Xylophilus sp. GOD-11R: R9X41_08120
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Entry
R9X41_08120 CDS
T09600
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
xyg
Xylophilus sp. GOD-11R
Pathway
xyg03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
xyg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
R9X41_08120 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
xyg03400
]
R9X41_08120 (mfd)
Enzymes [BR:
xyg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
R9X41_08120 (mfd)
DNA repair and recombination proteins [BR:
xyg03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
R9X41_08120 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
MFD_D3
ResIII
UB2H
ERCC3_RAD25_C
IstB_IS21
Glyco_tran_WecG
Motif
Other DBs
NCBI-ProteinID:
WPB58588
LinkDB
All DBs
Position
complement(1754469..1757933)
Genome browser
AA seq
1154 aa
AA seq
DB search
MDLPRLVPGKRFTLPRPPGSADALLLGRLGLREAAAGRRTAIVTSDANDAQRLLDEIAFF
APGLRCALFPDWETLPYDTFSPHQDLISDRLAALWRISQGDADVVLVPATTALYRVAPPS
FLAGYTFHFKTKQKLDEARLRAQLTLAGYSNVSQVVSPGEYAVRGGLIDLYPMGSPVPYR
VDLFDDEIDSIRTFDPDSQRSLYPVPEVRLLPGREFPMDDDARARFRSRWREMLDGDPTR
SRIYKDMGAGVATAGIEYYLPLFFDETATVFDYLGADATVVLHGDVEPAFQRFWQDTRDR
YRLVHGDADRPVLPPESLFLSADQFYVRANAHAQLALRAADSSQGNERFAPLTEISVVRG
AEDPLARFKTHARNTQNRVLILAESDGRRESLLDFLRASDVQPPAFDSLQAFEAAADERL
GIATAPLAAGFSWIDEGIDFVTETELFAAGVTTRRRRRQEQVSDVEALIKDLSELNVGDP
VVHVQHGIGRYLGLINMDLGQGDSEFLHLEYADKAALYVPVSQLHQISRYTGVSADEAPL
HKLGSAQWDKAKRKAAEQVRDSAAELLNIYARRALRQGHAFRFSAADYEIFSNDFGFDET
ADQRAAIHAVVQDMISPQPMDRLVCGDVGFGKTEVALRAAFIAVTGGKQVAFLAPTTLLA
EQHFQTLVDRFAKWPVKVAEMSRFRSAKEITAAAKGLEDGSVDIVVGTHKLLSESVKFQN
LGLLIIDEEHRFGVRHKEQMKALRSEVDVLTLTATPIPRTLGMALEGLRDLSVIATAPQR
RLAIKTFVRSESNGVIREAVLRELKRGGQVYFLHNEVETIQNRRQKLEEILPEARIAVAH
GQMPERELEKVMRDFVAQRYNLLLCSTIIETGIDVPSANTIVMSRADKFGLAQLHQLRGR
VGRSHHQAYAYLMVPDIEGLTKHAQQRLDAIQQMEELGSGFYLAMHDLEIRGTGEVLGEN
QSGNMMEIGFQLYNEMLSEAVRSLKAGKEPDLLAPLSAATEINLHAPALLPNDYCGDVHL
RLSFYKKLATARTADQIDRLLEEIVDRFGKLPTQAQTLVDVHRLRVLAKPYGVVKVDAAP
GVTNITFKPNPPVDPMRIIELIQKNRNVKLVGNEKLRIERELPEPKDRAQMVRDILRSLG
QPRADAAETASATA
NT seq
3465 nt
NT seq
+upstream
nt +downstream
nt
atggatctgccacgcctcgttcccggaaaacgcttcaccctgcctcgcccgccaggatcg
gccgacgcgctgctgctgggccgactcgggttgcgcgaggccgctgccgggcgacgcacc
gccatcgtcacctccgatgccaacgacgcccagcgtctgctggacgaaatcgccttcttc
gcacccggcctgcgttgcgcattgtttcccgattgggaaacgctgccctacgacaccttc
tcgccgcaccaggacctgatcagcgaccggctggcagcgctctggcgcatttcgcaaggc
gacgccgacgtggtgctggtgccggccaccacggcgctctaccgggtggcgccgccctcc
ttcctggcgggctacacctttcatttcaagacgaagcagaagctcgacgaggcccggctt
cgcgcgcagttgacacttgccggctacagcaacgtctcgcaggtggtgagccccggcgaa
tacgcggtgcgcggtggcctgatcgatctctaccccatgggctcgccggtgccctaccgg
gtcgacctgttcgacgacgagatcgactcgatccgcaccttcgaccccgacagccagcgc
agcctctatccggtgcccgaagtgcggctgctgcccggccgcgagttcccgatggacgac
gacgcccgggcgcgctttcgcagccgctggcgcgagatgctcgacggcgaccccacccgc
agccgcatctacaaggacatgggcgcgggtgtggccaccgccggcatcgagtactacctg
ccgctgttcttcgacgagaccgccaccgtcttcgactacctcggtgccgacgccaccgtg
gtgctgcacggcgacgtcgagcccgccttccagcgcttctggcaggacacacgcgaccgc
taccgtctggtgcacggtgacgccgaccgcccggtgctgccgcccgaatcgctgttcctg
tcggccgaccagttctacgtgcgggccaacgcccatgcgcagctcgccctgcgtgccgcc
gattcgagccaaggcaacgagcgcttcgcccccctcaccgagatctcggtggtgcgcggc
gccgaagacccgctggcccgcttcaagacccacgcccgcaacacccagaaccgcgtgctg
atactggccgagagcgacggccggcgcgagagcctgctcgacttcctgcgcgccagcgac
gtgcagccgccggccttcgacagcctgcaggctttcgaagccgccgccgacgagcgcctg
ggcatcgccaccgcgccgctggccgccggtttctcgtggatcgacgaaggcatcgacttc
gtcaccgaaaccgagctcttcgccgccggcgtcaccacccgcaggcgccgccgccaggag
caggtgagcgatgtcgaggcgctgatcaaggacctgtccgagctcaacgtcggcgacccg
gtggtgcacgtgcagcacggcatcggccgttacctcggcctgatcaacatggacctgggc
cagggcgacagcgaatttctgcacctggaatacgccgacaaggccgcgctctacgtgccg
gtgtcgcagctgcaccagatcagccgctacaccggcgtgtcggccgacgaggcaccgctg
cacaagctcggcagcgcccagtgggacaaggccaagcgcaaggccgccgaacaggtgcgc
gactcggccgccgagctgctcaacatctacgcccgccgcgcgctgcgccagggccacgcg
tttcgcttctcggcggccgactacgagatcttttccaacgatttcggctttgacgaaacc
gccgaccagcgcgccgccatccatgcggtggtgcaggacatgatctcgccccagcccatg
gaccgcctggtctgcggcgacgtcggcttcggcaagaccgaggtcgcgctgcgggccgcc
ttcatcgcggtcaccggcggcaagcaggtggctttcctggcgccgaccacgctgctggcc
gaacagcattttcagacgctcgtcgaccgcttcgccaagtggccggtgaaagtcgccgag
atgagccgcttccgctccgccaaggaaatcaccgccgccgccaagggcctggaagacggc
agcgtcgacatcgtcgtgggcacgcacaagctgctcagcgagtcggtcaagttccagaac
cttggcctgctcatcatcgacgaggagcaccgcttcggcgtgcgccacaaggagcagatg
aaggccttgcgctccgaggtcgacgtgctcaccctcaccgccacccccatcccgcgcacc
ctgggcatggcgctcgaaggcctgcgcgacctgagcgtgatcgccaccgcgccgcagcgc
cgcctggccatcaagaccttcgtgcgcagcgagagcaacggcgtgatccgcgaggcggtg
ttgcgcgagctcaagcgcggcggccaggtctacttcctgcacaacgaagtcgagaccatt
cagaaccgccggcagaagctcgaagagatcctgcccgaggcgcgcatcgcggtcgcccac
ggccagatgcccgagcgcgagctggagaaggtcatgcgcgacttcgtcgcccagcgctac
aacctgctgctgtgctcgaccatcatcgagaccggcatcgacgtgccgtctgccaacacc
atcgtgatgagccgcgccgacaagttcggcctggcgcagctgcaccagctgcgcggacgc
gtcggccgcagccaccaccaggcctatgcctacctgatggttcccgacatcgagggcctc
accaagcacgcccagcagcggctcgatgccatccagcagatggaagagctcggctccggc
ttctacctggcgatgcacgacctggaaatccgcggcaccggcgaggtgctgggcgagaac
cagagcggcaacatgatggagatcggcttccagctctacaacgagatgctgtccgaggcg
gtgcggtcgctcaaagccggcaaggaacccgacctgctggcgccgctgtcggccgccacc
gagatcaacctccacgcgcctgccctgctgcccaacgactactgcggcgacgtgcacctg
cgcctgtccttctacaagaagctcgccaccgcccgcaccgccgaccagatcgaccggctg
ctcgaggagatcgtcgaccgcttcggcaagctgccgacgcaggcccagacgctggtggac
gtgcaccggctgcgggtgctggccaagccctacggcgtggtcaaggtcgatgccgcaccg
ggcgtcaccaacatcaccttcaagcccaatccaccggtggatccgatgcgcatcatcgag
ctgatccagaagaaccggaacgtgaagctggtcggcaacgaaaagctgcgcatcgagcgc
gagctgcccgagcccaaggaccgcgcccagatggtgcgcgacattctgcgcagcctgggc
cagccccgcgccgacgcggccgaaacagccagcgccactgcctga
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