Yersinia pestis Pestoides F (biovar Antiqua): YPDSF_2532
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Entry
YPDSF_2532 CDS
T00505
Name
(GenBank) choline dehydrogenase
KO
K00108
choline dehydrogenase [EC:
1.1.99.1
]
Organism
ypp
Yersinia pestis Pestoides F (biovar Antiqua)
Pathway
ypp00260
Glycine, serine and threonine metabolism
ypp01100
Metabolic pathways
Module
ypp_M00555
Betaine biosynthesis, choline => betaine
Brite
KEGG Orthology (KO) [BR:
ypp00001
]
09100 Metabolism
09105 Amino acid metabolism
00260 Glycine, serine and threonine metabolism
YPDSF_2532
Enzymes [BR:
ypp01000
]
1. Oxidoreductases
1.1 Acting on the CH-OH group of donors
1.1.99 With unknown physiological acceptors
1.1.99.1 choline dehydrogenase
YPDSF_2532
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Motif
Pfam:
GMC_oxred_N
GMC_oxred_C
DAO
Lycopene_cycl
NAD_binding_8
FAD_binding_2
Pyr_redox_2
Thi4
ApbA
Motif
Other DBs
NCBI-ProteinID:
ABP40904
UniProt:
A4TNP2
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All DBs
Position
2881022..2882725
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AA seq
567 aa
AA seq
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MEYDYIIIGAGSAGNVLAARLTEDADVTVLLLEAGGPDYRLDFRTQMPAALAFPLQGKRY
NWAYETDPEPHMNNRRMECGRGKGLGGSSLINGMCYIRGNAMDFDHWASLSGLEDWSYLD
CLPYFRKAETRDIGPNDFHGGEGPVSVTTPKIGNNPLFHAMVAAGVQAGYPRTDDLNGYQ
QEGFGPMDRTVTPKGRRASTARGYLDQARPRNNLTIITHALTDRILFEGKRATGVRYLKG
DAGTGQTAYARREVLLCGGAIASPQILQRSGIGPAELLQRLDIPLVQALPGVGENLQDHL
EMYLQYSCKQPVSLYPALLWFNQPKIGIEWLFNGTGVGASNQFEAGGFIRSRDAFTWPNI
QYHFLPVAINYNGSNAVKEHGFQAHVGSMRSPSRGRIQVKSKDPRQHPSILFNYMSSEQD
WHEFRDAIRITREIIAQPALDPYRGREISPGANVQNDDELDAFIREHAETAYHPSCSCKM
GDDKMAVVDGQGRVHGVQGLRVVDASIMSQIITGNLNATTIMIAEKIADRIRGCQPLAKS
NAAYFIAGDTPARTSPVRHSLPVTSYP
NT seq
1704 nt
NT seq
+upstream
nt +downstream
nt
atggaatacgattacatcatcattggtgccggttctgcaggcaacgtgctggcagcccgt
ttaacagaagatgcggatgtcaccgtactcttgctcgaagcgggtggaccagactatcgg
ctggattttcggacacaaatgcctgcggcgctcgcctttccacttcagggtaaacgttat
aattgggcttatgaaaccgatccggagccgcatatgaacaaccgccgcatggagtgcgga
cgcggtaaaggtttgggcggttcatcattaattaatggcatgtgttacatccgcggcaac
gccatggattttgaccactgggccagtttatcgggcctggaggactggagttatcttgat
tgcctgccgtactttcgcaaggcagaaacacgcgacatcggcccaaatgatttccacggt
ggtgaaggccctgtcagcgtgaccacacctaaaatcggcaacaacccgttatttcatgca
atggtcgctgcgggtgtgcaggccggttatccgcgtactgatgacctgaatggctatcag
caggagggtttcggcccgatggatcgtactgtgacgccgaagggtcgtcgtgccagtact
gcgcgcggctatcttgatcaggcgcgcccacgtaataacctaaccattattacgcacgcc
ctgacggaccggatcctatttgaagggaaacgagccactggtgtccgctacctcaaaggt
gatgctggcaccggccaaaccgcctatgctcgccgtgaagttttattgtgtgggggtgct
atcgcgtcaccacaaattttacagcgctcggggattggccctgcggaattactgcaacgc
ctggatattccgttggtgcaggcgttgcccggcgtcggggagaatttgcaagatcacctt
gagatgtatctgcaatatagctgtaaacagccggtgtcactttaccctgctctgctgtgg
tttaatcagcccaaaatcggtatcgaatggttattcaacggtacgggcgtgggtgccagc
aatcaattcgaagctggtgggtttatccgcagtcgcgatgcatttacctggccgaatatt
cagtaccacttcctgcccgtcgccattaattacaatgggagcaacgccgtaaaagagcat
ggttttcaggcgcatgttggctcgatgcgttcaccaagccgtggccgcattcaggtaaaa
tcgaaagatccgcgccagcatccaagtatcttgttcaattacatgtcgagcgaacaagat
tggcatgagttccgcgatgctatccgcatcacccgcgagattatcgcgcagcctgcactg
gatccatatcgtggtcgagagataagccctggggccaatgttcaaaacgatgacgaactg
gatgccttcatccgcgaacatgccgagacggcatatcatccttcgtgctcatgtaaaatg
ggtgacgacaagatggcggtggttgatgggcaaggccgggtgcacggtgtgcaagggcta
cgggtggtcgatgcgtctatcatgtcgcaaatcattaccggcaacctcaatgccacgacc
atcatgattgcagagaaaatagcggatcgtattcgtggctgccaaccactggcaaaaagc
aacgccgcgtattttatcgccggagatactcctgcccgtacatctcccgtaaggcattca
ttacccgtaacatcatatccgtaa
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