Xylophilus sp. GOD-11R: R9X41_04155
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Entry
R9X41_04155 CDS
T09600
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
xyg
Xylophilus sp. GOD-11R
Pathway
xyg03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
xyg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
R9X41_04155 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
xyg03400
]
R9X41_04155 (ligD)
Enzymes [BR:
xyg01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
R9X41_04155 (ligD)
DNA repair and recombination proteins [BR:
xyg03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
R9X41_04155 (ligD)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
DNA_primase_S
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
WPB57848
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Position
885818..888430
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AA seq
870 aa
AA seq
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MPPFDPQDFGSAAETGSLSMARDRTRAADTLERYRAKRDFSATPEPRGQRASDGDERIFV
VQEHHASHLHYDFRLELDGTLKSWAVPKGPSLDPHVKRMAVQVEDHPLSYAGFEGTIPEK
HYGAGTVIVWDAGTWQIDGDASAAYTKGRLKFSLAGQKLRGHWNLVRMKPREGERSPSWL
LIKEDDAEARPEQDFDLLKERPGSVLGGAKARSAKTSATAKTKIKTKTKAKAKPVALPET
LAPQLATLADALPPDRDAWAFEAKLDGYRLLVRSEAGTIRLFTRNGHDWTSKMRPLADAL
ARLSLPDAWIDGEVVAAGPKGTPDFQALQRAFDGQDTAHLVYYAFDLPYCDRADLRASPL
DERRERLAGLIGTATTGMVRFCQTLQGDPAELLQQACAFGFEGLIGKRRDGRYVSRRSPG
WIKLKCGRRQEFVIGGFTDPRGSRSGLGALLLGYYDDGALRFAGSVGTGFDQATLDDLRG
RLDAIATDRSAFADGTGVPRGAHFVEPRLVAEIAFGEWTRDGHLRHPVFHGLRVDKPART
IGREQAQEPMQTSRKTAAPSKSKAARTSATAANPLEGLRVTHGERVIDDKSGITKMDLLR
YYASAAPLMLPHLADRPLAMLRSPEGVGGEAFFQKHAEARDIAGMRRLDPAFDPGHGALL
VADDALALLSAVQMNAIEFHTWNAVVGQRAKPAKIALPDRLTFDLDPGDGVGWPQMREAA
QLLHGFLDELGLVSFLKTSGGKGLHVVLPLKPKADWDTVKGFGQKVAQHMAAVIPARFVA
KSGPRNRVGKIYIDYLRNGYGATTVSAWSVRARPGLGVSVPVGWDELPTVNGGDHWTVKT
VEERLDIGNTPWDGYEAVAQSLDNAIGRLD
NT seq
2613 nt
NT seq
+upstream
nt +downstream
nt
atgccgccgttcgatccgcaggacttcggcagcgccgccgaaaccgggagcctgagcatg
gcgcgtgaccgaacgcgagccgccgacacgctggaacgctaccgcgccaagcgcgacttc
agcgccacgccggagccgcgcggacaacgggcgagcgacggcgacgaacgcatcttcgtc
gtgcaggagcaccacgccagccatctgcattacgacttccggctcgagctcgacggcacg
ctcaagagttgggcggtgcccaaggggccgagccttgatccgcacgtcaagcgcatggcg
gtgcaggttgaggaccatccgctgtcgtatgcgggcttcgaaggcacgattcccgaaaag
cactatggcgccggcacggtgatcgtctgggacgccggcacctggcaaatcgatggtgat
gccagcgctgcctacaccaaagggcggctcaaattttcgctggccggccagaagctgcgc
ggccactggaacctggtgcggatgaagccgcgcgagggcgagcgcagcccgtcgtggctg
ctgatcaaggaagacgatgccgaggcccggccggaacaggatttcgatctgctgaaggag
cggcccggcagcgtgctgggcggcgcgaaggccaggtccgcgaaaacgagcgctacggca
aaaacaaagataaagaccaagaccaaggccaaggccaagccggtcgccctgcccgaaacc
ctcgcgccccaactcgccaccctggccgacgccctgccgccggatcgcgacgcctgggcc
ttcgaagccaagctcgacggctaccgcttgctggtgcgtagcgaggccggcacgatccgg
ctgttcacccgcaacggccatgactggacttcgaagatgcgtccactcgccgacgccctg
gcccgactgagcctgccggacgcgtggatcgacggcgaggtcgtcgccgccggccccaaa
ggcacgcccgacttccaggccctgcagcgcgccttcgacggccaggacaccgcacacctc
gtctactacgccttcgacctgccgtactgcgaccgcgccgacctgcgcgcatcgccgctg
gacgaacgccgcgagcgcctggccgggttgatcggcaccgccaccaccggcatggtccgt
ttctgccagaccctgcagggcgacccggccgagctgctgcagcaggcctgcgcattcggt
ttcgagggcctgatcggcaagcggcgcgacggccgctacgtctcgcgccgctcgcctggc
tggatcaagctcaagtgcggtcgacggcaggagttcgtcatcggcggcttcaccgatccg
cgcggcagccgcagcggtctgggggcgctgctgttggggtattacgacgacggcgccctg
cgcttcgccggcagcgtcggcactggattcgatcaggccacgctcgacgacctgcgcggc
cgtctcgatgccatcgcgacggaccgcagcgccttcgccgacggtaccggcgtgccgcgc
ggcgcgcacttcgtcgagccccggctcgtcgccgaaatcgccttcggtgagtggacacgc
gacggccatctgcgccacccggtgttccacggactgcgagtcgacaaaccggcccggacg
atcgggcgcgaacaggcgcaggaaccgatgcagacatcccgcaagaccgccgccccttcc
aagtccaaggccgccaggaccagcgccacggccgccaacccgctcgagggcctgcgcgtc
acccacggcgaacgggtgatcgacgacaagagcggcatcaccaagatggacctgctgcgc
tactacgcgagtgccgcgccactgatgctgccgcacttggccgaccgtccgctggccatg
ctgcgatcacccgagggcgtcggcggcgaggccttcttccagaagcacgccgaggcccgc
gatatcgccggcatgcgtcgcctggaccccgccttcgaccccggccacggcgcgctgctg
gtggcagacgacgcactggcgctgctgtcggcggtgcagatgaatgcgatcgagttccac
acctggaacgccgtcgtcggccaacgcgcgaaaccggccaaaatcgcgctgcccgatcgc
ctcaccttcgacctcgacccgggcgacggcgtcggctggccgcagatgcgcgaggcagcg
caactgctgcacggcttcctggacgagctcggcctggtctcgttcctcaaaacctccggc
ggcaaaggcctgcacgtggtgctgccgctgaagcccaaggcggattgggacacggtgaag
gggttcggccagaaagtcgcgcaacacatggcggcggtgattccggcgcgcttcgttgcc
aagagcggtccgcgcaaccgcgtcggcaagatctacatcgactacctgcgcaacggctac
ggcgcgacgacggtatcggcctggtcggtgcgcgcccggccggggctgggcgtgtcggtt
ccggttggctgggacgaactgccgacggtcaacggcggcgatcactggacggtgaagacg
gtggaggagcggctggacatcggcaacacgccgtgggacggctacgaggcagtagcgcag
tcgctcgacaacgccatcggccggctcgactga
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