Yersinia intermedia: CH53_1273
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Entry
CH53_1273 CDS
T03608
Name
(GenBank) DEAD/DEAH box helicase family protein
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
yin
Yersinia intermedia
Pathway
yin03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
yin00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CH53_1273
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
yin03019
]
CH53_1273
03009 Ribosome biogenesis [BR:
yin03009
]
CH53_1273
Enzymes [BR:
yin01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
CH53_1273
Messenger RNA biogenesis [BR:
yin03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
CH53_1273
Ribosome biogenesis [BR:
yin03009
]
Prokaryotic type
rRNA helicases
CH53_1273
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
DeaD_C
ResIII
CMS1
DRTGG
Motif
Other DBs
NCBI-ProteinID:
AJJ17641
UniProt:
A0A0T9LZN1
LinkDB
All DBs
Position
complement(1459630..1461633)
Genome browser
AA seq
667 aa
AA seq
DB search
MTTELETSFADLGLSAPILSALTDLGYEKPSPIQLECIPHLLNGRDVLGMAQTGSGKTAA
FGLPLLHNIKAELKSPQVLVLAPTRELAIQVAQALSDFSKHINGVNVVALYGGQRYDVQL
RALRQGPQIVVGTPGRLLDHLKRGTLNLSNLSGLVLDEADEMLRMGFIEDVENILAQIPA
EHQTALFSATMPDAIRRITRRFMKDPQEVRIQSSVTTRPDISQSFWRVGGGYRKNEALVR
FLESEDFDAAIIFVRTKNGTLEVAEALESSGYNCAALNGDMNQSLREQTLNRLKDGRLDI
LIATDVAARGLDVDRISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLQ
NIERTMKLTIPEVQLPNPELLGERRLAQFAAKVGQQLESSDLDLYRALLAKLQPEEEFDL
ETLAAALLKMAQGERPLILPPEAPRRPQREFNSRDDRGSDRGRDRSDSRRDSRPDSRADS
RDGGERPARRERRDVGEMELYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFASH
STIELPKGMPGEMLSHFTRTRILNKPLNMQLLGDAQPHERRERPAGGAGAGGERRGGGAG
RSFGGERRDGAAGAPPRRSFGSDRAPAGGGERRGNRDGQRSAAPRREDAAAPAPAAAAPT
RRRFGDA
NT seq
2004 nt
NT seq
+upstream
nt +downstream
nt
atgactactgagcttgaaacctcttttgctgatctggggctgtccgctcctattctttcc
gctctgactgatcttggttatgaaaaaccatctcctatccagttggaatgtatcccacac
ctgttaaacggccgtgatgttcttggcatggcgcaaacaggcagtggtaaaacagccgcg
tttggtttgccgctgttacacaatattaaagctgagctgaaatcaccgcaggttctggtg
ctggcaccaacccgtgagttggctattcaggtcgcgcaagcactgtctgacttctctaaa
cacattaatggcgtcaacgttgtggccctgtacggcggccagcgttatgacgttcaatta
cgcgctttgcgccaggggccacaaatcgttgttggtaccccaggtcgtctgttagaccac
ctgaaacgcggtactcttaacctgtccaacctgagcggtttagtgttggatgaagcagat
gaaatgctgcgcatgggctttatcgaagacgtcgaaaatattctggcgcagatcccggct
gaacatcagacggcgttgttctctgcaactatgcctgacgcgattcgccgtattacccgt
cgctttatgaaagatccacaggaagttcgcatccagtctagcgtcactacccgccctgac
atcagccagagtttctggcgtgtaggtggtggttatcgcaaaaacgaagcgctggtacgt
ttcctggaatctgaagatttcgatgcggccatcattttcgtgcgtaccaaaaatggcacc
ctggaagtggctgaagctttggaaagtagtggttataactgtgctgccttgaacggtgac
atgaaccagtctttacgtgagcagacactgaaccgcctgaaagatggccgtttggatatt
ctgattgcaactgacgttgcggcacgtggtttggatgttgaccgtatcagcctggttgta
aactatgatatccctatggattcagagtcttacgttcaccgtatcggccgtactggtcgt
gctggtcgcgctggtcgtgcgttgctgtttgttgaaaaccgtgaacgccgtctgttgcaa
aacattgaacgcaccatgaagctgactattccagaagttcagttgccaaaccctgaattg
ctgggcgaacgtcgtttagctcaatttgctgctaaagttggccaacagctggaaagcagt
gatttggacctgtaccgtgcattgctggctaagctgcaaccggaagaagagtttgatctc
gaaacactggctgctgcactgcttaaaatggcacagggcgaacgtcctctgattctgcca
ccagaagctccgcgtcgtccgcagcgtgaattcaattcccgtgatgaccgtggtagcgat
cgtggccgtgatcgtagtgacagccgtcgtgatagtcgccctgatagccgtgctgacagt
cgtgatggtggcgagcgtccagcgcgtcgcgaacgtcgtgatgttggtgagatggaactg
taccgcattgaagtgggccgtgatgatggtgttgaagttcgtcacattgttggcgcgatt
gctaacgaaggcgacatcagcagccgttacattggtaatatcaagctgtttgcttctcac
tcaactatcgagttgccaaaaggtatgccgggcgaaatgttatctcacttcacccgtacc
cgtatcctgaacaagccgctgaacatgcagctgttgggtgatgcacagccacatgaacgc
cgtgagcgtcctgctggcggtgccggtgccggtggtgagcgtcgtggtggtggtgctggc
cgttcattcggtggcgaacgtcgtgatggcgcagcaggtgctcctcctcgccgttcattc
ggcagtgaccgtgctccggccggtggtggcgaacgtcgtggtaaccgcgatggtcagcgc
tcagcagcgcctcgtcgtgaagatgcagcagcgcctgcaccagcagcagcggcacctact
cgccgtcgttttggtgatgcataa
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