Yersinia rohdei: CH64_2885
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Entry
CH64_2885 CDS
T03610
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase, beta' subunit
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
yro
Yersinia rohdei
Pathway
yro03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
yro00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
CH64_2885 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
yro03021
]
CH64_2885 (rpoC)
03400 DNA repair and recombination proteins [BR:
yro03400
]
CH64_2885 (rpoC)
Enzymes [BR:
yro01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
CH64_2885 (rpoC)
Transcription machinery [BR:
yro03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
CH64_2885 (rpoC)
DNA repair and recombination proteins [BR:
yro03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
CH64_2885 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-ProteinID:
AJJ11420
LinkDB
All DBs
Position
3214955..3219157
Genome browser
AA seq
1400 aa
AA seq
DB search
MKDLLKFLKAQTKTEEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCAR
IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSL
PSRIGLLLDMPLRDIERVLYFESYVVIEGGMTNLERRQILTEEQYLDALEEFGDEFDAKM
GAEAIQALLKNMDLEAECEILREELNETNSETKRIKLLEAFVQSGNKPEWMILTVLPVLP
PDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQEAVDAL
LDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPYLRLHQC
GLPKKMALELFKPFIYGKLELRGLATTIKAAKKMVEREEAVVWDILDEVIREHPVLLNRA
PTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEARALMMS
TNNILSPANGEPIIVPSQDVVLGLYYMTRDCVNAKGEGMVLTGPKEAERIYRSGHASLHA
RVKVRITEEIRNIEGESITRTSLIDTTVGRAILWMIVPKGLPYSIVNQPLGKKAISKMLN
TCYRILGLKPTVIFADQIMYTGFAYAARSGASVGIDDMVIPDAKAGIIEEAETEVAEIQE
QFQSGLVTAGERYNKVIDIWAAANERVAKAMMDNLSVEDVINSKGEVEQQVSFNSIFMMA
DSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGARKGLADT
ALKTANSGYLTRRLVDVAQDLVVTEDDCGTHNGIVMTPVIEGGDVKEPLRDRVLGRVTAE
EVIKPGTADILVPRNTLLDEKWCDLLEENSVDSVKVRSVVSCETDFGVCANCYGRDLARG
HIINKGEAVGVIAAQSIGEPGTQLTMCTFHIGGAASRAAAESSIQVKNKGTLKLSNVKFV
TNAAGKLVITSRNTELKLIDEFGRTKESYKVPYGAVMAKGDGAEVQGGETVANWDPHIMP
VVTEVSGFIRFADMVDGQTITRQTDELTGLSSLVVLDSAERTGSGKDLRPALKIVDANGN
DVLIPGTDMPAQYFLPGKAIVQLEDGIQIGAGDTLARIPQESSGTKDITGGLPRVADLFE
ARRPKEPAILAEISGIISFGKETKGKRRLVISPLDGSDAYEEMIPKWRQLNVFEGEIVER
GDVVSDGPESPHDILRLRGVHAVTRYITNEVQEVYRLQGVKINDKHIEVIVRQMLRKGTI
VDAGSTDFLEGEQAEMSRVKIANRKLAAEGKIEATFTRDLLGITKASLATESFISAASFQ
ETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYAYHQDRMRRKALGEAPVVPQVSA
DEATANLAELLNAGFGNSKD
NT seq
4203 nt
NT seq
+upstream
nt +downstream
nt
gtgaaagacttattaaagtttctgaaagcgcaaactaagaccgaagagtttgatgcgatc
aaaattgctctggcctcgccagacatgatccgttcttggtcgttcggcgaagttaaaaag
ccggaaaccattaactaccgtacgttcaaaccagaacgtgacggccttttctgcgcccgt
atctttggcccagtaaaagattacgaatgcctgtgcggtaagtacaagcgtttgaaacac
cgcggtgttatttgtgagaaatgcggcgttgaagtgactcaaaccaaagtacgccgtgag
cgtatgggtcacatcgaactggcttctccgactgcgcacatctggttcctgaaatccttg
ccttcgcgcatcggtttgttgctggatatgccattacgtgacatcgaacgtgtactgtac
ttcgaatcttatgttgttatcgaaggcggcatgaccaacctggaacgtcgtcagatcctg
actgaagagcagtatctggacgcgttagaagagtttggtgatgagttcgacgcgaaaatg
ggcgccgaagctattcaggccctgttgaaaaacatggatctggaagctgagtgcgagatc
ctgcgcgaagaattgaacgaaacaaattctgaaaccaagcgtatcaagctgctggaagcg
ttcgtacagtctggcaacaagccagagtggatgatcctgaccgtgttgcctgtgttgccg
ccagatctgcgtccattggttccattggatggcggtcgttttgcgacttctgacctgaac
gatttgtatcgtcgcgtgatcaaccgtaacaaccgtctgaagcgcctgctggacttggct
gctcctgacatcatcgtgcgcaacgaaaagcgtatgctgcaagaagcagtagacgcattg
ctggataacggccgtcgcggtcgtgcgattaccggctctaacaagcgtccgttgaagtca
ctggctgacatgatcaaaggtaagcaaggtcgtttccgtcagaacttgctgggtaaacgt
gttgactactcaggccgttcggttatcaccgttgggccatacctgcgtctgcatcagtgc
ggtctgccgaagaaaatggctcttgagctgttcaaaccgttcatctacggcaagctggaa
ctgcgtggtcttgctaccaccatcaaagctgccaagaagatggttgagcgcgaagaagcc
gttgtttgggatatcttggatgaagttatccgcgaacacccagtactgctgaaccgtgca
ccaacccttcaccgtttgggtatccaggcgtttgaaccggttctgattgaaggtaaagca
atccagctgcatccgctggtttgtgcggcatataacgccgacttcgatggtgaccaaatg
gcagtccacgtaccgctgacactggaagctcagttagaagcgcgtgcgttgatgatgtct
accaacaacatcctgtcacctgcgaacggcgagccaatcatcgttccttctcaggacgtt
gtattgggtctgtattacatgacccgcgactgtgttaacgccaaaggcgaaggcatggta
ctgactggcccgaaagaagccgaacgtatttatcgttctggccatgcgtcactgcatgcg
cgggtaaaagtccgtattactgaagaaattcgtaatatcgaaggcgaaagcattacgcgt
accagcctcatcgatacgactgtaggccgtgctattttgtggatgatcgtcccgaaaggc
ctgccttactctatcgtgaaccagccgctgggcaagaaagctatctccaagatgctgaac
acttgttaccgcatcctgggcttgaagccaacagttatctttgctgaccagatcatgtac
accggttttgcttacgcagcccgctcaggcgcctctgtaggtatcgatgacatggttatc
ccagatgcgaaagcagggatcatcgaagaagctgaaactgaagttgccgagatccaggaa
cagttccaatctggtctggtaaccgcaggcgaacgttataacaaagtgatcgatatctgg
gccgcggccaacgaacgtgttgccaaggcgatgatggataacttgtccgttgaagacgtc
atcaacagtaaaggtgaagtggagcaacaagtttccttcaacagcatctttatgatggcc
gactccggtgcgcgtggttctgctgcacagattcgtcagctggcaggtatgcgtggtctg
atggctaagccagatggctcgatcattgaaacgccaatcactgcgaacttccgtgaaggt
ttgaacgtacttcagtacttcatctcaacccacggtgctcgtaaaggtttggcggatacc
gcattgaaaactgcgaactccggttacctgacccgtcgtttagttgacgtggcacaggat
ctggtggtgactgaggacgattgtggtacccataacggtatcgtgatgaccccggttatc
gaaggtggtgatgttaaagagccactgcgtgatcgcgtactgggtcgtgtgaccgcagaa
gaagttatcaagccgggtacggctgatattctggttccgcgtaacaccctgctggacgaa
aaatggtgtgatctgttagaagaaaactccgtcgacagcgttaaagttcgctccgtagta
agctgtgaaactgacttcggtgtgtgtgctaactgctatggtcgcgacctggcacgtggc
cacatcatcaacaaaggtgaagcggttggtgttattgcagcacagtccatcggtgagccg
ggtacccagcttacgatgtgtacgttccacatcggtggtgcggcatctcgtgcggcagca
gaatccagcattcaggttaagaacaaaggtaccctgaagctgagcaacgtcaaattcgtt
actaacgcagcaggtaagctggttattacttctcgtaataccgagctgaaactgattgac
gaattcggtcgtactaaagaaagctacaaagtgccttacggtgcggtaatggctaaaggc
gatggcgcggaagtacagggcggcgaaaccgttgctaactgggatccgcacatcatgcca
gttgtgaccgaagtgagcggtttcatccgctttgcggacatggttgacggccaaaccatt
acccgccagaccgacgaactgactggtttgtcttctctggtagtactggactcagcagag
cgtaccggtagcggtaaagacctgcgtccggcactgaaaatcgttgatgccaacggtaat
gatgtattgatcccaggtactgatatgcctgctcaatacttcctgccaggtaaagcgatt
gttcagctggaagacggcattcagatcggcgcgggtgataccttggcgcgtattccgcaa
gaatcaagcggtaccaaggatattaccggtggtctgccacgtgttgctgacttgttcgaa
gcacgtcgtccgaaagagcctgcaatcttggctgaaatcagcgggattatctcgttcggt
aaagagaccaaaggcaaacgtcgtctggttatctcaccgttagatggtagcgatgcatac
gaagagatgattcctaaatggcgtcagctcaacgtgttcgaaggtgaaattgtagaacgc
ggtgacgtggtttccgacggcccagaatctccacacgatattctgcgtctacgtggcgtt
cacgccgtgacccgttacatcaccaacgaagtgcaggaagtttaccgtctgcaaggcgtt
aagattaacgataaacacattgaagttatcgttcgtcagatgttgcgtaaaggcaccatc
gttgatgcaggtagcaccgacttcctggaaggcgagcaggcagaaatgtctcgcgttaaa
atcgctaaccgtaagctggcagctgaaggcaaaatcgaggccacgttcacacgtgacctg
ctgggtatcaccaaggcatccttggcgaccgagtccttcatctctgcggcttcgttccag
gaaaccacgcgcgttcttactgaagcggctgttgccggtaaacgtgatgaactgcgtggc
ctgaaagaaaacgtaatcgtgggccgtctgatcccagccggtaccggttatgcttatcat
caggatcgtatgcgccgtaaagctctgggtgaagcaccagtggttccgcaagttagcgcg
gacgaagcaactgctaacctggctgaattgctcaacgccggttttggtaacagcaaagat
taa
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