Yersinia ruckeri YRB: BD65_1572
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Entry
BD65_1572 CDS
T03611
Symbol
uvrA
Name
(GenBank) excinuclease ABC subunit A
KO
K03701
excinuclease ABC subunit A
Organism
yru
Yersinia ruckeri YRB
Pathway
yru03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
yru00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
BD65_1572 (uvrA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
yru03400
]
BD65_1572 (uvrA)
DNA repair and recombination proteins [BR:
yru03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
BD65_1572 (uvrA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
BD65_1572 (uvrA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrA_inter
UvrA_DNA-bind
ABC_tran
SMC_N
AAA_16
AAA_29
AAA_22
nSTAND1
DnaJ_CXXCXGXG
RsgA_GTPase
AAA_25
nSTAND3
NACHT
T2SSE
AAA_23
Viral_helicase1
cobW
ScfRs
DUF1924
Motif
Other DBs
NCBI-ProteinID:
AJI96547
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All DBs
Position
1711184..1714018
Genome browser
AA seq
944 aa
AA seq
DB search
MDNIEVRGARTHNLKNINLIIPRDKLIVVTGLSGSGKSSLAFDTLYAEGQRRYVESLSAY
ARQFLSLMEKPDVDHIEGLSPAISIEQKSTSHNPRSTVGTITEIHDYLRLLFARVGEPRC
PDHDVPLAAQTVSQMVDNVMAQPEGRRLMLLAPVVQDRKGEHTKMLENLATQGYIRARID
GEVCDLSDPPKLELQKKHTIEVVVDRFKVREDLAQRLAESFETALELSGGTAVVADMDDP
KAEELLFSANFACPICGYSMSELEPRLFSFNNPAGACPTCDGLGVQQFFDPDRVLQNPEL
SLAGGAIRGWDRRNFYYFQMLRSLAEHYKFDIEAPFNTLGSETQKAVLYGSGKETIEFKY
INDRGDTTVRRHPFEGVLHNMERRYKETESSAVREELAKFISNRSCTSCHGTRLRKEARY
VFVENTTLPEISELSIGHALTFFQNMKLSGQRAQIAEKVLKEIGDRLKFLVNVGLNYLSL
SRSADTLSGGEAQRIRLASQIGAGLVGVMYVLDEPSIGLHQRDNERLLETLIHLRNLGNT
VIVVEHDEDAIRAADHVIDIGPGAGVHGGQVVAEGTVDDIMAAPDSLTGQFLSGKREIAI
PAQRVPGDPNKVLKLIGATGNNLKDVTLTLPIGLFTCITGVSGSGKSTLINDTLYSIAQR
QLNGATITEPAAYRDIQGLEHFDKVIDIDQSPIGRTPRSNPATYTGIFTPVRELFAGVPE
SRTRGYNPGRFSFNVKGGRCEACQGDGVIKVEMHFLPDIYVPCDQCKGKRYNRETLEVKY
KGKNIHEVLEMTIEEAREFFDAVPALARKLQTLIDVGLSYICLGQSATTLSGGEAQRVKL
SRELSKRGTGQTLYILDEPTTGLHFADIQQLLAVLHQLRDQGNTIVVIEHNLDVIKTADW
IVDLGPEGGSGGGEILVSGTPETVAECAASHTARFLKPLLARKS
NT seq
2835 nt
NT seq
+upstream
nt +downstream
nt
atggataatatcgaagttcggggcgctcgcacccataatctcaagaatatcaacctgatt
atcccgcgcgacaaactgattgttgtcaccggcctgtccggctctggtaaatcttcactg
gcttttgatactttatatgccgagggccagcgccgttatgttgagtctctttccgcctat
gcgcgccaatttctatcgttaatggaaaaaccggacgttgaccatatcgaaggtctgtca
ccagcgatttctattgagcaaaaatcaacctcccataacccgcgttctaccgtcggcacc
attaccgaaattcacgattatctacgtctgctgtttgcccgcgttggggaacctcgctgt
cccgatcacgatgtccctctggcagcacagaccgtcagccagatggttgataacgtgatg
gctcagccagaaggtcgccgcttgatgttgttggcaccggtggtacaagatcgtaaaggc
gaacacaccaaaatgctggaaaacctggcaactcagggttatatccgtgctcgcattgac
ggtgaagtctgcgatctctccgatccgcccaaactggaactacaaaagaagcacaccatt
gaagtcgtcgtggatcgctttaaagtgcgggaagatctggcgcagcgtctggctgaatct
tttgaaaccgcgctggagttatccggtggtaccgccgtggtcgctgatatggacgacccg
aaagctgaagagttgctgttctccgccaattttgcctgtccaatttgcggctacagtatg
agcgaactggaaccacgcctgttctcctttaacaacccagccggtgcctgcccgacctgt
gatgggctgggtgtacagcaattcttcgatccggatcgggtgctgcaaaaccccgagttg
tcgttagctggcggcgccatccgcggctgggatcgccgtaatttctattatttccagatg
ctacgttcgttggctgaacactataaattcgatatcgaagcaccgttcaacaccctgggt
agcgaaacgcaaaaagcggttttatacggctcgggtaaagaaaccatcgaatttaaatat
atcaatgaccgtggtgacaccacggtacgccgccatccgtttgaaggcgtactacacaat
atggagcggcgttataaggaaacagaatccagcgccgtacgtgaagagctggcgaaattt
atcagcaaccgttcctgcacctcctgccacgggacacgcctgcgcaaagaagcccgttat
gtgtttgtggaaaataccacgctgccggaaatttccgagttgagcatcggacacgctctg
accttcttccagaatatgaaactaagcggccaacgcgcccaaatagcagaaaaagtgctg
aaagaaatcggcgaccgactgaagtttttagtcaacgtaggcctgaattacctttctcta
tcgcgctccgcggatacactttccggcggcgaagcccagcgtattcgtctggccagccag
attggtgccggtctggtcggtgtgatgtatgtcttggatgaaccctcaatcggtttacat
cagcgggataacgagcgtttgttggaaaccctgattcacctgcgtaatctgggtaatacc
gtgattgtggttgagcatgatgaagatgccattcgggcggcagaccatgtcattgatatc
ggccccggagctggcgttcatggtggacaggtggttgccgaagggacagtcgatgacatt
atggccgcacctgactcactgactggccagttcctcagcgggaaacgggaaattgcgatt
cctgcccaacgggtacctggtgatccgaataaagtgctaaaactgatcggcgcaacaggc
aacaacctgaaagatgtcacactaacattaccgatcggtttatttacctgtattaccggc
gtgtccggttcaggtaaatcgacgctgattaatgacactttatattccattgctcagcgt
caactgaatggtgccaccattacggaacccgcagcgtaccgtgatattcagggactggaa
catttcgataaagtcatcgatatagaccagagtccgattggacgtacgccgcgttctaac
ccagcgacctataccggtatttttacgccagtccgtgagttatttgctggcgtgccagaa
tcacgcacccgcggatacaatccaggccgattcagctttaacgttaaaggcgggcgttgc
gaagcatgtcaaggcgacggcgtaatcaaggtagaaatgcatttcctgccagatatttac
gtcccttgtgatcagtgcaaaggcaaacgctataatcgtgaaacgctggaagtgaaatac
aaaggcaaaaatattcacgaagtactggaaatgacgattgaagaagcacgtgagttcttc
gatgcggtgccagcattggcgcggaaactgcaaaccttgattgacgtgggcttatcttat
atttgtctcggccaatccgcgacaacgctgtctggcggtgaagcccagcgagtgaaactg
tctcgcgagctgtccaaacgtggcaccggtcaaacactgtatattctggatgaacccacc
accggtctgcattttgccgatattcagcaattgttggcggtactgcatcagctacgggat
cagggcaacaccattgtcgtgattgagcataatctggacgtgattaaaaccgcggactgg
attgtcgatctcggcccagaaggcggtagtggcggtggcgagattttggtatcaggcacg
ccagaaaccgtcgccgagtgcgcggcgtcccacacagcgcgattcctgaaaccgctgctg
gcgcgcaagtcatag
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