Xylanimonas protaetiae: ET471_17040
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Entry
ET471_17040 CDS
T05815
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
xya
Xylanimonas protaetiae
Pathway
xya03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
xya00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
ET471_17040
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
xya03400
]
ET471_17040
Enzymes [BR:
xya01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
ET471_17040
DNA repair and recombination proteins [BR:
xya03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
ET471_17040
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
RNA_ligase
HemN_C
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
QAY71524
UniProt:
A0A4P6F767
LinkDB
All DBs
Position
3668660..3671161
Genome browser
AA seq
833 aa
AA seq
DB search
MAAPQTVTIDGHRLQLTNLDKVLYPATGTTKGEVLDYYARVAPVLLPHVRRRPATRKRWP
DGVEGQVFFQKNADRSTPSWVRTHRIQHKTSSNDYVLVDDVATLTWLAQTATLELHVPQW
QVGRTGVHLPPDRLVLDLDPGEGAGLAECAEVARLARAILRGMGLEPLPVTSGSKGIHLY
AALSAGSDPAGARPSSADEVSAVAHELARYLEAEHPDLVVSDMKKALRGGKVLVDWSQNN
GAKTTIAPYSLRGRPHPTVAAPRTWEELDDPGLRHLTFEEVLDRVAADGDLLAGLTQGHL
SQLEPTPAHLARFERLATYHAKRDPARTPEPFDAGDSPPGQTFVIQEHHARRLHWDFRLE
HEGVLVSWALPKGEPTDPAQNHLAVQTEDHPLAYGAFEGTIPGGEYGAGEVTIWDAGTYE
LEKWRDGKEVIVTLRSERRGARRLALIRTGRDEGDNQWLIHRTKTQPGAAEGDSPAARRQ
TVRPGARSDDELPGGPAGNPDVVVRLEPMLASAAEPADVRALQADPGGGDREWVFEMKWD
GYRTIAVAAPGPDGVPVARFTSRTGQDLTRTYPELAPLAGQVRGDLPVVLDAEIVALDAS
GRPDFRRLQQHTSKAELMVFDVLQVGDRSLLHAPYDERRALLGDVLDPERPVHVPAVFDG
DLDAALAFSRRLRLEGVMAKRRESTYLPGRRSRQWLKLKHTAAQEVVVVGWRPLHAGEPR
EDARYAGALLLAVPADDGALRYVGRVGTGFTDADRRALAERLTAVGRATPPLDGVPRPDA
ARARWVTPRIVGEVEFAEWTGDPATDPDARLRAARWRGLRPDKDPDDVVVERP
NT seq
2502 nt
NT seq
+upstream
nt +downstream
nt
gtggccgccccccagaccgtgacgatcgacgggcaccgcctccagctgaccaacctggac
aaggtgctctacccggccacgggcaccaccaagggcgaggtgctcgactactacgcgcgc
gtcgcgcccgtgctgctcccccacgtccgccgccggcccgcgacgcgcaagcggtggccc
gacggcgtcgagggccaggtgttcttccagaagaacgccgaccggtccacgccgtcatgg
gtgcgcacgcaccgcatccagcacaagacgtcgtcgaacgactacgtgctggtcgacgac
gtcgccacgctcacgtggctggcccagacggcgaccctcgagctgcacgtgccgcagtgg
caggtgggccgcacgggggtgcacctgccgccggaccggctggtgctcgacctcgacccc
ggcgagggcgccgggctggccgagtgcgcggaggtcgcacggctcgcgcgggcgatcctg
cggggcatgggcctcgaaccgctgccggtcacgtccgggtcgaagggcatccacctctac
gccgcgctgtcggcgggctccgacccggcgggtgcgcggccgtcgtcggccgacgaggtc
tccgccgtcgcgcacgagctggcccggtacctggaggccgagcaccccgacctggtggtc
agcgacatgaagaaggcgctgcgcggcggcaaggtgctggtcgactggtcgcagaacaac
ggggcgaagacgacgatcgcgccctactcgctgcgcgggcgcccgcaccccaccgtggcg
gcgccgcgcacgtgggaggagctcgacgaccccgggctgcggcacctcaccttcgaggag
gtgctcgaccgggtcgccgcggacggggacctgctcgccgggctgacgcaggggcacctg
tcccagctcgagcccacccccgcccacctggcccgcttcgagcggctcgcgacctaccac
gcgaagcgcgacccggcccggacccccgagcccttcgacgccggcgactccccgccgggc
cagacgttcgtcatccaggagcaccacgcccgccgcctgcactgggacttccgcctggag
cacgagggcgtgctcgtcagctgggcgctgcccaagggcgagcccaccgaccccgcccag
aaccacctggccgtgcagaccgaggaccacccgctcgcgtacggcgccttcgagggcacc
atcccgggcggcgagtacggcgccggcgaggtgacgatctgggacgccggcacgtacgag
ctcgagaagtggcgggacggcaaggaggtcatcgtcacgctccgcagcgagcgccgcggc
gcgcgacgcctcgcgctgatccgcacgggtcgcgacgagggcgacaaccagtggctgatc
caccgcacgaagacccagccgggcgcggcggagggtgacagtccggcagctcgtcgtcag
accgtgcgcccgggggcacggtctgacgacgaactgccgggcggacccgcgggcaaccct
gacgtcgtcgtccggctcgagcccatgctcgcctccgccgccgagccggcggacgtccgc
gccctccaggccgaccccgggggcggcgaccgggagtgggtgttcgagatgaagtgggac
ggctaccggaccatcgccgtggccgcgcccggccccgacggcgtcccggtcgcgcggttc
acgtcccgcaccggccaggacctcacacgcacctacccggagctcgcgccgctcgccggg
caggtccggggcgacctgcccgtcgtcctggacgccgagatcgtcgcgctcgacgcgagc
gggcgccccgacttccggcggctccagcagcacacgtcgaaggccgagctcatggtcttc
gacgtcctccaggtgggcgaccggtcgctcctgcacgccccgtacgacgagcgccgcgcg
ctgctcggcgacgtcctcgacccggaacggccggtccacgtccccgccgtgttcgacggc
gacctcgacgccgcgctcgcgttctcccgcaggctgcggctcgagggagtcatggccaag
cggcgcgagtccacctacctgccgggacgccggtcgcggcagtggctcaagctcaagcac
acggccgcgcaggaggtggtcgtcgtcggctggcggccgctgcacgcgggcgagccgcgc
gaggacgcccggtacgccggcgcgctcctgctcgccgtccccgccgacgacggtgcgctg
cgctacgtcggccgcgtcggcacgggtttcaccgacgccgaccgccgggccctcgcggag
cgcctcacggcggtggggcgcgcgacgccgccgctcgacggcgtcccccgccccgacgcc
gcccgcgcccgctgggtcaccccgcgcatcgtcggcgaggtcgagttcgccgagtggacg
ggcgaccccgccaccgaccccgacgcccgcctccgcgcggcgcggtggcgcgggctgcgc
ccggacaaggacccggacgacgtcgtcgtcgaacggccctga
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