Yersinia mollaretii: HRD69_03700
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Entry
HRD69_03700 CDS
T06716
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
ymo
Yersinia mollaretii
Pathway
ymo03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
ymo00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
HRD69_03700 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ymo03021
]
HRD69_03700 (rpoC)
03400 DNA repair and recombination proteins [BR:
ymo03400
]
HRD69_03700 (rpoC)
Enzymes [BR:
ymo01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
HRD69_03700 (rpoC)
Transcription machinery [BR:
ymo03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
HRD69_03700 (rpoC)
DNA repair and recombination proteins [BR:
ymo03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
HRD69_03700 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-ProteinID:
QKJ02175
LinkDB
All DBs
Position
complement(847034..851254)
Genome browser
AA seq
1406 aa
AA seq
DB search
MKDLLKFLKAQTKTEEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCAR
IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSL
PSRIGLLLDMPLRDIERVLYFESYVVIEGGMTNLERRQILTEEQYLDALEEFGDEFDAKM
GAEAIQALLKNMDLEAECEILREELNETNSETKRKKLTKRIKLLEAFVQSGNKPEWMILT
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQ
EAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPY
LRLHQCGLPKKMALELFKPFIYGKLELRGLATTIKAAKKMVEREEAVVWDILDEVIREHP
VLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA
RALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTRDCVNAKGEGMVLTGPKEAERIYRAG
LASLHARVKVRITEEIRNIEGESITRTSIIDTTVGRAILWMIVPKGLPYSIVNQPLGKKA
ISKMLNTCYRILGLKPTVIFADQIMYTGFAYAARSGASVGIDDMVIPEAKAGIIEEAETE
VAEIQEQFQSGLVTAGERYNKVIDIWAAANERVAKAMMDNLSVEDVVNSKGEIEQQVSFN
SIFMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHNGIVMTPVIEGGDVKEPLRDRVL
GRVTAEEVIKPGTADILVPRNTLLDEKWCDLLEDNSVDSVKVRSVVSCETDFGVCANCYG
RDLARGHIINKGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAESSIQVKNKGTLKL
SNVKFVTNAAGKLVITSRNTELKLIDEFGRTKESYKVPYGAVMGKGDGAEVVGGETVANW
DPHIMPVVTEVSGFIRFADMVDGQTITRQTDELTGLSSLVVLDSAERTGSGKDLRPALKI
VDAKGNDVLIPGTDMPAQYFLPGKAIVQLEDGIQIGAGDTLARIPQESSGTKDITGGLPR
VADLFEARRPKEPAILAEISGIISFGKETKGKRRLVISPLDGSDAYEEMIPKWRQLNVFE
GEIVERGDVVSDGPESPHDILRLRGVHAVTRYITNEVQEVYRLQGVKINDKHIEVIVRQM
LRKGTIVDAGSTDFLEGEQAEMSRVKIANRKLAAEGKIEATFTRDLLGITKASLATESFI
SAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYAYHQDRARRKAQGEAPV
VPQVSADEATANLAELLNAGFGNSKD
NT seq
4221 nt
NT seq
+upstream
nt +downstream
nt
gtgaaagacttattaaagtttctgaaagcgcaaactaagaccgaagagtttgatgcgatc
aaaattgctctggcatcgccagacatgatccgttcatggtcgttcggcgaagtgaaaaag
ccggaaaccattaactaccgtacgttcaaaccagaacgtgacggccttttctgcgcccgt
atctttggcccagtaaaagattacgaatgcctgtgcggtaagtacaagcgtttgaaacac
cgtggtgttatttgtgagaaatgcggcgttgaagtgactcaaactaaagtacgccgtgag
cgtatgggtcacatcgagctggcttctccgactgcgcacatctggttcctgaaatctttg
ccttcgcgcatcggtttgttgctggacatgccattacgtgacatcgaacgtgtactgtac
ttcgaatcctatgtggttatcgaaggcggcatgaccaacttagaacgtcgtcagatcctg
actgaagagcagtatctggacgcgttggaagagtttggtgatgagttcgacgcgaaaatg
ggcgctgaggcgatccaagccctgttgaaaaacatggatctggaagctgagtgcgagatc
ctgcgtgaagaattgaacgaaacaaattctgaaaccaagcgtaagaagctgaccaagcgt
atcaagctgctggaagcgttcgtacagtctggcaacaagccagagtggatgatcctgacc
gtgctgcctgtattgccgccagatctgcgtccattggttccattggatggcggtcgcttt
gcgacttctgatctgaacgatttgtatcgtcgcgtgatcaaccgtaacaaccgtctgaag
cgcctgctggacttggctgctcctgacatcatcgtacgtaacgaaaagcgtatgctgcaa
gaagcagtagatgcattgctggataacggccgtcgcggtcgtgcaattaccggctctaac
aagcgtccgttgaagtcactggctgacatgatcaaaggtaagcaaggtcgtttccgtcag
aacttgctgggtaaacgtgttgactactcaggccgttcggttatcaccgtgggtccatac
ctgcgtctgcatcagtgcggtctgccgaagaaaatggcacttgagctgttcaaaccgttc
atctacggcaagctggaactgcgtggtcttgcgaccaccatcaaagcagccaagaagatg
gttgagcgtgaagaagcggttgtttgggatatcttggatgaagttatccgcgaacaccca
gtgctgctgaaccgtgcaccaacacttcaccgtttgggtatccaagcgtttgaaccggtt
ctgatcgaaggtaaggcaatccagttgcacccactggtttgtgcggcatacaacgccgac
ttcgatggtgaccaaatggctgttcacgtaccgctgacactggaagctcagttagaagcg
cgtgcgttgatgatgtctaccaacaacatcctgtcacctgcgaacggcgagccaatcatc
gttccttctcaggacgttgtattgggtctgtactacatgactcgtgactgtgttaacgcc
aaaggcgaaggcatggttctgactggcccgaaagaagccgagcgtatttaccgcgctggc
ttggcatctctgcatgcacgggtaaaagtccgtattactgaagaaattcgtaatatcgaa
ggcgaaagcattacgcgtaccagcattatcgatacgactgtcggccgtgccattttgtgg
atgattgtcccgaaaggcctgccttactctatcgttaatcagccgttgggcaaaaaagct
atctccaagatgctgaacacctgttaccgcatcttaggcttgaaaccaacagttatcttt
gctgaccagatcatgtacaccggttttgcttacgcagcccgttcaggcgcttctgtaggt
atcgatgacatggttatcccagaagcgaaagccgggatcatcgaagaagctgaaactgaa
gttgccgagatccaggaacagttccaatctggtctggtaaccgcaggcgaacgttataac
aaagtgatcgatatctgggccgcagccaacgaacgtgttgctaaggcgatgatggataac
ttatctgtagaagacgtcgttaacagcaaaggcgaaatcgaacagcaggtctccttcaac
agcatctttatgatggccgactccggtgcgcgtggttctgctgcacagattcgtcagcta
gcagggatgcgtggcctgatggctaagccagatggctcgatcattgaaacgccaatcacc
gcgaacttccgcgaaggtttgaacgtacttcagtacttcatctcaacgcatggtgcgcgt
aaaggtttggcagataccgcattgaaaacggcgaactccggttacctgactcgtcgtttg
gttgacgtggcacaggatctggttgtcaccgaagatgactgcggtacccataacggtatc
gtgatgacgccggttatcgaaggtggtgatgttaaagagccactgcgcgatcgcgttctg
ggtcgtgtgaccgctgaagaagttatcaagccgggtacggctgatattctggttccgcgt
aacaccctgttggacgaaaaatggtgtgatctgttagaagataactccgtcgacagcgtt
aaagttcgttcagttgtaagctgtgaaaccgatttcggtgtgtgtgctaactgctacggt
cgcgacctagcacgtggtcacatcatcaacaaaggtgaagcggtaggtgttattgcagca
cagtccatcggtgagccgggtactcagcttacgatgcgtacgttccacatcggtggtgcg
gcatctcgtgcggcagcagaatcgagcattcaggttaagaacaaaggcacgctgaaactg
agcaacgtcaagttcgtcaccaatgcagcgggcaagctggttattacttcgcgtaatacc
gagctgaagctgatcgacgaattcggtcgtactaaagagagctacaaagtgccttacggt
gccgtaatgggcaaaggcgatggcgcagaagtggttggcggcgaaaccgttgctaactgg
gatccgcacatcatgccagttgtgaccgaagtgagcggtttcattcgcttcgcggacatg
gttgacggccagaccattactcgccagaccgacgaactgacgggcttgtcttctctggtg
gttctggattcagcagagcgtaccggtagcggtaaagacctgcgtccagcactgaaaatc
gttgatgctaaaggcaacgacgtattgatcccaggtacagatatgcctgctcaatacttc
ctgccgggtaaagcgattgtacagttggaagacggcattcagatcggcgcgggtgacacc
ttggcgcgtattccgcaagaatcaagcggtaccaaggatattaccggtggtctgccacgt
gttgctgacttgttcgaagcacgtcgtccgaaagagcctgcaatcctggctgaaatcagc
gggatcatctcgttcggtaaagagaccaaaggcaagcgtcgtctggtgatctcaccgttg
gatggtagcgatgcatacgaagagatgattccgaaatggcgtcagctcaacgtgttcgaa
ggtgaaattgtagaacgcggcgacgtggtctctgacggcccagaatctccacacgacatt
ctgcgtctgcgtggcgttcatgcggttacccgttacatcaccaacgaagtgcaggaagtt
taccgtctgcaaggcgttaagattaacgataaacacattgaagttatcgttcgtcagatg
ctgcgtaaaggcaccatcgttgatgcaggtagcaccgacttcttggaaggcgagcaggca
gaaatgtctcgcgttaaaatcgctaaccgtaagctggcagctgaaggcaaaatcgaggct
acgtttacacgtgacctgctgggtatcaccaaggcatccttggcgaccgagtccttcatc
tctgcggcttcgttccaagaaaccacgcgcgttcttactgaagcggcagttgccggtaaa
cgtgatgaactgcgtggcctgaaagagaacgttatcgtgggccgtctgattccagccggt
accggttacgcttatcatcaggatcgtgcgcgccgtaaagcacaaggtgaagcccctgtt
gttccgcaagttagcgcggatgaagcaacggctaacctggctgaattgctcaacgccggt
tttggtaacagcaaagactaa
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