Xylophilus sp. GOD-11R: R9X41_06665
Help
Entry
R9X41_06665 CDS
T09600
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
xyg
Xylophilus sp. GOD-11R
Pathway
xyg03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
xyg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
R9X41_06665 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
xyg03400
]
R9X41_06665 (ligD)
Enzymes [BR:
xyg01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
R9X41_06665 (ligD)
DNA repair and recombination proteins [BR:
xyg03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
R9X41_06665 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
Exo_endo_phos
DNA_ligase_A_M
DNA_ligase_A_C
DNA_primase_S
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
WPB58320
LinkDB
All DBs
Position
1450275..1453649
Genome browser
AA seq
1124 aa
AA seq
DB search
MRVATWNINNVNKRIDLLVDWLHRFQPDVLALQELKAPTAQFPLQAIEAAGYRALVVGQK
AWNGVALLSRGHEPLPVVTALSGDAADKEARYLEAAINGVLYACLYLPNGNPWPGPKFEY
KLAWFERMQRRARQLWDSGSPVVLLGDWNVVPTDADIYKPDTWRDNALLQPQARQAFTDI
LAQGWTDALAAAHPDAPLFTFWDYRRKRWERNAGLRIDHILTSAGWKVLDAGVDRQERGK
EGSSDHAPVWAELSAPGKAARRRKAATVPAATAAKAGNPPLETPVPLARYNAKRDFKKTA
EPAGVLPEKPGDALIFVVQKHWASRLHYDFRLELDGVMLSWAVPKGPSFDPATKSMAIQV
EDHPISYNEFEGNIPKGEYGGGTVIVWDRGTWEPVGDPREGMRVGKVLFKLHGQKLAGLW
ELVRISKPGEKKQDQWMLFKKKGDAWARPIAQYNVITALPDSVVDKPLGLVEAREPREPG
ARPSKDARPDSADAMRLARAADFPSTLAPQLATLVSSVPDGHWVIETKFDGYRLLARIRN
GAVRLFTRNGNDWTDKLQALAAAIAAMGIEQAWLDGEIVVLDDAGLPDFNALQNAMDGAK
ARDIVMFVFDVPFFGEMDLRAVPLASRRALLRDLFEERESELVRFSQSFEVQPAQLLGAA
CRMGLEGVMVKRADAPYSSGRTDSWMKLKCQHRQEFVVVGFTDRSGGAKEVGGLLLGYHE
AGELRYAGSVGTGWGSATGQDLHRKLSGLQIDKPALNPAELQPGRWTKRKAGTERWVEPT
VVVEIAFTEWTPDKHVRHPVFRGIRTDKPAALVVREQPQAMPASKTAPPTKPKASTVKVS
NPERVIDASTGLRKIDLVHYYESIAEFMLPHLKNRPTSLVRAPSGIAGQLFFQKHLEHRM
PGVRELDAELWPGHTALLAVESVEALASAAQMNVVEFHTWNATASRIDRPDRFILDLDPG
EGVTWPMLQEAAQLTRVMLTELGLESWLKTSGGKGLHVVVPITPKMQYDDVKAFSQAVVQ
HMARVIPSKFVAVMGGANRVGKIFIDYLRNGHGQTTACAFSARSRPGLGVSMPVSWEQLG
ALKSGSQWTIATAREYLSFQKEDPWAGYWKKKQTLAQGLRLLKR
NT seq
3375 nt
NT seq
+upstream
nt +downstream
nt
gtgcgcgtcgctacctggaacatcaacaacgtcaacaagcggatcgatctgctggtcgac
tggctccaccgctttcagcccgacgttctcgcgctgcaagagctgaaggcgcccaccgcg
cagtttccgctgcaggcaatcgaagcggcgggctaccgtgcgctggtcgtgggtcagaag
gcgtggaacggggtcgcgctgctcagccgagggcacgagccgctgcccgtcgtcaccgcg
ctttccggcgacgcggcggacaaggaggcgcgctatctggaggccgccatcaacggcgtg
ctgtatgcgtgcctctacctgcccaatggcaatccgtggcccggacccaagttcgaatac
aagctggcctggttcgagcgaatgcagcggcgagctcggcaactgtgggattccggcagc
ccggtggtcctgctgggtgactggaacgtcgttcccaccgatgccgacatctacaagccc
gacacgtggcgcgacaacgcgctgctgcagccgcaagcgcgccaggcctttaccgacatc
ctggcgcagggctggaccgatgcactggccgcggcgcatcccgatgcaccgctcttcacc
ttctgggactaccggcgcaagcgatgggaacgcaatgccggcttgcgcatcgatcacatc
ctgaccagcgccggctggaaggtgctcgacgccggtgtcgaccggcaggagcgcggcaag
gaaggatcgagcgaccatgcaccggtctgggccgagctgtcagcgcccggtaaagccgcc
agacgcaggaaggccgcgacggtgccggccgccacggcggcgaaggcaggcaacccgccg
ctggaaacgcccgtaccgctggcgcggtacaacgccaagcgggatttcaaaaaaacggct
gagcccgccggcgtcttgcccgaaaaacccggcgacgccctgatcttcgtcgtccagaag
cactgggcctctcgcctgcactacgactttcgtctcgaactcgacggcgtgatgctgtcc
tgggcggtgcccaagggaccgtccttcgacccggccacgaagtcgatggccattcaggtg
gaagaccatcccatctcctacaacgagttcgagggaaacattcccaagggcgaatatggg
ggcggcaccgtcatcgtctgggaccgtgggacctgggagcctgtcggtgacccccgggag
ggcatgcgcgtcggaaaagtgcttttcaaactgcatgggcagaagctcgcgggcctctgg
gagctggtccgcatctccaaacccggcgagaagaagcaggaccagtggatgctcttcaag
aagaagggcgacgcctgggccagaccgatcgcgcaatacaacgtcatcaccgcgctgccg
gacagcgtcgtcgacaagccgctcggcctggtggaggcacgcgaaccgcgcgaaccaggc
gcacgcccttcgaaagacgcccggcccgacagcgccgatgcgatgaggctggcccgggcg
gccgacttcccgagcacgctcgcaccacaactcgccaccctggtgtcgtccgtgccggac
gggcattgggtgatcgagaccaagttcgacggataccggcttctggcacgcatccgaaat
ggcgccgtgcgcctgttcacccgcaacggtaacgactggaccgacaagctccaggcgctg
gccgctgccatcgccgcgatgggcatcgagcaagcatggctggacggcgaaatcgtggtg
ctcgacgacgccggcctgcccgacttcaacgcgctgcagaacgccatggatggcgcgaag
gcgcgggacatcgtgatgttcgttttcgatgtgccgttcttcggtgagatggacctgcgt
gcggtccccctggccagccgccgcgccctcctgcgggacctgttcgaggagcgcgaaagc
gagctcgtgcggttcagccagtcgttcgaagtccagcccgcacagctgctgggcgcggct
tgcaggatggggctcgagggtgtcatggtcaagcgcgcggatgcgccctacagctccggc
cggaccgactcctggatgaagttgaaatgccagcaccggcaggagttcgtggtggttggc
ttcaccgaccgatcgggcggggcgaaggaggtgggcgggcttctcctcggctaccacgag
gctggcgaacttcgctacgcggggtcggtgggcactggctggggttccgcgaccggacag
gacctccatcgcaagctgtccgggctgcagatcgacaagcccgcgctgaaccccgccgag
ctccagcccgggcgatggacgaaacgcaaggccggcacggagcgctgggtcgagccaacg
gtcgtggtggagatcgcattcacggaatggactcccgacaagcatgtgcgccacccggtg
ttccgtgggatacggacggacaagccggcggcgctcgtcgtgcgggaacagccccaggcc
atgcccgcgtcgaaaacggcgccgccaacaaaacccaaagccagcacggtcaaggtttcc
aatcccgagcgggtcatcgatgcctccaccggcctgcgaaaaatcgacctggtgcattac
tacgagagcatcgcggagttcatgctcccgcacctgaagaaccggccgacttcgctggtg
cgggcaccttcgggcatcgcgggccagctcttctttcagaagcacctcgaacaccgaatg
ccgggcgtgcgcgagctggacgccgagctctggcccggccacacggccctgctcgccgtg
gaatccgtggaggcactcgcttccgcagcccagatgaacgtggtcgagttccatacctgg
aacgcgacggcatcccgtatcgaccgacccgaccgcttcattctcgacctcgacccgggc
gaaggcgtgacctggccgatgctgcaggaggcggctcagctcacccgggtgatgctgacc
gaactggggctggagagctggctcaagaccagcggtggcaagggcctgcacgtcgttgtg
ccgatcacgccgaagatgcagtacgacgacgtcaaggccttctcgcaagccgtggttcag
cacatggccagggtcatcccgtccaaattcgtggcggtgatgggcggcgcgaaccgcgtg
ggaaaaattttcatcgactacctgcgcaacgggcacggccagacgacggcatgcgcgttt
tccgcgcgctccaggcccgggctcggcgtgtccatgccggtcagctgggagcagctcggt
gcgctcaaaagcgggtcccagtggaccatcgccaccgcgcgcgaatacctgagctttcag
aaagaagacccatgggccgggtattggaagaagaagcaaaccttggcgcaaggactgcga
ctcttgaagcgatag
DBGET
integrated database retrieval system
