Xylophilus rhododendri: GT347_20925
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Entry
GT347_20925 CDS
T06383
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
xyk
Xylophilus rhododendri
Pathway
xyk03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
xyk00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
GT347_20925 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
xyk03400
]
GT347_20925 (ligD)
Enzymes [BR:
xyk01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
GT347_20925 (ligD)
DNA repair and recombination proteins [BR:
xyk03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
GT347_20925 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
QHJ00226
UniProt:
A0A857JC04
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All DBs
Position
4520645..4523152
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AA seq
835 aa
AA seq
DB search
MAAPDKLDRYKAKRNFAITSEPAEGGDEGSEALSFVVQKHWASSLHYDFRLELGGVMLSW
AVPKGPSYDTADKRMAVHVEDHPISYSSFEGEIPAKQYGAGKVIIWDKGTWHPIGDPEQG
YRDGNLKFELHGHKLLGKWALIRIKNRQSSKQEAWLLIKEKDGYMKPAAEFSVVDEYPDS
VASLPAPTSAAASPKPAPAAAEAPKAELPAKLSPQLATLVEGPPRDPENWVYEIKFDGYR
LLARVDGKSIQLFTRNGNDWTKKLASLHATLKKMKLLRGWYDGEIVVLNDKGVPDFGALQ
NAFDAESTADIVFFVFDAPYLDGRDLRGLPLDSRREQLQQVLAERPSEQVRFSDVFDAPP
QSIVASACQIGLEGVIAKRRDSVYRSSRSADWIKLKCSHRQEFVIAGWTDPKGSRSGIGA
LVLGVHDEDGKLVYAGNVGTGFNSRSLEEIRARLDEVPATKSPFAAKVAMVGKPHWVEPV
LVAEVTFGEWTSSGHIRHSVFHGLRTDKPASEIVREKAASAPKKTKAKAQPVARPAEASH
ALSTRLRVTNPERVIDTSTGITKVELVRYYALVGELMMEHLHDRPVSLVRAPAGVGGQLF
FQKHAETEKLPGIRQLDPALYASHPPMLEVESPQGLLSAAQWNVVEFHTLNTVASSFEFP
DRLVFDLDPGEGVAWSEVKKGAELMHVFLEQLGLPGFLKTSGGKGLHVVVPIKRQHDWDS
AKGFAQAVVQHMAQTLPQLFVAKSGPKNRVGKIFIDYLRNGLGATTACAWSARARPGLGI
SVPVGWDELGKLKGGDHWTIRSAQTRLDKGNEPWAGYAKATKALTKAMKLIGYQA
NT seq
2508 nt
NT seq
+upstream
nt +downstream
nt
atggctgcgccggacaaactcgaccgctacaaggccaaacgcaacttcgccatcaccagc
gagccggccgagggcggcgacgaggggagcgaggcgctgagcttcgtcgtgcagaagcac
tgggccagcagcctgcactacgacttccgcctggagctcggcggcgtgatgctgagctgg
gccgtgcccaagggcccgagctacgacacggccgacaaacgcatggcggtgcatgtggag
gaccaccccatctcgtattcctccttcgagggcgagataccggcgaagcagtacggtgcg
ggcaaggtcatcatctgggacaagggcacctggcatcccatcggcgacccggagcagggc
tatcgcgacggcaacctcaagttcgaactgcacggccacaagctgctgggcaaatgggcg
ctgatccgcatcaagaaccggcagtccagcaagcaggaagcctggctgctgatcaaggag
aaggacggctacatgaagccggcggccgagttcagcgtggtggacgagtacccggacagc
gtggccagcctgcccgcgccgacgagcgccgccgccagccccaagcctgcgccggcagca
gctgaagcgcccaaggccgagctgcccgccaaactctcgccccagctcgccaccctggtg
gaaggcccgccgcgcgatccggagaactgggtctacgagatcaagttcgacggctaccgc
ctgctggcccgggtggatggcaagtccatccagctcttcacccgcaacggcaacgactgg
acaaagaagctcgcctccctgcacgccacgctcaagaagatgaagctgctgcgcggctgg
tatgacggggagatcgtggtgctcaacgacaagggcgtgcccgacttcggcgcgctgcag
aacgccttcgacgcggaatcgaccgcggacatcgtcttcttcgtcttcgacgccccctac
ctcgacggccgcgacctgcgtggcctgccgctggatagccggcgcgagcagctgcagcag
gtgctggcggagcggccatcggagcaggtgcgtttcagcgatgtgttcgacgccccgcct
cagagcatcgtcgcctcggcctgccagatcgggctggagggcgtgatcgccaagcgccgc
gactcggtctaccgctcctcgcgttcggccgactggatcaaactcaaatgcagccaccgg
caggagttcgtgatcgccggctggaccgatcccaagggctcgcgcagcggcatcggcgcg
ctggtgctgggagtgcatgacgaggacggcaagctggtctatgcgggtaatgtcggcacc
ggcttcaacagccgttcgctcgaagagatccgcgcgcggctcgatgaggtgccggccacc
aagtcgcccttcgcggccaaggtcgcgatggtcggcaagccgcactgggtggagccggtg
ctggtcgcggaggtgaccttcggcgagtggacctccagcggccatatccggcattcggtc
ttccacggcctgaggacggacaagccggccagcgagatcgtgcgcgagaaggcggccagc
gcgcccaagaaaaccaaggccaaggcccaacccgtggcgcggccggccgaggcatcccat
gcgctgtccacccgcctgcgggtgaccaaccccgagcgggtgatagacaccagcaccggc
atcaccaaggtggagctggtgcgctactacgccctggtcggcgaactgatgatggagcac
ctgcacgaccggccggtctcgctggtgcgggcgccggcgggtgtcggcggccagctcttc
ttccagaagcatgccgagaccgagaagctgcccggcatccgccagctcgatccggcgctc
tacgccagccatccgccgatgctggaggtggagagcccgcagggcctgctgtcggccgcg
cagtggaacgtggtggagttccacaccctcaacaccgtggcgagcagcttcgagtttccc
gaccggctggtgttcgacctggacccgggcgagggcgtggcctggtccgaggtgaagaag
ggcgcggagctgatgcatgtgttcctggagcagctcggcctgccgggctttctgaagacc
agcggcggaaagggcctgcatgtcgtcgtgccgatcaagcgccagcacgactgggacagc
gccaagggcttcgcgcaggcggtggtgcagcacatggcccagaccctgccgcagctcttc
gtggccaagagcgggccgaagaaccgggtcggcaagatcttcatcgactacctgcgcaac
ggcctgggcgcgaccaccgcctgcgcctggtcggcgcgggcacggccggggctgggcatc
tcggtgccggtgggctgggacgagctgggcaaactcaagggcggcgaccactggaccatc
cgcagcgcgcagacacggctggacaagggcaacgaaccctgggccggttatgccaaggcg
accaaggcgctgaccaaggcgatgaagctgatcggctaccaggcctag
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