KEGG   Xylophilus rhododendri: GT347_20925
Entry
GT347_20925       CDS       T06383                                 
Symbol
ligD
Name
(GenBank) DNA ligase D
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
xyk  Xylophilus rhododendri
Pathway
xyk03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:xyk00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    GT347_20925 (ligD)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:xyk03400]
    GT347_20925 (ligD)
Enzymes [BR:xyk01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     GT347_20925 (ligD)
DNA repair and recombination proteins [BR:xyk03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     GT347_20925 (ligD)
SSDB
Motif
Pfam: LigD_Prim-Pol LigD_N DNA_ligase_A_C DNA_ligase_A_M DNA_primase_S
Other DBs
NCBI-ProteinID: QHJ00226
UniProt: A0A857JC04
LinkDB
Position
4520645..4523152
AA seq 835 aa
MAAPDKLDRYKAKRNFAITSEPAEGGDEGSEALSFVVQKHWASSLHYDFRLELGGVMLSW
AVPKGPSYDTADKRMAVHVEDHPISYSSFEGEIPAKQYGAGKVIIWDKGTWHPIGDPEQG
YRDGNLKFELHGHKLLGKWALIRIKNRQSSKQEAWLLIKEKDGYMKPAAEFSVVDEYPDS
VASLPAPTSAAASPKPAPAAAEAPKAELPAKLSPQLATLVEGPPRDPENWVYEIKFDGYR
LLARVDGKSIQLFTRNGNDWTKKLASLHATLKKMKLLRGWYDGEIVVLNDKGVPDFGALQ
NAFDAESTADIVFFVFDAPYLDGRDLRGLPLDSRREQLQQVLAERPSEQVRFSDVFDAPP
QSIVASACQIGLEGVIAKRRDSVYRSSRSADWIKLKCSHRQEFVIAGWTDPKGSRSGIGA
LVLGVHDEDGKLVYAGNVGTGFNSRSLEEIRARLDEVPATKSPFAAKVAMVGKPHWVEPV
LVAEVTFGEWTSSGHIRHSVFHGLRTDKPASEIVREKAASAPKKTKAKAQPVARPAEASH
ALSTRLRVTNPERVIDTSTGITKVELVRYYALVGELMMEHLHDRPVSLVRAPAGVGGQLF
FQKHAETEKLPGIRQLDPALYASHPPMLEVESPQGLLSAAQWNVVEFHTLNTVASSFEFP
DRLVFDLDPGEGVAWSEVKKGAELMHVFLEQLGLPGFLKTSGGKGLHVVVPIKRQHDWDS
AKGFAQAVVQHMAQTLPQLFVAKSGPKNRVGKIFIDYLRNGLGATTACAWSARARPGLGI
SVPVGWDELGKLKGGDHWTIRSAQTRLDKGNEPWAGYAKATKALTKAMKLIGYQA
NT seq 2508 nt   +upstreamnt  +downstreamnt
atggctgcgccggacaaactcgaccgctacaaggccaaacgcaacttcgccatcaccagc
gagccggccgagggcggcgacgaggggagcgaggcgctgagcttcgtcgtgcagaagcac
tgggccagcagcctgcactacgacttccgcctggagctcggcggcgtgatgctgagctgg
gccgtgcccaagggcccgagctacgacacggccgacaaacgcatggcggtgcatgtggag
gaccaccccatctcgtattcctccttcgagggcgagataccggcgaagcagtacggtgcg
ggcaaggtcatcatctgggacaagggcacctggcatcccatcggcgacccggagcagggc
tatcgcgacggcaacctcaagttcgaactgcacggccacaagctgctgggcaaatgggcg
ctgatccgcatcaagaaccggcagtccagcaagcaggaagcctggctgctgatcaaggag
aaggacggctacatgaagccggcggccgagttcagcgtggtggacgagtacccggacagc
gtggccagcctgcccgcgccgacgagcgccgccgccagccccaagcctgcgccggcagca
gctgaagcgcccaaggccgagctgcccgccaaactctcgccccagctcgccaccctggtg
gaaggcccgccgcgcgatccggagaactgggtctacgagatcaagttcgacggctaccgc
ctgctggcccgggtggatggcaagtccatccagctcttcacccgcaacggcaacgactgg
acaaagaagctcgcctccctgcacgccacgctcaagaagatgaagctgctgcgcggctgg
tatgacggggagatcgtggtgctcaacgacaagggcgtgcccgacttcggcgcgctgcag
aacgccttcgacgcggaatcgaccgcggacatcgtcttcttcgtcttcgacgccccctac
ctcgacggccgcgacctgcgtggcctgccgctggatagccggcgcgagcagctgcagcag
gtgctggcggagcggccatcggagcaggtgcgtttcagcgatgtgttcgacgccccgcct
cagagcatcgtcgcctcggcctgccagatcgggctggagggcgtgatcgccaagcgccgc
gactcggtctaccgctcctcgcgttcggccgactggatcaaactcaaatgcagccaccgg
caggagttcgtgatcgccggctggaccgatcccaagggctcgcgcagcggcatcggcgcg
ctggtgctgggagtgcatgacgaggacggcaagctggtctatgcgggtaatgtcggcacc
ggcttcaacagccgttcgctcgaagagatccgcgcgcggctcgatgaggtgccggccacc
aagtcgcccttcgcggccaaggtcgcgatggtcggcaagccgcactgggtggagccggtg
ctggtcgcggaggtgaccttcggcgagtggacctccagcggccatatccggcattcggtc
ttccacggcctgaggacggacaagccggccagcgagatcgtgcgcgagaaggcggccagc
gcgcccaagaaaaccaaggccaaggcccaacccgtggcgcggccggccgaggcatcccat
gcgctgtccacccgcctgcgggtgaccaaccccgagcgggtgatagacaccagcaccggc
atcaccaaggtggagctggtgcgctactacgccctggtcggcgaactgatgatggagcac
ctgcacgaccggccggtctcgctggtgcgggcgccggcgggtgtcggcggccagctcttc
ttccagaagcatgccgagaccgagaagctgcccggcatccgccagctcgatccggcgctc
tacgccagccatccgccgatgctggaggtggagagcccgcagggcctgctgtcggccgcg
cagtggaacgtggtggagttccacaccctcaacaccgtggcgagcagcttcgagtttccc
gaccggctggtgttcgacctggacccgggcgagggcgtggcctggtccgaggtgaagaag
ggcgcggagctgatgcatgtgttcctggagcagctcggcctgccgggctttctgaagacc
agcggcggaaagggcctgcatgtcgtcgtgccgatcaagcgccagcacgactgggacagc
gccaagggcttcgcgcaggcggtggtgcagcacatggcccagaccctgccgcagctcttc
gtggccaagagcgggccgaagaaccgggtcggcaagatcttcatcgactacctgcgcaac
ggcctgggcgcgaccaccgcctgcgcctggtcggcgcgggcacggccggggctgggcatc
tcggtgccggtgggctgggacgagctgggcaaactcaagggcggcgaccactggaccatc
cgcagcgcgcagacacggctggacaagggcaacgaaccctgggccggttatgccaaggcg
accaaggcgctgaccaaggcgatgaagctgatcggctaccaggcctag

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