KEGG   Xylophilus sp. GOD-11R: R9X41_04155
Entry
R9X41_04155       CDS       T09600                                 
Symbol
ligD
Name
(GenBank) DNA ligase D
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
xyg  Xylophilus sp. GOD-11R
Pathway
xyg03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:xyg00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    R9X41_04155 (ligD)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:xyg03400]
    R9X41_04155 (ligD)
Enzymes [BR:xyg01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     R9X41_04155 (ligD)
DNA repair and recombination proteins [BR:xyg03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     R9X41_04155 (ligD)
SSDB
Motif
Pfam: LigD_Prim-Pol LigD_N DNA_ligase_A_C DNA_ligase_A_M DNA_primase_S RNA_ligase
Other DBs
NCBI-ProteinID: WPB57848
LinkDB
Position
885818..888430
AA seq 870 aa
MPPFDPQDFGSAAETGSLSMARDRTRAADTLERYRAKRDFSATPEPRGQRASDGDERIFV
VQEHHASHLHYDFRLELDGTLKSWAVPKGPSLDPHVKRMAVQVEDHPLSYAGFEGTIPEK
HYGAGTVIVWDAGTWQIDGDASAAYTKGRLKFSLAGQKLRGHWNLVRMKPREGERSPSWL
LIKEDDAEARPEQDFDLLKERPGSVLGGAKARSAKTSATAKTKIKTKTKAKAKPVALPET
LAPQLATLADALPPDRDAWAFEAKLDGYRLLVRSEAGTIRLFTRNGHDWTSKMRPLADAL
ARLSLPDAWIDGEVVAAGPKGTPDFQALQRAFDGQDTAHLVYYAFDLPYCDRADLRASPL
DERRERLAGLIGTATTGMVRFCQTLQGDPAELLQQACAFGFEGLIGKRRDGRYVSRRSPG
WIKLKCGRRQEFVIGGFTDPRGSRSGLGALLLGYYDDGALRFAGSVGTGFDQATLDDLRG
RLDAIATDRSAFADGTGVPRGAHFVEPRLVAEIAFGEWTRDGHLRHPVFHGLRVDKPART
IGREQAQEPMQTSRKTAAPSKSKAARTSATAANPLEGLRVTHGERVIDDKSGITKMDLLR
YYASAAPLMLPHLADRPLAMLRSPEGVGGEAFFQKHAEARDIAGMRRLDPAFDPGHGALL
VADDALALLSAVQMNAIEFHTWNAVVGQRAKPAKIALPDRLTFDLDPGDGVGWPQMREAA
QLLHGFLDELGLVSFLKTSGGKGLHVVLPLKPKADWDTVKGFGQKVAQHMAAVIPARFVA
KSGPRNRVGKIYIDYLRNGYGATTVSAWSVRARPGLGVSVPVGWDELPTVNGGDHWTVKT
VEERLDIGNTPWDGYEAVAQSLDNAIGRLD
NT seq 2613 nt   +upstreamnt  +downstreamnt
atgccgccgttcgatccgcaggacttcggcagcgccgccgaaaccgggagcctgagcatg
gcgcgtgaccgaacgcgagccgccgacacgctggaacgctaccgcgccaagcgcgacttc
agcgccacgccggagccgcgcggacaacgggcgagcgacggcgacgaacgcatcttcgtc
gtgcaggagcaccacgccagccatctgcattacgacttccggctcgagctcgacggcacg
ctcaagagttgggcggtgcccaaggggccgagccttgatccgcacgtcaagcgcatggcg
gtgcaggttgaggaccatccgctgtcgtatgcgggcttcgaaggcacgattcccgaaaag
cactatggcgccggcacggtgatcgtctgggacgccggcacctggcaaatcgatggtgat
gccagcgctgcctacaccaaagggcggctcaaattttcgctggccggccagaagctgcgc
ggccactggaacctggtgcggatgaagccgcgcgagggcgagcgcagcccgtcgtggctg
ctgatcaaggaagacgatgccgaggcccggccggaacaggatttcgatctgctgaaggag
cggcccggcagcgtgctgggcggcgcgaaggccaggtccgcgaaaacgagcgctacggca
aaaacaaagataaagaccaagaccaaggccaaggccaagccggtcgccctgcccgaaacc
ctcgcgccccaactcgccaccctggccgacgccctgccgccggatcgcgacgcctgggcc
ttcgaagccaagctcgacggctaccgcttgctggtgcgtagcgaggccggcacgatccgg
ctgttcacccgcaacggccatgactggacttcgaagatgcgtccactcgccgacgccctg
gcccgactgagcctgccggacgcgtggatcgacggcgaggtcgtcgccgccggccccaaa
ggcacgcccgacttccaggccctgcagcgcgccttcgacggccaggacaccgcacacctc
gtctactacgccttcgacctgccgtactgcgaccgcgccgacctgcgcgcatcgccgctg
gacgaacgccgcgagcgcctggccgggttgatcggcaccgccaccaccggcatggtccgt
ttctgccagaccctgcagggcgacccggccgagctgctgcagcaggcctgcgcattcggt
ttcgagggcctgatcggcaagcggcgcgacggccgctacgtctcgcgccgctcgcctggc
tggatcaagctcaagtgcggtcgacggcaggagttcgtcatcggcggcttcaccgatccg
cgcggcagccgcagcggtctgggggcgctgctgttggggtattacgacgacggcgccctg
cgcttcgccggcagcgtcggcactggattcgatcaggccacgctcgacgacctgcgcggc
cgtctcgatgccatcgcgacggaccgcagcgccttcgccgacggtaccggcgtgccgcgc
ggcgcgcacttcgtcgagccccggctcgtcgccgaaatcgccttcggtgagtggacacgc
gacggccatctgcgccacccggtgttccacggactgcgagtcgacaaaccggcccggacg
atcgggcgcgaacaggcgcaggaaccgatgcagacatcccgcaagaccgccgccccttcc
aagtccaaggccgccaggaccagcgccacggccgccaacccgctcgagggcctgcgcgtc
acccacggcgaacgggtgatcgacgacaagagcggcatcaccaagatggacctgctgcgc
tactacgcgagtgccgcgccactgatgctgccgcacttggccgaccgtccgctggccatg
ctgcgatcacccgagggcgtcggcggcgaggccttcttccagaagcacgccgaggcccgc
gatatcgccggcatgcgtcgcctggaccccgccttcgaccccggccacggcgcgctgctg
gtggcagacgacgcactggcgctgctgtcggcggtgcagatgaatgcgatcgagttccac
acctggaacgccgtcgtcggccaacgcgcgaaaccggccaaaatcgcgctgcccgatcgc
ctcaccttcgacctcgacccgggcgacggcgtcggctggccgcagatgcgcgaggcagcg
caactgctgcacggcttcctggacgagctcggcctggtctcgttcctcaaaacctccggc
ggcaaaggcctgcacgtggtgctgccgctgaagcccaaggcggattgggacacggtgaag
gggttcggccagaaagtcgcgcaacacatggcggcggtgattccggcgcgcttcgttgcc
aagagcggtccgcgcaaccgcgtcggcaagatctacatcgactacctgcgcaacggctac
ggcgcgacgacggtatcggcctggtcggtgcgcgcccggccggggctgggcgtgtcggtt
ccggttggctgggacgaactgccgacggtcaacggcggcgatcactggacggtgaagacg
gtggaggagcggctggacatcggcaacacgccgtgggacggctacgaggcagtagcgcag
tcgctcgacaacgccatcggccggctcgactga

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