Yersinia enterocolitica subsp. enterocolitica 8081 (serotype 0 8): YE0287
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Entry
YE0287 CDS
T00469
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase beta' chain
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
yen
Yersinia enterocolitica subsp. enterocolitica 8081 (serotype 0:8)
Pathway
yen03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
yen00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
YE0287 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
yen03021
]
YE0287 (rpoC)
03400 DNA repair and recombination proteins [BR:
yen03400
]
YE0287 (rpoC)
Enzymes [BR:
yen01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
YE0287 (rpoC)
Transcription machinery [BR:
yen03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
YE0287 (rpoC)
DNA repair and recombination proteins [BR:
yen03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
YE0287 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-ProteinID:
CAL10419
UniProt:
A1JII1
LinkDB
All DBs
Position
334125..338345
Genome browser
AA seq
1406 aa
AA seq
DB search
MKDLLKFLKAQTKTEEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCAR
IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSL
PSRIGLLLDMPLRDIERVLYFESYVVIEGGMTNLERRQILTEEQYLDALEEFGDEFDAKM
GAEAIQALLKNMDLEAECEILREELNETNSETKRKKLTKRIKLLEAFVQSGNKPEWMILT
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQ
EAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPY
LRLHQCGLPKKMALELFKPFIYGKLELRGLATTIKAAKKMVEREEAVVWDILDEVIREHP
VLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA
RALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTRDCVNAKGEGMVLTGPKEAERIYRAG
LASLHARVKVRITEEIRNTEGESTSRTSIIDTTVGRAILWMIVPKGLPYSIVNQPLGKKA
ISKMLNTCYRILGLKPTVIFADQIMYTGFAYAARSGASVGIDDMVIPEAKAGIIEEAETE
VAEIQEQFQSGLVTAGERYNKVIDIWAAANERVAKAMMDNLSVEDVVNRDGVVEQQVSFN
SIFMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHNGIVMTPVIEGGDVKEPLRDRVL
GRVTAEEVIKPGTADILVPRNTLLDEKWCDLLEENSVDSVKVRSVVSCETDFGVCANCYG
RDLARGHIINKGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAESSIQVKNKGSLKL
SNVKFVTNAAGKLVITSRNTELKLIDEFGRTKESYKVPYGAVMAKGDGAEVQGGETVANW
DPHIMPVVTEVSGFIRFADMIDGQTITRQTDELTGLSSLVVLDSAERTGSGKDLRPALKI
VDAKGDDVLIPGTDMPAQYFLPGKAIVQLEDGIQIGAGDTLARIPQESSGTKDITGGLPR
VADLFEARRPKEPAILAEISGIISFGKETKGKRRLVISPLDGSDAYEEMIPKWRQLNVFE
GEIVERGDVVSDGPESPHDILRLRGVHAVTRYITNEVQEVYRLQGVKINDKHIEVIVRQM
LRKGTIVDAGSTDFLEGEQAEMSRVKIANRKLAAEGKIEATFTRDLLGITKASLATESFI
SAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYAYHQDRMRRKAQGEAPV
VPQVSADEATANLAELLNAGFGNSKD
NT seq
4221 nt
NT seq
+upstream
nt +downstream
nt
gtgaaagacttattaaagtttctgaaagcgcaaactaagaccgaagagtttgatgcgatc
aaaattgctctggcctcgccagacatgatccgttcctggtcattcggtgaagttaaaaag
ccggaaaccattaactaccgtacgttcaaaccagaacgtgacggccttttctgcgcccgt
atctttggcccagtaaaagattacgaatgcctgtgcggtaagtacaagcgtttgaaacac
cgcggtgttatttgtgagaaatgcggcgttgaagtgactcaaaccaaagtacgccgtgag
cgtatgggtcacatcgaactggcttctccgactgcgcacatctggttcctgaaatcgttg
ccatcccgcatcggtttgctgctggatatgccattacgtgacatcgaacgtgtactgtac
ttcgaatcctatgtggttattgaaggcggtatgaccaacctggaacgtcgtcagatcctg
actgaagagcagtatctggacgcgttggaagagtttggtgatgagttcgacgcgaagatg
ggcgccgaagctattcaggccttgttgaaaaacatggatctggaagcagagtgcgagatc
ctgcgcgaagaattgaacgaaacaaattctgaaaccaagcgtaagaagctgaccaagcgt
atcaagctgctggaagcgttcgtacagtctggcaacaagccagagtggatgatcctgact
gtgctgcctgtgctgccgccagatctgcgtccattggttccgttggatggcggtcgtttt
gcgacttctgatctgaacgatttgtatcgtcgcgtgatcaaccgtaacaaccgtctgaaa
cgcctgctggacttggctgctccggacatcatcgtgcgcaatgaaaagcgtatgctgcaa
gaagcagtagatgcattgctggataacggccgtcgtggtcgtgcgattaccggctctaac
aagcgtccgttgaagtcactggctgacatgatcaaaggtaagcaaggtcgtttccgtcag
aacttgctgggtaaacgtgttgactactcaggccgttcggttattaccgttggcccatac
ctgcgtctgcatcagtgcggtctgccgaagaaaatggctcttgagctgttcaaaccgttc
atctacggcaagctggaattgcgtggtcttgctaccaccattaaagccgccaagaagatg
gttgagcgtgaagaagcggttgtttgggatatcctggatgaagttatccgcgaacaccca
gtgctgctgaaccgtgcaccaacccttcaccgtttgggtatccaggcgtttgaaccggtt
ctgatcgaaggtaaagcaatccagttgcacccactggtttgtgcggcatataacgccgac
ttcgacggtgaccaaatggctgttcacgtaccgctgacactggaagctcagttagaagca
cgtgcgttgatgatgtctactaacaacatcctgtcaccagcgaacggcgagccaatcatc
gttccttctcaggacgttgtattgggtctgtattacatgacccgtgactgtgttaacgcc
aaaggcgaaggcatggtactgactggcccgaaagaagctgagcgtatttatcgcgccggc
ctggcatctctgcatgcgcgggtaaaagtccgtattaccgaagaaattcgtaataccgaa
ggcgaaagcacttcgcgtaccagcattatcgatacgactgtaggccgtgctattttgtgg
atgatcgtcccgaaaggcctgccttactctatcgttaaccagccgctgggcaaaaaagct
atctccaagatgctgaacacttgttaccgcatcctgggcttgaagccaacggttatcttt
gctgaccagatcatgtacaccggttttgcttacgcagcacgctcaggcgcctctgtaggt
atcgatgacatggttatcccagaagcgaaagcagggatcatcgaagaagctgaaactgaa
gttgccgagatccaggaacagttccaatccggtctggtaacagcaggcgaacgttataac
aaagtgatcgatatctgggccgcggctaacgaacgtgttgctaaggcgatgatggataac
ttgtctgtagaagatgttgtcaaccgtgacggcgttgttgaacagcaagtgtcattcaac
agcatctttatgatggccgactccggtgcgcgtggttctgcggcacagattcgtcagctg
gcagggatgcgtggtctgatggctaagccagatggctcgatcattgaaacgccaatcacc
gcgaacttccgtgaaggtttgaacgtacttcagtacttcatctcaacccacggtgcgcgt
aaaggtttggcggataccgcattgaaaactgcgaactctggttatctgacccgtcgttta
gttgacgtggcacaggatctggtcgtaaccgaagacgattgtggtacccataacggtatc
gtgatgaccccggttatcgaaggtggtgatgttaaagaaccactgcgcgatcgcgttctg
ggtcgtgtgaccgctgaagaagttatcaagccgggtacggctgatattctggttccacgt
aacaccctgttggacgaaaaatggtgtgatctgttagaagaaaactccgtcgacagcgtt
aaagttcgttcagtagtaagctgtgaaactgactttggtgtgtgtgcaaactgctatggt
cgcgacctggcacgtggtcacatcatcaacaaaggtgaagcggttggtgttattgcagca
cagtccatcggtgagccgggtacccagcttacgatgcgtacgttccacatcggtggtgcg
gcatctcgtgcggcagcagagtccagcattcaggttaagaacaaaggcagcttgaaactg
agcaacgtcaagttcgttaccaatgcagcgggcaagctggttattacttctcgtaatacc
gagctgaaactgatcgacgaattcggccgtactaaagaaagctacaaagtgccttacggt
gctgtaatggctaaaggcgatggcgcagaagtccaaggcggcgaaaccgttgctaactgg
gatccgcacatcatgccagttgtgaccgaagtgagcggtttcatccgcttcgcggacatg
attgacggccagaccattacacgccagaccgacgaactgactggtttgtcttctctggtg
gtattggacagcgcagagcgtaccggtagcggtaaagacctgcgtccggcactgaaaatc
gttgatgccaaaggcgacgacgtattgatcccaggtactgatatgcctgctcaatacttc
ctgccaggtaaagcgattgtacagctggaagacggtattcagatcggtgcgggtgatacc
ctggcgcgtattcctcaggaatcaagcggtaccaaggatattaccggtggtctgccacgt
gttgctgacttgttcgaagcacgtcgtccgaaagagcctgcaatcctggctgaaatcagc
gggatcatctcgttcggtaaagagaccaaaggcaagcgccgtctggttatctcaccgttg
gatggtagcgatgcatacgaagagatgattccgaaatggcgtcagctcaacgtgttcgaa
ggtgaaattgtagaacgcggtgacgtggtttccgatggcccagaatctccacacgacatt
ctgcgtctgcgtggcgttcacgcggtaactcgttacatcaccaacgaagtgcaggaagtt
taccgtctgcaaggcgttaagattaacgataaacacatcgaagttatcgttcgtcagatg
ctgcgtaaaggcaccatcgttgatgcaggtagcaccgacttcctggaaggcgagcaggca
gaaatgtctcgcgttaaaatcgctaaccgtaagctggcagctgaaggcaaaattgaggct
acgttcacacgtgacctgctgggtatcaccaaggcatccctggcgaccgagtccttcatc
tctgcggcttcgttccaggaaaccacgcgcgttcttactgaagcggcagttgccggtaaa
cgtgatgaactgcgtggcctgaaagaaaacgtcatcgtgggccgtctgatcccagccggt
accggttacgcttatcatcaggatcgtatgcgccgtaaagcacagggtgaagcaccagta
gttccgcaagtgagcgcggacgaagcgactgctaacctggctgaattgctcaacgctggt
tttggtaacagcaaagactaa
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integrated database retrieval system