Yersinia frederiksenii: AW19_4013
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Entry
AW19_4013 CDS
T03606
Symbol
ddlB
Name
(GenBank) D-alanine--D-alanine ligase B
KO
K01921
D-alanine-D-alanine ligase [EC:
6.3.2.4
]
Organism
yfr
Yersinia frederiksenii
Pathway
yfr00470
D-Amino acid metabolism
yfr00550
Peptidoglycan biosynthesis
yfr01100
Metabolic pathways
yfr01502
Vancomycin resistance
Brite
KEGG Orthology (KO) [BR:
yfr00001
]
09100 Metabolism
09106 Metabolism of other amino acids
00470 D-Amino acid metabolism
AW19_4013 (ddlB)
09107 Glycan biosynthesis and metabolism
00550 Peptidoglycan biosynthesis
AW19_4013 (ddlB)
09160 Human Diseases
09175 Drug resistance: antimicrobial
01502 Vancomycin resistance
AW19_4013 (ddlB)
09180 Brite Hierarchies
09181 Protein families: metabolism
01011 Peptidoglycan biosynthesis and degradation proteins [BR:
yfr01011
]
AW19_4013 (ddlB)
Enzymes [BR:
yfr01000
]
6. Ligases
6.3 Forming carbon-nitrogen bonds
6.3.2 Acid-D-amino-acid ligases (peptide synthases)
6.3.2.4 D-alanine---D-alanine ligase
AW19_4013 (ddlB)
Peptidoglycan biosynthesis and degradation proteins [BR:
yfr01011
]
Precursor biosynthesis
Amino acid ligase
AW19_4013 (ddlB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Dala_Dala_lig_C
Dala_Dala_lig_N
CPSase_L_D2
ATP-grasp_4
ATPgrasp_ST
RimK
ATP-grasp
ATPgrasp_Ter
ATPgrasp_YheCD
TTL
Motif
Other DBs
NCBI-ProteinID:
AJI87576
LinkDB
All DBs
Position
4355804..4356724
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AA seq
306 aa
AA seq
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MADKVAVLLGGTSAEREVSLLSGQAVLAGLREAGIDAHGVDTRDFPVTQLKEQGFNKVFI
ALHGRGGEDGTLQGVLEFLKLPYTGSGVMASALTMDKLRTKLVWQALGLPISPYVALNRQ
QFETLSSEELAACVAKLGLPLIVKPSHEGSSVGMSKVDWASELHAALVEAFRHDTDVLIE
KWLSGPEFTVAILGEDVLPSIRIQAPGVFYDYEAKYLSDETQYFCPSGLSVELEQQLAEL
ALQAYQALGCSGWGRVDVMQDSDGGFYLLEVNTSPGMTSHSLVPMAARQYGLSFSQLVAR
ILTLAD
NT seq
921 nt
NT seq
+upstream
nt +downstream
nt
atggctgataaagttgcggtactgctgggtggaacctctgctgaacgtgaagtttcattg
ctatcgggccaggcggttttagccggtttgagagaagccggtatcgacgcccatggggta
gataccagagacttcccggtcactcaattgaaagaacagggttttaataaggtctttatt
gctctgcatggccgtggtggcgaagacggtacattgcaaggtgtgttggagttcctgaaa
ctgccttataccggcagcggcgtgatggcttcggccctgaccatggacaaattgcgcacc
aaattggtgtggcaagccttaggtttgccaatttcgccttatgtggcgctgaaccgtcaa
cagtttgaaacactttcgtcagaggaattagcggcatgtgtcgctaagcttggtctgcct
ttaatcgttaaaccaagtcacgaaggctctagcgtgggcatgagtaaagttgactgggct
agcgaattgcatgctgctctggttgaagctttccgtcatgacaccgatgtgctgattgaa
aaatggttgagcggcccggaattcacggtcgctatccttggcgaggatgttttaccgtcc
atcaggattcaagcacccggtgtgttttatgattatgaagccaagtatctgtctgatgaa
acacagtatttctgcccaagcggtttaagtgttgagttagagcaacaattagcagaatta
gcattacaggcttatcaggcgctaggttgcagcggttggggccgggttgatgtcatgcaa
gacagcgacggcggtttttatctgctggaagtgaatacttcaccggggatgaccagccac
agtttagtgccaatggcagcccgccaatatgggttgagtttttcccagttggtggcccga
attctgacgttggctgactga
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