Yersinia pestis A1122: A1122_07125
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Entry
A1122_07125 CDS
T01831
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
ypt
Yersinia pestis A1122
Pathway
ypt03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
ypt00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
A1122_07125
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ypt03021
]
A1122_07125
03400 DNA repair and recombination proteins [BR:
ypt03400
]
A1122_07125
Enzymes [BR:
ypt01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
A1122_07125
Transcription machinery [BR:
ypt03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
A1122_07125
DNA repair and recombination proteins [BR:
ypt03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
A1122_07125
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-ProteinID:
AEL72080
LinkDB
All DBs
Position
1560368..1564588
Genome browser
AA seq
1406 aa
AA seq
DB search
MKDLLKFLKAQTKTEEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCAR
IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSL
PSRIGLLLDMPLRDIERVLYFESYVVIEGGMTNLERRQILTEEQYLDALEEFGDEFDAKM
GAEAIQALLKNMDLEAECEILREELNETNSETKRKKLTKRIKLLEAFVQSGNKPEWMILT
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQ
EAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPY
LRLHQCGLPKKMALELFKPFIYGKLELRGLATTIKAAKKMVEREEAVVWDILDEVIREHP
VLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA
RALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTRDCVNAKGEGMVLTGPKEAERIYRAG
LASLHARVKVRITEEIRNTEGESITRTSIIDTTVGRAILWMIVPQGLPYSIVNQPLGKKA
ISKMLNTCYRILGLKPTVIFADQIMYTGFAYAARSGASVGIDDMVIPEAKAGIIEEAETE
VAEIQEQFQSGLVTAGERYNKVIDIWAAANERVAKAMMDNLSVEDVVNRDGVVEQQVSFN
SIFMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHNGIVMTPVIEGGDVKEPLRDRVL
GRVTAEEVIKPGSADILVPRNTLLDEKWCDLLEENSVDSVKVRSVVSCETDFGVCANCYG
RDLARGHIINKGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAESSIQVKNKGSLKL
SNVKFVTNAAGKLVITSRNTELKLIDEFGRTKESYKVPYGAVMAKGDGAEVQGGETVANW
DPHIMPVVTEVSGFIRFADMVDGQTITRQTDELTGLSSLVVLDSAERTGSGKDLRPALKI
VDAKGNDVLIPGTDMPAQYFLPGKAIVQLEDGIQIGAGDTLARIPQESSGTKDITGGLPR
VADLFEARRPKEPAILAEISGIISFGKETKGKRRLVISPLDGSDAYEEMIPKWRQLNVFE
GEVVERGDVVSDGPESPHDILRLRGVHAVTRYITNEVQEVYRLQGVKINDKHIEVIVRQM
LRKGTIVDAGSTDFLEGEQAEMSRVKIANRKLAAEGKIEATFTRDLLGITKASLATESFI
SAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYAYHQDRMRRKAQGEAPV
VPQVSADEATANLAELLNAGFGNNKG
NT seq
4221 nt
NT seq
+upstream
nt +downstream
nt
gtgaaagacttattaaagtttctgaaagcgcaaactaagaccgaagagtttgatgcgatc
aaaattgctctggcatcgccagacatgatccgttcatggtcattcggtgaagttaaaaag
ccggaaaccattaactaccgtacgttcaaaccagaacgtgacggccttttctgcgcccgt
atctttggcccagtaaaagattacgaatgcctgtgcggtaagtacaagcgtttaaaacac
cgtggtgttatttgtgagaaatgcggcgttgaagtgactcaaactaaagtgcgccgtgag
cgtatgggtcacatcgaactggcttctccaactgcgcacatctggttcctgaaatcgctg
ccatctcgtatcggtttgctgctggatatgccattacgtgacatcgaacgtgtactgtac
ttcgaatcctatgtggttattgaaggcggtatgaccaacctggaacgtcgccagattctg
actgaagagcagtatctggatgcgttggaagagtttggtgatgagttcgacgcgaaaatg
ggcgccgaggctattcaggccctgttgaaaaacatggatctggaagctgagtgcgagatc
ctgcgtgaagaattgaacgaaacaaattctgaaaccaagcgtaagaaactgaccaagcgt
atcaagttgctggaagcgttcgtacagtctggcaacaagccagagtggatgatcctgacc
gtgctgcctgtgttgccgccagatctgcgtccattggttccgttggatggtggtcgcttt
gcgacttccgatctgaacgatttgtatcgtcgcgtgatcaaccgtaacaaccgtctgaaa
cgcctgctggacttggcggcaccggacatcatcgtacgtaacgaaaagcgtatgctgcaa
gaagcagtagatgcattgctggataacggccgtcgcggtcgtgcgattaccggctctaac
aagcgtccgttgaagtcactggctgacatgatcaaaggtaagcaaggtcgtttccgtcag
aacttgctgggtaaacgtgttgactactcaggtcgttcggttatcaccgttggtccatac
ctgcgtctgcatcagtgcggtctgcctaagaaaatggctcttgagctgtttaaaccgttc
atctacggcaagctggaattgcgtggtcttgctaccaccatcaaagccgccaagaagatg
gttgagcgtgaagaagcggttgtttgggatatcctggatgaagttatccgcgaacaccca
gtgctgctgaaccgtgcaccaacccttcaccgtttgggtatccaggcgtttgaaccggtt
ctgatcgaaggtaaggcaatccagttgcacccattggtttgtgcggcatataacgccgac
ttcgatggtgaccaaatggctgtccacgtaccgctgacactggaagctcagttagaagcg
cgtgcgttaatgatgtctaccaacaacatcctgtcacccgcgaacggcgagccaatcatc
gttccttctcaggacgttgtattgggtctgtactacatgacccgcgactgtgttaacgcc
aaaggcgaaggcatggttctgactggcccgaaagaagctgagcgtatttatcgcgctggc
ttggcatctctgcatgcccgcgtaaaagtacgtattaccgaagaaattcgtaataccgaa
ggcgaaagcattacgcgtaccagcattatcgatacgactgtaggccgtgctattttgtgg
atgatcgtcccgcaaggcctgccttactctatcgttaaccagccgctgggtaaaaaagct
atctctaagatgctgaacacgtgttaccgcatcttgggcttgaagccaacggttatcttt
gctgaccagatcatgtacaccggttttgcttacgcagcacgctcaggcgcctctgtaggt
atcgatgacatggttatcccagaagcgaaagcggggatcatcgaagaagctgaaactgaa
gttgctgagatccaagaacagttccaatctggtctggtcacggcaggcgaacgttataac
aaagtgatcgatatctgggctgcggctaacgaacgtgttgctaaagcgatgatggataac
ttgtcggttgaggatgttgtcaaccgtgatggcgttgttgaacagcaagtttcattcaac
agcatcttcatgatggccgactccggtgcgcgtggttctgccgcacagattcgtcagctg
gcaggtatgcgtggtctgatggctaagccagacggctcgatcattgaaacgccaatcacc
gcgaacttccgtgaaggtttgaacgtacttcagtacttcatctcaacccacggtgcgcgt
aaaggtttggcggataccgcattgaaaactgcgaactccggttacctgacccgtcgttta
gttgacgtggcacaggatctggtggtgactgaggatgattgtggtacccataacggtatc
gtgatgaccccggttatcgaaggtggtgatgttaaagagccactgcgtgatcgcgtactg
ggtcgtgtgactgcagaagaagttatcaagccaggttcggctgatattctggttccgcgt
aacaccctgctggacgaaaaatggtgtgatctgttagaagaaaactccgtcgacagcgtt
aaagttcgctccgtagtaagctgtgaaactgatttcggtgtgtgtgctaactgctatggt
cgcgacctggcacgtggccacatcatcaacaaaggtgaagcggttggtgttattgcagca
cagtccatcggtgagccgggtactcagcttacgatgcgtacgttccacatcggtggtgcg
gcatctcgtgcggcagcagaatccagcatccaggttaagaacaaaggcagcttgaaactg
agcaacgtcaagttcgtgaccaatgcggctggcaagctggttattacgtctcgtaatacc
gagctgaagctgatcgacgaattcggtcgtaccaaagaaagctataaagtgccttacggt
gcggtaatggctaaaggcgatggcgcagaagttcagggcggcgaaaccgttgctaactgg
gatccgcacatcatgccagtggtcaccgaagtgagcggcttcattcgcttcgccgacatg
gttgatggccagaccattactcgccagaccgacgaactgactggtttgtcttctctggtc
gttctggacagtgcagagcgtacgggtagcggtaaagacctgcgtccagcactgaaaatc
gttgatgccaaaggcaatgacgtattgatcccaggtactgatatgcctgctcaatacttc
ctgccaggtaaagcgattgtacagctggaagacggtattcagatcggtgcgggtgatacc
ttggcgcgtattcctcaggaatcaagcggtaccaaggatattaccggtggtctgccacgt
gttgctgacttgttcgaagcacgtcgtccgaaagagcctgcaatcctggctgaaatcagc
gggatcatctcgttcggtaaagagaccaaaggcaagcgtcgtctggtgatctcaccgttg
gatggtagcgatgcatacgaagagatgattccgaaatggcgtcagcttaacgtgttcgaa
ggtgaagttgtggaacgcggtgacgtggtttccgatggcccagaatctccacatgacatt
ctgcgtctgcgtggcgttcacgcggttacccgctacatcaccaacgaagtgcaggaagtt
taccgtctgcaaggcgttaagattaacgataaacacattgaagttatcgttcgtcagatg
ctgcgtaaaggcactatcgttgatgcaggtagcaccgacttcctggaaggcgagcaggca
gaaatgtcccgcgttaaaatcgctaaccgtaagctggcagcagaaggcaaaattgaggct
acgttcactcgtgacctgctgggtatcaccaaggcatccttggcgaccgagtccttcatc
tctgcggcttcgttccaggaaaccacgcgcgttcttactgaagcggcagttgccggtaaa
cgtgatgaattgcgtggcctgaaagaaaacgtaatcgtgggccgtctgatcccagccggt
accggttatgcttatcatcaggaccgtatgcgccgtaaagcacagggtgaagcgcctgtt
gttccacaagtcagcgcggatgaagcgactgcaaacttggccgaattgcttaatgccggt
tttggtaacaacaaaggctaa
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