Yersinia mollaretii: HRD69_17210
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Entry
HRD69_17210 CDS
T06716
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
ymo
Yersinia mollaretii
Pathway
ymo03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ymo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
HRD69_17210 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ymo03400
]
HRD69_17210 (mfd)
Enzymes [BR:
ymo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
HRD69_17210 (mfd)
DNA repair and recombination proteins [BR:
ymo03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
HRD69_17210 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MFD_D3
TRCF
UvrB_inter
DEAD
Helicase_C
CarD_TRCF_RID
ResIII
UB2H
ERCC3_RAD25_C
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
QKJ04585
LinkDB
All DBs
Position
3853440..3856886
Genome browser
AA seq
1148 aa
AA seq
DB search
MSQQYRYSLPERRGDTRQLGQLTGSACAVECAEIIERHKGPVMLITPDMQTALRLRDEIQ
QFSSWPVNTLSDWETLPYDSFSPHQDIISARLSCLYQLPAMDRGVIILPINTLMQRVCPH
EFLHGHALVMKKGQHLSRDKLRAQLEQAGYRSVDQVMEHGEFATRGALLDLYPMGSEEPY
RIDFFDDDIDSLRVFDVDTQRTLSEVEQINLLPAHEFPIDKAAIELFRSQWREQFDVRRD
AEHIYQQVSKGIWPAGIEYWQPLFFSQPLPSLFSYLPENTLLVNTGSLESSAERFWLDVN
QRFESRRIDPMRPLLAPDTLWLRVDSLFSELKAWPRVQFKTDEVPTKAANTNLHYQALPD
LAVQAQQKAPLDNLRRFIEAFSGSVVFSVESEGRRETLQDLLARIKISPTLITELSQART
PGHYLMIGAAERGFLDADKQLALICESDLLGERVSRRRQDNRRTINTDTLIRNLAELRPG
QPVVHLEHGVGRYLGLTTLEAGGIKAEYLILTYAGEDKLYVPVSSLHLISRYSGGADENA
PLHKLGGEAWSRARQKAAEKVRDVAAELLDIYAQRAAKSGFKFKLDREQYQLFCQSFPFE
TTPDQEQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVANNKQVAVLVPTTL
LAQQHFDNFRDRFATWPVRIEMMSRFRSAKEQQVILEQAAEGKVDIIIGTHKLLQSDLRW
QDLGLLIVDEEHRFGVRHKERIKAMRADVDILTLTATPIPRTLNMAMSGMRDLSIIATPP
ARRLAVKTFVREYDSLVIREAILREILRGGQVYYLYNDVENIEKATQRLAELVPEARIAI
GHGQMRERDLERVMNDFHHQRFNVLVCTTIIETGIDIPSANTIIIERADHFGLAQLHQLR
GRVGRSHHQAYAYLLTPNPKAMTTDAKKRLEAIASLEDLGAGFALATHDLEIRGAGELLG
EDQSGQLTTIGFSLYMELLENAVDALKEGREPSLEDLTNNQTEIEMRMPVLLPDDFIPDV
NIRLSFYKRIASARNETELDELKVELIDRFGKLPDAARYLLQTAELRQLAQTLGIKRIEG
NERGGFVEFSEKNKVDPVYLIGLLQRQPKIYRLEGPTKLKFMQDLTDRTQRLKFISELLA
AFAQHRVA
NT seq
3447 nt
NT seq
+upstream
nt +downstream
nt
atgtcccaacaatatcgttattcattacctgaacgacgtggcgatacccgtcagttaggt
cagttgaccggctctgcatgcgcggtcgaatgtgcggaaatcattgagcgccataagggt
ccggtaatgttaattacccccgatatgcagacggcgctgcgcctacgcgatgagatccag
caattctcatcatggccggtgaatactctctccgactgggaaacgctgccttatgacagt
ttttctccgcatcaggatattatttcggcccgcctctcctgcctgtatcaactcccagca
atggatcgtggcgttattattctcccgatcaataccctgatgcaacgggtatgcccccat
gagtttctgcatggtcatgcgctggtgatgaaaaagggccagcacctgtcgcgggataag
ttacgcgcccagcttgaacaggcgggatatcgcagtgttgatcaggtcatggagcacggt
gagtttgccacccgtggagcactgctggatctctatccgatgggcagtgaagagccgtat
cgaattgatttctttgatgatgatattgacagtttgcgggtgtttgatgtggatacccag
cgcacactgtctgaagttgagcagataaatttactgcccgcccatgaatttccgattgat
aaagccgccattgagctatttcgcagccaatggcgtgagcagttcgacgtccgccgtgat
gcggaacatatttatcagcaagtgagtaaagggatctggcctgccgggattgagtactgg
cagccgctgttcttcagccaacccttgccctcactgttcagttacttgcctgaaaatacc
ttattggttaacacgggttcgctggaaagttccgctgagcgtttttggctcgatgtgaat
cagcgttttgagagccgccgcattgacccaatgcgccccttgctggcccccgacactctc
tggttgcgggtggattcgctgttcagtgagctaaaagcgtggccacgcgtccaatttaag
acggatgaagtccctaccaaagccgccaatactaacttgcactatcaggcgctgcctgat
ttggcagttcaggcgcagcaaaaagcgccactggataatctacgccgttttattgaggca
tttagcggtagtgttgtcttctccgtggagagcgaggggcgacgcgaaacactgcaagac
ctgctggcgcggataaaaatcagcccaaccctgatcaccgagttatcgcaagcccgcaca
cccggccattatctgatgattggtgccgccgaacgcggcttccttgatgcggataaacag
ctggcgctgatttgcgaaagtgatctattgggcgagcgcgttagccgtcgtcgacaagat
aaccgccgcaccatcaataccgataccctgatccgcaatctggccgagctgcgccccggt
cagccggtggtgcatctggaacacggggtcggccgctatttgggtctgaccacccttgaa
gcgggcggcatcaaagctgaatacttgattttgacctacgccggtgaagataagctctat
gtgccggtctcctccttgcatctgatcagccgttattccggtggcgcagatgaaaatgcg
ccgctgcacaaactgggtggcgaagcctggagccgcgcacggcagaaagccgccgaaaaa
gtgcgcgatgtggcggctgagttgctggatatctacgcacaacgcgccgccaaatcgggc
tttaaattcaagctcgatcgcgagcaatatcagctgttctgccaaagtttcccgtttgaa
accacccccgatcaggagcaggccatcaacgcggtgctcagtgatatgtgccagccgctg
gcgatggacagattagtgtgtggtgatgttggtttcggtaaaaccgaagtggcgatgcgg
gccgccttccttgctgtcgcaaataataagcaagtcgcggtattagtgccgaccaccctg
cttgctcaacagcattttgacaacttccgcgaccgttttgccacttggcccgtgcggatt
gagatgatgtcccgcttccgtagcgccaaagagcaacaagtgattctggagcaagccgct
gaagggaaagtggatattattatcggcacccacaaattgctacaaagtgacctgcgctgg
caagatctcggtctgttgatcgtcgatgaagagcaccgtttcggggtgcgccataaagag
cgtatcaaagccatgcgcgctgatgtggatatcctgacgctcaccgcaacgcctatcccg
cggacactgaatatggcgatgagcggtatgcgcgatttgtcgattattgctaccccgcca
gcacgccgtctggcggtgaaaacctttgttcgcgaatatgacagtttggtgattcgtgaa
gcgattctgcgtgaaattctgcgtggcgggcaggtttactacctgtacaacgacgtggag
aacatcgaaaaagccacccagcgactggcggaattagtgccagaggcgcggatcgctatt
ggtcatggtcagatgcgtgagcgcgatctggagcgggtgatgaacgatttccatcatcag
cgctttaacgtactggtctgcacgacgattatcgaaaccggcatcgacattcctagcgcg
aataccattatcatcgaacgggccgatcatttcggtctggcgcagctacaccagttgcgg
ggccgcgtcgggcgatcgcatcatcaagcttatgcctacctgctcacgccaaacccgaaa
gcgatgaccaccgatgccaaaaaacggctggaggccatcgcctcactggaagatctgggt
gcgggcttcgccttggcaacccatgatctggagattcgtggggctggtgagttgttgggc
gaggaccaaagcggccagttgaccaccattggcttctcgctctacatggagctgttggaa
aacgcggttgatgcgctgaaagagggccgtgaaccctcactggaagatttgaccaataat
cagactgaaattgagatgcgtatgccagtgttgctacctgacgatttcattccagatgtg
aatatccgactttcgttctataagcgaatcgccagcgcgcgcaatgaaaccgaacttgat
gagttaaaagttgagctaatcgatcgctttggcaaactgcccgatgccgcccgctacctg
ttgcaaaccgccgaattacgtcagttggcgcagacgttgggaattaagcgcattgaaggc
aatgagcgcggaggttttgtcgaatttagcgagaagaacaaggtcgatccggtctatctg
attggtctgctacaacgccagccaaagatctatcgactggaaggaccaaccaagctgaag
tttatgcaggatttgaccgaccgaacgcaacgactgaaatttatcagtgaactgctggcg
gcatttgcgcagcaccgcgtggcttaa
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integrated database retrieval system
