Yersinia entomophaga: PL78_03210
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Entry
PL78_03210 CDS
T09771
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
yeg
Yersinia entomophaga
Pathway
yeg03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
yeg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
PL78_03210
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
yeg03400
]
PL78_03210
Enzymes [BR:
yeg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
PL78_03210
DNA repair and recombination proteins [BR:
yeg03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
PL78_03210
BRITE hierarchy
Motif
Pfam:
MFD_D3
UvrB_inter
DEAD
TRCF
Helicase_C
CarD_TRCF_RID
ResIII
UB2H
ERCC3_RAD25_C
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
ANI28850
UniProt:
A0A3S6EY76
LinkDB
All DBs
Position
complement(696762..700208)
Genome browser
AA seq
1148 aa
AA seq
DB search
MSQQYRYSLPERRGDIRQLGQLTGAACAIECAEIIERHPGPVMLIAPDMQNALRLRDEIQ
QFTAHSVTTLSDWETLPYDSFSPHQDIISTRLSCLYQLPAMKRGVIILPVNTLMQRVCPH
EFLHGHALVMKKGQHLSRDKLRSQLEQAGYRSVDQVMEHGEFATRGALLDLYPMGSEEPY
RIDFFDDEIDSLRVFDVDSQRTLSEVEHINLLPAHEFPIDQAAIELFRSQWREQFEVRRD
PEHIYQQVSKGIWPAGIEYWQPLFFSQALPTLFSYLPDNTLLVNTGDLEAAAERFWQDVN
QRYESRRIDPMRPLLAPETLWLRTDGLFSELKDWPRIQLKTDVLPKKAANTNLDYQGLPD
VAVQAQAKAPLDNLRRFIEGFSGSVVFSVESEGRRETLQDLLGRIKLRPTLISRLDEVKK
TGHYLMIGAAERGFLDHIRQLALICESDLLGERVSRRRQDNRRTINTDTLIRNLAELRPG
QPVVHLEHGVGRYLGLTTLEAGGIKAEYLILTYAGEDKLYVPVSSLHLISRYSGGADENA
PLHKLGGDAWTRARQKAAEKVRDVAAELLDIYAQRAVKSGFKFKQDREQYQLFCQSFPFE
TTPDQEQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVNNNKQVAVLVPTTL
LAQQHFDNFRDRFATWPVRIEMLSRFRSAKEQQVILEQAAEGKIDILIGTHKLLQSDLHW
KDLGLLIVDEEHRFGVRHKERIKAMRADVDILTLTATPIPRTLNMAMSGMRDLSIIATPP
ARRLAVKTFVREYDNLVVREAILREVLRGGQVYYLYNDVENIEKAAQRLAELVPEARIAI
GHGQMRERDLERVMNDFHHQRFNVLVCTTIIETGIDIPSANTIIIERADHFGLAQLHQLR
GRVGRSHHQAYAYLLTPNPKAMTTDAKKRLEAIASLEDLGAGFALATHDLEIRGAGELLG
EDQSGQMTTIGFSLYMELLESAVDALKEGREPSLEDLTSNQTEIEMRMPVLLPDDFIPDV
NIRLSFYKRIASARDDVELDELKVELIDRFGLLPDAARFLLQTASLRQHAQKLGIKRIEG
NERGGFIEFGEKNKVDPVYLIGLLQRQPQIFRLEGPTKLKFMQDLSDRTKRLKFVEELLA
SFEQHRIA
NT seq
3447 nt
NT seq
+upstream
nt +downstream
nt
atgtcccaacaataccgttactcattacctgagcgccgtggcgatatacgccagttaggc
caattaaccggcgctgcctgcgccatcgaatgcgccgaaattattgaacgccatccggga
ccggtgatgttaatcgcgccggatatgcaaaatgccctgcgcctgcgggatgaaattcag
caatttactgcccacagcgtcacgactttatccgactgggaaacgctgccttacgacagt
ttctccccccatcaggatattatttccacccgtttatcttgcctgtatcagttaccggcg
atgaaacgcggcgtgatcattcttcctgtaaatacgctgatgcagcgggtctgtcctcac
gaattcctgcacggtcacgcgctggtcatgaaaaaaggccagcatttatctcgcgataaa
ctgcgttcccaattggagcaagctggctaccgcagcgtagatcaggtgatggaacacggt
gaatttgctacccgaggagcgcttttggatttatatccaatgggcagcgaagaaccttat
cgcattgatttttttgatgatgaaatcgacagcctgcgggtatttgacgttgactctcaa
cgcaccctgtcggaagtggaacacatcaatttattgcctgctcatgagtttcctattgat
caggccgccattgagctatttcgcagccagtggcgcgagcagtttgaagtccgacgcgac
cctgaacatatttaccagcaggtgagcaaaggcatctggcctgcgggtattgagtactgg
caaccgctatttttcagtcaggcgttacccaccctatttagctacctgccggacaacacc
ttattggtgaataccggcgatctggaagccgccgccgagcgtttctggcaggatgtcaat
cagcgttatgaaagccgtcgcattgaccccatgcggcctttgctggcaccggaaaccctg
tggctgcggactgacggtctgtttagcgagctcaaagactggccacgcattcaacttaaa
actgacgttctgccgaaaaaagccgccaacaccaatctggattatcaggggttgcctgac
gtcgcggtacaggcacaggcgaaagctccgttagataacctgcgccgctttattgaaggc
ttcagcggcagcgtagtgttctcggtagaaagtgaaggccgacgcgaaaccctacaggat
ttactgggccggattaaattacgcccgacgctgatttcccgtttggatgaagtgaaaaaa
accggtcactatttgatgatcggtgcggcggaacgcggttttctcgatcatattcgtcag
ctagcgctgatttgcgaaagcgatttgctcggtgaacgcgtaagccgtcgccgccaggat
aatcgccgcactattaataccgatactctgattcgcaatctggcggaactgcgtcccggc
cagccagtggtgcatctggagcatggcgttggccgttatcttggtctgacaacgctggaa
gccggtggtatcaaagcagaatatctgattctgacctatgccggggaagacaaactgtat
gtgcctgtatcctccctgcacctcatcagccgttattctggcggtgccgatgaaaacgcg
ccgctgcataaactgggcggtgacgcttggacccgcgcccgtcagaaagctgcggagaaa
gttcgggacgtagccgccgagctgctggatatttacgcccagcgtgcggtgaagtccggc
tttaaattcaaacaggatcgcgaacaatatcagctgttctgccaaagcttcccgtttgaa
accacgccagatcaggaacaggcgattaatgcggtgctgagcgatatgtgccaaccgttg
gcgatggaccgtctggtgtgtggtgacgtcggcttcggtaaaaccgaagtggcaatgcgc
gcggctttccttgcggtgaataataataagcaagtggcagtattagtgccgaccaccctg
ctggcgcagcagcattttgataatttccgcgaccgttttgctacctggccggtccgtatc
gaaatgctttctcgtttccgcagcgcaaaagagcagcaggtgattctggagcaggcggca
gaagggaaaatcgatattctgattggcacccataaattgctgcaaagtgatttacactgg
aaagatctgggcctgctgattgtggatgaagaacaccgctttggcgtgcgccacaaagag
cgaatcaaggccatgcgcgccgatgtggacattctgacgctgaccgctacgccgattccc
cgcacgctgaatatggcgatgagcggtatgcgtgacctgtcgattattgccacgccgcca
gcgcgccgtttggcggtaaaaacctttgtgcgcgaatacgacaatctggtcgtccgcgag
gccattctgcgtgaagtattacgcggtgggcaggtttattatctgtacaacgacgttgaa
aatattgagaaagcagcccaacgtttggcggaactggtgccagaagcccgcattgctatc
ggccacggtcagatgcgtgagcgggatctggaacgggtgatgaatgatttccatcatcaa
cgctttaacgttttggtctgcaccacaattattgaaaccggtattgatattcctagcgcc
aataccattattatcgagcgagccgaccacttcggtctggcgcagttgcatcagctacga
ggccgcgtcggtcgttctcaccaccaggcctacgcttacctgctgacgccaaatccgaaa
gccatgacgaccgatgccaaaaaacggctggaagccattgcttcactggaagatctcggc
gccggtttcgctttggcgactcacgatctggaaattcgtggcgcgggggaactgttgggg
gaagatcaaagcggccagatgacgaccattggtttctcattgtatatggaactattggaa
agcgcggtcgatgcattgaaagaagggcgcgaaccgtcgctggaggatctcaccagcaac
cagaccgaaatcgaaatgcgtatgccggtgctgttgcccgacgattttattcctgatgta
aatatcaggctttcattctataagcgtatcgccagcgcccgcgatgacgtcgagctggat
gaactgaaagtcgaactgatcgatcgtttcggtctgttgccggatgcggcgcgattcctg
ctgcaaaccgcttcgttacgtcaacatgcgcaaaaactgggcattaaacggattgaaggc
aatgaacgcggtggttttatcgagttcggcgagaaaaacaaggtcgatccggtgtatctg
attggtttattgcagcgtcagccgcagatattccgattagaaggcccaaccaagctgaag
tttatgcaggatttaagcgatcggaccaaacgtttgaaatttgttgaggaactactggcc
tctttcgaacagcaccgtatcgcttaa
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integrated database retrieval system
