Xylanimonas allomyrinae: ET495_00125
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Entry
ET495_00125 CDS
T05814
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
xyl
Xylanimonas allomyrinae
Pathway
xyl03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
xyl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
ET495_00125 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
xyl03400
]
ET495_00125 (mfd)
Enzymes [BR:
xyl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
ET495_00125 (mfd)
DNA repair and recombination proteins [BR:
xyl03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
ET495_00125 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
TRCF
Helicase_C
CarD_TRCF_RID
ResIII
RecG_dom3_C
AAA_22
AroM
Motif
Other DBs
NCBI-ProteinID:
QAY61970
UniProt:
A0A4P6EHH0
LinkDB
All DBs
Position
28712..32350
Genome browser
AA seq
1212 aa
AA seq
DB search
MNLTGLVPAVLADPGAAAALEDVRARGRVDVVGPQGVRAPLLVAASRRRPLVVVTATGRQ
ADELASSVRAYLPDEESDDVAVLPSWETLPHERLSPRADTVARRIAVFRRLAHPAAARGP
AGPIRVLVMPVRALLQPVVAGLGELEPVTLHDGDSADLTTIAERLVAAAYMRVDMVERRG
EFAVRGGILDVFPPTEDHPLRVEFWGDEVSEIRWFSVADQRSLEIAQQGLWAPPCREILL
TDAVRARAAALVERMPGAVEMLDKLAAGVAVEGMESLGPVLVDDMVPVLDLVPDDALLVL
DEPERVRRRAHDLVATTEEFLAAAWTGAVAGGAAPIDLSSASFSTLADAREVAARRGLGW
WTLSAFGLDPQASEASEPLTHPGAPHAGVPEESASVPEGTHVVAARDVEAYRGDLDRALA
DVRRMQGEGWRLVLTTEGHGPAKRMTEQLMAADCPARLVPVLDELPEPGVVLVLPALVGK
GFVAPDLRLAVFAESDLTGRQGTGTRDMRKLPSRRRNVVDPLQLRAGDYVVHEQHGVGRF
VEMVQRTLGAGANAATREYLVLEYASSKRGQPGDRLFVPMDQLDQVTKYVGGEAPSLSKM
GGADWKNTKSRARKHVREIAGELIRLYSARMATQGHAFGPDTPWQRELEDAFAYVETPDQ
LSTIDEVKADMEKPTPMDRLVCGDVGYGKTEIAIRAAFKAVQDGKQVAVLVPTTLLVQQH
FETFSERYQGFPVKVAALSRFQSARESEATLQGLKDGTVDVVIGTHRLITGQVHFKDLGL
VIIDEEQRFGVEHKETLKQLRTNVDVLAMSATPIPRTLEMAVTGIREMSTLQTPPEERHP
VLTYVGAYEERQIAAAVRRELLREGQVFYVHNRVESIERTAQRLRELVPEARVGVAHGKM
GENQLDQVIRGFWEKELDVLVCTTIVETGLDISNANTLVLERADVLGLSQLHQLRGRVGR
GRERAYAYFLYPPERPLTEQAHDRLATMAAHTDLGAGMQIAMKDLEIRGAGNLLGGEQSG
HIAGVGFDLYVRMVGEAVHAFRGDAPEEQPEVTIELPVDAHLPESYIATERLRLEAYKKI
AAATDAPLLAEVRAELVDRYGALPDVASALFDVADFRNHARRAGLTDVTAQGKHVRFAPV
DLPESAQLRLKRLYPGTVLKPAIRAFLVPFPTTARIGGQPLRGAEVLAWARQLVDAVVLG
EVSAAASVGTAR
NT seq
3639 nt
NT seq
+upstream
nt +downstream
nt
gtgaacctcaccggcctcgtccccgccgtcctcgccgaccccggggcggccgccgccctg
gaggacgtccgtgcgcgcggacgcgtcgacgtcgtcgggccgcagggcgtgcgggcgccg
ctgctggtcgcggcgtcccggcgccggccgctcgtcgtcgtgaccgcgacgggccgccag
gccgacgagctcgcctcgtcggtgcgcgcctacctgcccgacgaggagtcggacgacgtc
gcggtgctgccgtcgtgggagacgctgccgcacgagcggctcagcccgcgcgccgacacc
gtcgcccggcgcatcgcggtgttccggcgcctggcccacccggccgctgcgcgcgggcct
gccgggccgatccgcgtgctggtcatgcccgtgcgcgcgctgctgcagcccgtggtcgcg
gggctgggcgagctcgagcccgtcacgctgcacgacggcgacagcgccgacctgacgacg
atcgccgaacggctggtggcggccgcgtacatgcgcgtcgacatggttgagcggcgcggc
gagttcgcggtgcgcggcggcatcctcgacgtcttcccgcccaccgaggaccaccccctg
cgggtcgagttctggggtgacgaggtcagcgagatccgctggttctcggtggccgaccag
cggtcgctcgagatcgcgcagcaggggctgtgggcgccgccgtgccgcgagatcctgctg
accgacgccgtccgggcgcgcgccgccgcgctggtggagcggatgccgggggcggtcgag
atgctcgacaagctcgcggcgggcgtcgcggtcgagggcatggagtcgctcggcccggtg
ctggtcgacgacatggtgccggtgctggacctggtgcccgacgacgcgctcctggtgctc
gacgagcccgagcgcgtgcgccgccgggcgcacgacctcgtggcgaccaccgaggagttc
ctcgctgcggcctggacgggggccgtggcgggcggcgcggccccgatcgacctgtcgtcg
gccagcttctcgaccctcgccgacgcgcgcgaggtggccgcgcgccgcggcctgggctgg
tggacgctgtcggcgttcggcctggacccgcaggcctcggaggcgtccgaaccactgacg
caccccggcgccccgcacgccggcgtcccagaggaatccgcgagcgttccggaggggacg
cacgtcgtcgcggcgcgcgacgtcgaggcctaccgcggcgacctcgaccgcgccctcgcc
gacgtgcgccgcatgcagggcgaggggtggcggctcgtgctgaccaccgagggccacggt
cccgccaagcgcatgaccgagcagctcatggccgccgactgcccggcgcgcctcgtgccc
gtgctcgacgagctgcccgagcccggcgtcgtcctcgtgctgcccgcgctcgtgggcaag
ggcttcgtcgcgcccgacctgcggctcgccgtcttcgccgagtccgacctcacgggccgt
cagggcaccggcacgcgcgacatgcgcaagctgcccagccgccgccgcaacgtcgtcgac
ccgcttcagctgcgcgccggcgactacgtggtgcacgagcagcacggcgtcggccggttc
gtggagatggtgcagcgcacgctcggcgcgggcgcgaacgccgcgacgcgcgagtacctc
gtgctggagtacgcgagcagcaagcgcgggcagcccggggaccggctgttcgtgccgatg
gaccagctcgaccaggtcaccaagtacgtgggcggcgaggcgccgagcctgtccaagatg
ggcggcgccgactggaagaacaccaagtcgcgggcccgcaagcacgtgcgtgagatcgcg
ggggagctcatccggctctacagcgcccgcatggccacgcaggggcacgcgttcggcccc
gacacgccctggcagcgcgagctggaggacgcgttcgcgtacgtcgagacgcccgaccag
ctctccaccatcgacgaggtcaaggccgacatggagaagccgacgccgatggaccgcctg
gtgtgcggcgacgtcggctacggcaagacggagatcgccatccgcgccgcgttcaaggcg
gtgcaggacggcaagcaggtcgccgtcctggtcccgacgacgctgctggtgcagcagcac
ttcgagacgttctccgagcggtaccaggggttcccggtcaaggtcgcggcgctgtcgcgg
ttccagagcgcccgcgagtcggaggcgaccctccagggcctcaaggacggcacggtcgac
gtcgtcatcggcacgcaccggctcatcacgggccaggtgcacttcaaggacctcgggctg
gtcatcatcgacgaggagcagcggttcggcgtcgagcacaaggagacgctcaagcagctg
cgcaccaacgtggacgtgctggccatgtccgcgactcccatcccgcgcacgctcgagatg
gcggtgaccggcatccgcgagatgtcgaccctccagacgccgcccgaggagcgccacccg
gtgctgacctacgtcggcgcctacgaggagcggcagatcgccgccgccgtgcgccgcgag
ctgctgcgcgagggccaggtgttctacgtgcacaaccgggtcgagtccatcgagcgcacc
gcgcagcgcctgcgcgagctcgtgcccgaggcccgggtgggcgtcgcgcacggcaagatg
ggtgagaaccagctcgaccaggtcatccgcgggttctgggagaaggagctcgacgtcctg
gtgtgcaccaccatcgtcgagacgggcctcgacatctccaacgccaacaccctcgtcctc
gaacgcgccgacgtgctgggcctgtcgcagctccaccagctgcgcgggcgcgtggggcgt
gggcgcgagcgcgcctacgcctacttcctctacccgcccgagcggccgctgaccgagcag
gcgcacgaccgcctggccacgatggccgcgcacaccgacctcggtgcgggcatgcagatc
gccatgaaggacctcgagatccgcggcgccggcaacctgctgggcggcgagcagtcgggg
cacatcgccggggtcgggttcgacctgtacgtgcgcatggtgggggaggccgtccacgcg
ttccgcggcgacgcccccgaggagcagcccgaggtcaccatcgagcttccggtcgacgcg
cacctgcccgagtcgtacatcgcgaccgagcgcctgcgcctggaggcgtacaagaagatc
gcggccgccacggacgcgcccctgctggccgaggtccgcgcggagctcgtcgacaggtac
ggcgcactgcccgacgtcgccagcgccctcttcgacgtcgccgacttccgcaaccatgcc
cgccgtgcgggtctcacggacgtcaccgcgcagggcaagcacgtgcggttcgcgccggtg
gacctgcccgagtcggcgcagctgcggctcaagcgcctgtacccgggcaccgtcctcaag
cccgcgatccgcgcgttcctcgtgccgttcccgacgacggcgcgcatcggcgggcagccc
ctgcgcggtgccgaggtgctggcgtgggcgcggcagctcgtggacgccgtcgtgctgggc
gaggtgagcgcggcggcgtcggtgggtacggcgcggtag
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