcgtggtgcgcgcgaagagttcgccccgcgcgagcgcaacgagcgtgcc
gaccgcggtgatcgcaatgaccgtggcgagcgcccgcggttcgagcccaagttcgagcgt
ggcccgcgtgccgacggtgagcgcgctgggcgtccgccgcgtggcgacgatgccggtggc
gagcgtccgcgtcgcgacccggtcgccccgcgcggcgagccggaattcggcatggagagc
taccgcatcgaagtgggtcatacccatggcgtgaagccggccaatatcgtcggcgcgatc
gccaacgaagccgggctggaaagccgctatattggccggatcgacatccaggacgattat
tcgatcctggatctgccggccgacatgccgcgcgaactgctcacccacctgaagaaagtc
tgggtgtccggtcagcagctcaacatgcgcaagctggaagagggcgaggcggccgcgtcg
ccgtccaagccacgcttcccgcgtggcggcaagccttccggtcgtccgaacggcccgggc
cgtccgatggaccgcgctggcgcaccgcaccgcaagggcccgccgaagccgcgcggcgag
taa
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