Xanthomonas vesicatoria: BJD12_03125
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Entry
BJD12_03125 CDS
T04741
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
xve
Xanthomonas vesicatoria
Pathway
xve03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
xve00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
BJD12_03125
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
xve03400
]
BJD12_03125
Enzymes [BR:
xve01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
BJD12_03125
DNA repair and recombination proteins [BR:
xve03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
BJD12_03125
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
DNA_primase_S
RNA_ligase
mRNA_cap_enzyme
Motif
Other DBs
NCBI-ProteinID:
APP74418
UniProt:
F0BA57
LinkDB
All DBs
Position
complement(707095..709671)
Genome browser
AA seq
858 aa
AA seq
DB search
MSLSEYRRKRSCDKTREPEPGKTVPAGQRAIFVVQLHHASRRHYDFRLQVGDALKSWAVP
KGPSYDPKVKRMAVEVEEHPVDYASFEGEIPKGEYGGGHVAQFDHGVWATAGDPEAQLAK
GHLRFELFGDKLKGGWHLVRSGKPARQPQWLLFKEDDAYASTLEADDLLADVAAAPAEDV
RRAGAGKAQRKALTHVPAPRAGKRRHWAKQALALTNACAAEMDDAPFAPQLAKLGQAPPD
GGQWVHEIKWDGYRILATISDGVVRLWSRNALEWTDKAPEIRNAILSLGLRSAQLDGELI
AGRGTKEDFNLLQATLSGERQVPLALAVFDLLHIDGVDISEAPLVERKQLLQQVLAATPN
AHLAYSSHVEGDGSEAFRVAGQQHFEGIISKRADRPYRGGRSDDWRKTKQLASQEYAVVG
YTAPKGSRSGFGSLLLATPDATHGWLYVGRVGSGFSDALMREVTQQLDGGGRKPTAYIPT
EDTDLRGATWFAPRFVVEVFYRGVGGQHLLRQASFKSLRPDKRIADLGDTDASGGATAVE
QAAAKPRLSRRNSAQTASARPLASTSMAAPLPALSSPAKLIYSDIRATKGDVWEYYQAVM
DHVLPEIVGRPLSIIRCPNGAEKPCFFQKHHTAGLERVSSVKLKEETGSNAYYLVVDDAP
GLLELVQFNALEFHPWGSHAARPDIADRVVFDLDPGPDVPFAEVKRAATDIRKLLAQLEL
ESFLRVSGGKGLHVVVPLNPGCDWELTKRFAKGFADALAQSEPERFVATATKRFRNKRIF
VDYLRNGRGATAVASYSLRGRPGAPVALPLPWSDLPKLHRADAFSLRDVPEKLRRRRKDP
WAEIDRLQQNLARWATQD
NT seq
2577 nt
NT seq
+upstream
nt +downstream
nt
atgagcctgagcgagtaccgacgcaagcgtagctgcgacaagacccgcgagcccgagcct
ggcaagaccgtgcccgccggacagcgagcgatcttcgtggtgcagttgcaccatgccagc
aggcgccactacgacttccgcctgcaggtaggtgacgcgctcaagagctgggcggtaccg
aaagggccgagctacgaccccaaggtcaaacggatggcggtggaggtggaggagcacccg
gtcgactacgccagcttcgaaggcgaaatccccaagggcgagtatggcggcgggcatgtg
gcccagttcgatcatggcgtgtgggcgactgcaggcgacccggaagcgcagttggccaag
ggtcatctgcgctttgaactgtttggcgacaagctcaagggtggctggcatctggtgcgc
tccggaaagccggcacggcagccgcagtggctgctcttcaaagaagacgatgcctatgcg
agcaccttggaggccgacgatctgcttgccgatgtcgccgcagcgccggcggaagacgtc
cgtcgtgcgggtgccggcaaggcccagcgcaaggcgcttacgcacgtgccagcgccgcgc
gccggcaagcgcaggcactgggcaaagcaggcgcttgcattgaccaatgcgtgcgctgcg
gagatggacgatgcgccattcgcgccgcagctcgccaagctgggccaggcgccgccggat
ggcgggcaatgggtgcacgagatcaagtgggacggctaccggatactggcgacgatcagc
gacggcgtagtgcggctgtggtcgcgtaacgcgctggagtggacggacaaggccccggag
attcgtaatgcaatcctgtcgctgggcctgcgctcggcacaactcgatggcgaattgatc
gccggccgcggcaccaaggaagatttcaatttgctgcaggccaccttgtccggcgagcgt
caggtgccgctggcgctcgcggtgttcgatcttctgcatatcgatggcgtggatatcagc
gaggccccgttagtcgaacgtaagcagctcttgcagcaggtgctggctgcgacgccgaac
gcgcatcttgcctacagctcgcatgtggagggcgatgggtcagaggcgttccgggtggca
ggccagcagcacttcgaaggcatcatttccaagcgtgcggaccggccgtatcgcggcggc
cgcagcgacgattggcgcaagaccaaacagctggcgagccaggaatatgcggtggtgggc
tacaccgcgcccaagggcagccgcagcggattcggctcgctattgctggcgacacctgac
gcaacgcacggatggctgtacgtaggcagggtgggctccggtttttccgatgcgttgatg
cgcgaggtgacgcagcagctggacggtggcggacgcaaacccaccgcctacatccccact
gaagacaccgatctccgcggcgcgacctggtttgcgccgcgctttgtggtagaggtgttc
taccgtggcgttggcgggcaacacttgttgcgccaagcctcgttcaagagcttgcggccg
gacaagcgcatcgccgatctgggcgacaccgatgcgtcgggtggcgcaaccgctgtggag
caggcggctgcgaaaccgcgtctgtccagacgcaacagcgcacagactgcttctgccagg
ccgctggcatcaacctcgatggcagcgccgttaccagcactctccagcccagccaaactg
atctactccgacatccgcgccaccaagggcgatgtctgggagtactaccaagcagtgatg
gaccatgtgctgccggaaattgtcggtcgcccgttgtcgatcatccgttgcccgaatggg
gcggaaaaaccctgcttctttcagaaacaccacacagccgggctggaacgggtcagctcg
gtcaagctgaaggaagagaccggcagcaacgcctactatctggtggtcgacgatgcgccc
gggctgctggagctggtgcaattcaatgcgctggaattccatccctggggttcgcacgcg
gcgcgcccggatattgccgaccgagtggtattcgatctggatccaggtccggatgtgccg
tttgccgaggtcaaacgtgccgccaccgatatccgcaagctgcttgcgcagcttgagcta
gagtcgttcctgcgcgtgtccgggggcaagggcctccacgtggtggtgccgttgaacccg
ggctgcgattgggagctgaccaagcgctttgccaagggctttgccgacgcgctggcgcag
tccgagccggagcgtttcgtcgccacggccaccaagcgttttcgcaacaaacgcattttt
gtcgattacctgcgcaacggacgcggcgccacggcggtggcctcgtattcgttgcggggc
aggccgggcgcaccggtcgcgttgccgctgccgtggtcggatttacccaagctgcaccgc
gccgatgccttcagcttgcgggatgtgccggagaaattgcgccgtcggcgcaaggacccg
tgggcagagatcgatcgtctccagcagaacctggcacgttgggcaacgcaggattga
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