Yimella sp. cx-51: J5M86_03210
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Entry
J5M86_03210 CDS
T07124
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
yim
Yimella sp. cx-51
Pathway
yim03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
yim00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
J5M86_03210 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
yim03400
]
J5M86_03210 (mfd)
Enzymes [BR:
yim01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
J5M86_03210 (mfd)
DNA repair and recombination proteins [BR:
yim03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
J5M86_03210 (mfd)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
CarD_TRCF_RID
Helicase_C
ResIII
UB2H
RecG_dom3_C
Dehydratase_SU
Glyco_tran_WecG
Motif
Other DBs
NCBI-ProteinID:
QTH39493
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All DBs
Position
663564..667118
Genome browser
AA seq
1184 aa
AA seq
DB search
MLQLLAADEGVQRVLKHRGSADLVDIASAPGLRAPLLAQLNSAGDERTPLLVVTATGRDA
GDLVAALRTLMGDDAIAEFPSWETLPHERLSPRSDTVGRRLAVLRRLAHPDDRDPAHGPI
QVVVASVRALMQPIAKGLGDLAPVSLKADQDASLDEVVAALSAAAYTRTDLVERRGEFAV
RGGILDVFPPTEQHPVRVDFFGDTVDEIRWFKVADQRSSDIAEHGLWAPPCRELLLTDDV
RERARTLAAQLPGVADMLHKVAEGIAVEGMESLSPILLGDRMETLLDVLPKGTHVVLSDP
ERVRTRAHDLVATSTEFLEASWSNAAAGNAVPVDLQSVLGTASYWSLVELRDHALARGLP
WWSMSSFATDEELTEFSEDDLPGERVTLRTEEVPQYRSDTEAAVADIRTWTAAGLKTLVL
TDGPGLGKRVRELLLDNEIPLSEELASGKVTTAVGTLGRGFALPSSEFVLLTEIDLIGSS
GQGGSTKDMRKMPSRRRNQVDPLQLRPGDFVVHEAHGVGKFVEMMQRTVGGATREYLALE
YAPSKRGHPGDRLFVPTDQLDQITRYVGGEAPTLNKMGGSDWQTTKSKARRHVRQIAGEL
IRLYSARMATPGHAFAADTPWQRELEDAFAYVETPDQLSSIDEVKADMEKTVPMDRLICG
DVGYGKTEIAVRAAFKAIQDGKQVAVLVPTTLLVKQHFSTFSDRYAGFPVTVKALSRFQS
DKEAREVIDGLATGAVDLVIGTHRLLSKEIQFKDLGLVVVDEEQRFGVEHKEQLKQMRTA
VDVLAMSATPIPRTLEMAVTGIREMSTLATPPEERHPVLTFVGGYDEKQVVAAIRRELMR
EGQVFLVHNKVQTIEKAASRLRELVPEARIGTAHGKMGEHRLEEVVVDFWERRLDVLVCT
TIVETGLDISNANTLIVERSDVLGLSQLHQLRGRVGRGRDRAYAYFLYPTEKPLTETAHD
RLQTIAQHTDLGSGMQVAMKDLEIRGAGNLLGGEQSGHIQGVGFDLYVRMVGEAVADFRG
DELDKGPAEIKIELPVDAHLPHDYVPGERLRLEAYKKLATVATEEELTEIAEELRDRYGA
PPEPVQHLLEVARLRVLARQAGIGDIGVQGKFVRFGPVEGLPESRQLRLQRLYKGAQLKP
ALKTILVPAPMTKPVAGQPLRNTEVLQWAAQLIRSVLLDQPAAA
NT seq
3555 nt
NT seq
+upstream
nt +downstream
nt
atgctccaactcctcgccgccgacgagggcgtgcagcgtgtgctcaagcaccgtggcagc
gccgacctggtcgacattgcctctgcgcctggcctgcgcgcacctctgctcgcgcagctc
aactccgctggcgacgagcgcacgccgttgctggtcgtcaccgcgacgggccgcgacgcc
ggcgacttggtggcggccctgcgcaccctgatgggggacgacgcgatcgcggagttcccg
agctgggaaacgctgccgcacgagcggctcagcccgcgttccgacaccgtcggacgtcgt
ttggccgtgctgcgccgactggcgcatccagacgatcgcgaccctgctcacggacccatc
caggtggtcgtggccagcgtccgggctctcatgcaaccgatcgccaaagggctgggtgac
ctcgcgccggtgagcctcaaggcagaccaggacgcttcgctcgatgaggtcgtcgcggcg
ctttcggcagctgcctacacccgcaccgacctggtcgaacgacgcggtgagttcgccgtc
cgcggcggcatcctcgatgtcttcccgcccaccgagcagcaccccgtacgggtcgacttc
ttcggcgacaccgtcgatgagatccgctggttcaaggtggctgatcagcgctccagcgac
atcgccgagcacggcctctgggcgccgccctgccgcgagttgctcctcactgacgacgtg
cgtgaacgtgcccggacgctcgcggcgcaactgccgggcgtggccgacatgctgcacaag
gtggccgagggaatcgcggtcgaaggcatggagtctctgtcgccgatcctgctcggcgat
cgcatggagacactgctcgacgtgttgccgaagggcactcatgtcgtgctctccgacccg
gaacgcgtccgcacccgtgcgcacgacttggtggccaccagcaccgagttcctggaggcg
agctggtcgaacgccgcggcgggcaacgccgtgccggtcgacctccagagtgtgctcggc
acggcgtcctactggtcactggtcgaactgcgcgaccacgcgctcgcccgaggcctgccg
tggtggtcgatgtcgtccttcgccaccgatgaagaactcaccgagtttagcgaggacgac
ctgcccggcgagcgcgtcacccttcgcaccgaggaggtgccgcagtaccgcagcgacact
gaagcagccgttgccgacatacgcacctggacggccgccgggctgaagacgctcgtgctc
accgacggcccgggtctaggtaagcgagtgcgagagctgttgctggacaacgagattccg
ttgtcggaagagctggccagcggcaaagtcactaccgccgtcgggacgctgggcagaggc
ttcgcgcttccgtcgagcgagttcgtgctgctcaccgagatcgacctgatcggatcgtcc
gggcagggcggttccaccaaagacatgcgcaagatgccgtcgcggcggcgcaaccaggtc
gacccgttgcagttgcgtccgggcgacttcgtcgtgcatgaagcgcacggcgtcggcaag
ttcgtcgagatgatgcagcgcacggtcgggggagcgacccgcgagtacctcgcgttggag
tacgcaccgtccaagcgcggacatcccggcgatcgtctgttcgtgcccaccgatcagctc
gaccagatcacccgctacgtcggcggcgaagcgccgacgctcaacaagatgggcggatcc
gactggcagacaacgaaatcgaaggcccgtcgacacgtccggcagatcgcgggagagctc
atcaggctttactccgcccgcatggccaccccgggtcacgccttcgccgctgacaccccg
tggcagcgggagttggaggacgccttcgcttacgtcgagacccccgaccagttgtcgtcc
atcgacgaggtcaaggccgacatggagaagaccgtgccgatggaccgtctcatctgcggc
gacgtcggctacggcaagaccgagatcgcggtgcgcgctgccttcaaggcgatccaggac
ggcaagcaggtggccgtgctcgtgcccaccacgttgctggtcaagcagcacttcagtacc
ttctccgatcggtacgccggcttcccggtgacggtgaaggcgctgtcgcgcttccagagc
gacaaggaagctcgcgaggtgatcgacggactcgccaccggagcagtcgatctggtgatc
ggcacgcatcggttgctgagcaaggagatccagttcaaggacctcggtctggtcgtggtc
gacgaggagcagcgcttcggtgtcgagcacaaggaacagttgaagcagatgcgcacagct
gtcgacgtgctggcgatgtcagccacgccgatcccgcgcacgctggaaatggcggtcacc
ggaatccgcgaaatgtcgactctcgcaacgccgcccgaggagcgccaccccgtgctcacc
ttcgtcggcggctacgacgagaagcaggtcgtcgcggcgatccgacgcgagctgatgcgc
gagggacaggtcttcctcgtgcacaacaaggtgcagacgatcgagaaggccgcctcgcgt
ctgcgtgagctcgtgcccgaagcccgcatcggcaccgcccacggcaagatgggcgagcac
cgcttggaagaagtcgtcgtcgacttctgggagcggcgactcgacgtcctggtgtgcacc
accatcgtcgagaccggcctcgacatctccaacgccaacaccctcatcgtggagcgctcc
gacgtcctgggtctctcgcagctgcaccagctgcgcggacgagtgggtcgcggtcgtgac
cgtgcgtacgcctatttcctctacccgacggagaagccgctcaccgagacggcgcacgac
cggctgcagaccatcgcccagcacaccgacctcggttcgggcatgcaggtggcgatgaag
gatctcgagatccgtggcgccggaaacctgctcggcggtgagcagtcgggtcacatccag
ggcgtcggtttcgacttgtacgtccgcatggtcggggaagcggtggccgacttccgcggg
gacgaactcgacaagggccccgccgagatcaagatcgaactccccgtcgacgcccacctc
ccgcacgactacgtgccgggggagcggctgcggctggaggcgtacaagaagctcgccacc
gtcgccaccgaggaggagctgacggagatcgccgaagaactgcgcgatcgctacggcgca
cccccggagccggtgcagcacctgctggaggtcgcgcgacttcgcgtcctcgcccgccag
gcaggcatcggcgacatcggcgtccagggcaagttcgtgcgtttcggcccggtcgagggt
ctgccggagagcaggcagctgcggctgcagcgtctctacaagggagctcagctcaagcct
gcactcaagacgatcctggtgcccgcgcccatgaccaagccggtcgccgggcagccgttg
cgcaacaccgaggtgctccagtgggccgcacagctgatccgctcggtgctgctcgaccag
cccgcagccgcctga
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