Yokenella regensburgei: HEC60_01000
Help
Entry
HEC60_01000 CDS
T06519
Symbol
uvrB
Name
(GenBank) excinuclease ABC subunit B
KO
K03702
excinuclease ABC subunit B
Organism
yre
Yokenella regensburgei
Pathway
yre03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
yre00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
HEC60_01000 (uvrB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
yre03400
]
HEC60_01000 (uvrB)
DNA repair and recombination proteins [BR:
yre03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
HEC60_01000 (uvrB)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
HEC60_01000 (uvrB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrB_inter
UvrB
Helicase_C
ResIII
UVR
DEAD
UB2H
AAA_30
SBDS_domain_II
AAA_22
Motif
Other DBs
NCBI-ProteinID:
QIU88037
UniProt:
A0A6H0K5V7
LinkDB
All DBs
Position
200340..202352
Genome browser
AA seq
670 aa
AA seq
DB search
MSKPFKLHSAFRPSGDQPAAIAKLKEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPT
MVLAPNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIE
QMRLSATKALLERRDVIVVASVSAIYGLGDPDLYLKMMLHLTVGMIVDQRSILRRLTELQ
YTRNDQAFQRGTFRVRGEVIDVFPAESDDLALRIELFDDEVERLSLFDPLTGHLESGVQR
FTIYPKTHYVTPRERIIQAMEEIKVELADRRKVLLANNKLLEEQRLSQRTQFDLEMMNEL
GYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVIDESHVTIPQIGGMYRGDRARKET
LVEYGFRLPSALDNRPLKFEEFEALAPQSIYVSATPGNYELDKSAGDVVDQVVRPTGLLD
PVIEVRPVATQVDDLLSEIRQRALINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDI
DTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIG
RAARNINGKAILYGDKITPSMAKAIGETERRREKQQRYNEENGIVPQGLTKKVVDILALG
AGLAKTKAKGRGKARIVEEDTVVLTPKALQQKIHELEGQMMQHAQNLEFEEAAQIRDQLH
QLRDLFIAAS
NT seq
2013 nt
NT seq
+upstream
nt +downstream
nt
atgtctaaaccgttcaaacttcattccgcgtttcgcccttcaggcgatcagcctgcggcc
atcgccaaactgaaagagggtctggaggacggcctggcgcaccagacgctgctcggcgta
acgggctcaggtaaaacctttaccatcgctaacgtcattgccgatctgcagcgtcctact
atggtactggcgccgaacaaaacgctggcggcccagctctacggcgagatgaaggagttc
ttcccggaaaacgcggtggagtatttcgtctcgtactacgattactaccagccggaagcc
tacgtaccgagctcggataccttcatcgagaaagacgcctcggtgaacgagcatatcgaa
cagatgcgactctctgcgaccaaggcactgttagagcgccgtgatgtgatcgtggtggcg
tcggtttcagccatctacggccttggcgatccggatctgtatctgaaaatgatgctgcac
ctgacggtcgggatgattgtcgatcagcgcagtatcctgcgacgtctcactgagctgcag
tacacccgtaacgatcaggcatttcagcgcgggaccttccgcgtccgcggcgaagtgatc
gatgtcttcccggcggagtccgacgatctggcgctacgcatcgagctttttgacgacgaa
gtcgagcggctgtcgctgtttgacccgctcaccggccatctggagtccggcgttcagcgc
ttcaccatctacccgaaaacgcactacgtgacgccacgcgagcgtattattcaggcgatg
gaagagatcaaagttgagctggcagaccgccgcaaggtgctgcttgccaacaacaagctg
ctggaagagcagcgcttgagccagcgtactcagttcgatctcgagatgatgaacgagctc
ggatactgctccggtatcgaaaactattcgcgctttctctccggccgtggtcccggcgag
ccgccgccgacgctgtttgattaccttccggccgatggtctgctggtcatcgacgaatcc
cacgtgactatcccgcagattggcggcatgtaccgtggcgaccgggcgcgtaaagagacg
ctggtggagtacggtttccgcctgccttccgcgctcgataaccgtccgctgaagtttgaa
gagttcgaagcgctggcgccgcagtcgatttatgtttcggcaacgccgggtaactatgaa
ctggataaatctgcgggtgacgtggttgaccaggtcgtgcgtccaaccgggcttttagat
ccggttatcgaagtgcgcccggtggcgacccaggttgacgatctgctgtcagaaattcgc
caacgtgcgcttatcaacgaacgcgtactggtgacgacactgaccaaacggatggcggaa
gacttaaccgagtatcttgaagaacacggcgagcgggtgcgctatctgcactcggatatc
gacaccgtcgagcgtatggaaatcatccgtgacctgcgtctgggcgagtttgacgtcctg
gttgggatcaacctgctgcgagagggtctggatatgcctgaggtctcgctggtggcgatc
cttgatgccgataaagagggtttcctgcgttctgaacgttccttgatccagaccattggt
cgtgcggcgcgtaacatcaacggtaaagccattctgtacggcgataaaatcactccgtca
atggctaaggcgattggcgaaaccgaacgtcgtcgcgagaaacagcagcgctataacgaa
gagaacggtattgtgccgcagggcctcaccaagaaggtggtcgatattctggcactgggt
gcgggtctggcgaaaaccaaagcgaaagggcgtggtaaagcgcggattgtagaagaagat
accgtcgtgttaacgccgaaagcgctgcagcagaaaatccacgagctggaagggcaaatg
atgcagcatgcacagaatctcgaatttgaagaggcggcgcagatccgtgaccagctccat
cagcttcgcgatctgtttatcgccgcatcgtaa
DBGET
integrated database retrieval system
