Yersinia ruckeri YRB: BD65_1056
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Entry
BD65_1056 CDS
T03611
Name
(GenBank) beta-eliminating lyase family protein
KO
K00600
glycine hydroxymethyltransferase [EC:
2.1.2.1
]
Organism
yru
Yersinia ruckeri YRB
Pathway
yru00260
Glycine, serine and threonine metabolism
yru00460
Cyanoamino acid metabolism
yru00630
Glyoxylate and dicarboxylate metabolism
yru00670
One carbon pool by folate
yru00680
Methane metabolism
yru01100
Metabolic pathways
yru01110
Biosynthesis of secondary metabolites
yru01120
Microbial metabolism in diverse environments
yru01200
Carbon metabolism
yru01230
Biosynthesis of amino acids
yru01240
Biosynthesis of cofactors
Module
yru_M00140
C1-unit interconversion, prokaryotes
Brite
KEGG Orthology (KO) [BR:
yru00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00630 Glyoxylate and dicarboxylate metabolism
BD65_1056
09102 Energy metabolism
00680 Methane metabolism
BD65_1056
09105 Amino acid metabolism
00260 Glycine, serine and threonine metabolism
BD65_1056
09106 Metabolism of other amino acids
00460 Cyanoamino acid metabolism
BD65_1056
09108 Metabolism of cofactors and vitamins
00670 One carbon pool by folate
BD65_1056
Enzymes [BR:
yru01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.2 Hydroxymethyl-, formyl- and related transferases
2.1.2.1 glycine hydroxymethyltransferase
BD65_1056
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Gene cluster
GFIT
Motif
Pfam:
SHMT
Aminotran_1_2
Beta_elim_lyase
OKR_DC_1
Motif
Other DBs
NCBI-ProteinID:
AJI96413
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Position
complement(1157369..1158622)
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AA seq
417 aa
AA seq
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MLKREMNIADYDADLWRAMEQEVVRQEEHIELIASENYTSPRVMQAQGSQLTNKYAEGYP
GKRYYGGCEYVDVVEQLAIDRAKELFGADYANVQPHSGSQANVAVYSALLKPGDTVLGMN
LAHGGHLTHGSPVNFSGKLYNIVPYGIDESGKIDYDDMARQAELHKPKMIIGGFSAYSGI
VDWAKMREIADSIGAWLFVDMAHVAGLVAADVYPNPVPHAHIVTTTTHKTLAGPRGGLIL
AKGGDEELYKKLNSSVFPANQGGPLMHVIAGKAVALKEAMEPEFKIYQQQVAKNAKAMVS
VFLARGYKVVSGGTENHLFLLDLVDKDITGKDADAALGRANITVNKNSVPNDPKSPFVTS
GVRIGSPAITRRGFKEAESIELAGWMCDVLDNINDEATIERIKQKVLEICACFPVYA
NT seq
1254 nt
NT seq
+upstream
nt +downstream
nt
atgttaaagcgtgaaatgaacattgccgattatgatgccgatttatggcgtgcaatggag
caagaagtggtgcgccaggaagagcacatcgaactgattgcgtctgagaactataccagc
ccgcgtgttatgcaggcgcaaggttctcagttgacgaacaaatatgctgaaggttatccg
ggcaagcgttactacggtggctgtgagtatgttgatgtggttgagcaattggccatcgac
cgtgcgaaagaactatttggtgctgattatgccaacgtgcagccgcactccggttcacag
gctaacgtggccgtttattccgcattgttgaagccgggcgacaccgtattgggcatgaat
ctggcacatggcggccatttgacgcacggctctccggtaaacttctccggtaaactgtat
aacatcgtaccttacggtattgatgagtctggcaagatcgattatgacgatatggcgcgt
caggcagaactgcataaaccaaaaatgatcatcggtggcttctcggcctattccggtatc
gttgactgggcaaaaatgcgtgaaatcgccgacagcatcggtgcatggttgtttgtcgat
atggcccacgtggccggtctggtcgctgcggatgtttatccgaaccccgttcctcacgca
catattgttaccaccacgactcacaaaacgctagctggtccacgcggtggtctgattttg
gcgaaaggtggcgacgaagagctgtataagaaactgaactcttctgtattcccggctaac
cagggtggcccactgatgcacgttatcgcgggtaaagcggtggcgttgaaagaagcgatg
gagcctgagttcaagatttaccagcagcaagtagccaaaaacgccaaagcaatggtgtcg
gtcttcttggcgcgtggttacaaagtggtgtccggcggtacggaaaaccacttgttcttg
ctggatctggtcgataaagacatcaccggtaaagatgcggatgcagccttgggtcgtgcc
aatatcaccgtgaataaaaacagcgtgcctaacgatcctaagagcccgtttgtgacttcc
ggtgtgcgtatcggttctccggctattacccgtcgtggtttcaaagaagcagaatccatc
gaactggctggctggatgtgtgatgtgttggataacatcaacgacgaagcgactatcgaa
cgtatcaaacagaaagttctggaaatttgcgcctgtttcccggtttacgcataa
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