Yersinia ruckeri YRB: BD65_391
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Entry
BD65_391 CDS
T03611
Symbol
nifJ
Name
(GenBank) ferredoxin (flavodoxin) oxidoreductase
KO
K03737
pyruvate-ferredoxin/flavodoxin oxidoreductase [EC:
1.2.7.1
1.2.7.-]
Organism
yru
Yersinia ruckeri YRB
Pathway
yru00010
Glycolysis / Gluconeogenesis
yru00020
Citrate cycle (TCA cycle)
yru00620
Pyruvate metabolism
yru00650
Butanoate metabolism
yru01100
Metabolic pathways
yru01110
Biosynthesis of secondary metabolites
yru01120
Microbial metabolism in diverse environments
yru01200
Carbon metabolism
yru01210
2-Oxocarboxylic acid metabolism
Module
yru_M00307
Pyruvate oxidation, pyruvate => acetyl-CoA
Brite
KEGG Orthology (KO) [BR:
yru00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00010 Glycolysis / Gluconeogenesis
BD65_391 (nifJ)
00020 Citrate cycle (TCA cycle)
BD65_391 (nifJ)
00620 Pyruvate metabolism
BD65_391 (nifJ)
00650 Butanoate metabolism
BD65_391 (nifJ)
Enzymes [BR:
yru01000
]
1. Oxidoreductases
1.2 Acting on the aldehyde or oxo group of donors
1.2.7 With an iron-sulfur protein as acceptor
1.2.7.1 pyruvate synthase
BD65_391 (nifJ)
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Gene cluster
GFIT
Motif
Pfam:
POR_N
POR
EKR
PFOR_II
Fer4_7
Fer4_10
Fer4_16
Fer4
TPP_enzyme_C
Fer4_6
Fer4_9
Fer4_21
Fer4_8
Fer4_17
Fer4_2
Fer4_4
DUF2732
Fer4_18
Transketolase_C
VP1-like_C
Motif
Other DBs
NCBI-ProteinID:
AJI94430
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All DBs
Position
436114..439644
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AA seq
1176 aa
AA seq
DB search
MITTDGNSAVASVAYRASEVIAIYPITPSSTMAELADAWSGNGKTNIWGDIPSVIEMQSE
GGAIATVHGALQTGALSTSFTSSQGLLLMIPTLYKLAGELTPFVLHVAARTVATHALSIF
GDHSDVMAVRQTGCAMLCASNVQEAQDFSLISHMATLNSRIPFIHFFDGFRTSHEINKIV
PLSDDKLRQLLPQKGIDQHRSRALTPDHPVIRGTSANPDTYFQCREASNPWYNQTYQHVA
DAMQAFVDATGREYKPFEYYGHPQAERVIVLMGSAIGTCEEVIDTLLTRGEKVGMVKIRL
FRPFSAEHLLSVLPVSASKIAVLDRTKEPGALAEPLYLDVMTSLAEAYSRGARASLPKVI
GGRYGLSSKEFGPDCALAIFKELTLAMPRPRFTVGIFDDVTGLSLPLSHESIPQRATLEA
LFYGLGSDGSVSATKNNLKIIGNSTSMYAQGYFVYDSKKAGGLTVSHLRISPTPIYSAYL
INQADFVGCHQLQFIDVYPMAERLKPGGIFLLNSPFDREEMWQRLPQEVQAVLHQRQARF
YVINAAKIARECQLGTRINTVMQMAFFHLTQILPTEVARQQLRDAIERSYSSKGQDIVAR
NGRALDATLNALMAIPLEPIDANSLMRPPIVSDQAPDFVKTVTAAMLAGLGDALPVSAFP
PDGTWPLGTTQWEKRNIAEQIPIWQPDLCTQCNHCVAACPHSAIRAKVVPPSAMTDAPAS
LHALDVKARDMRGQKYVLQVAPEDCTGCNLCYEVCPAKDRQNPAIKAINMQPRLAHLAEE
KAHYNFFLQLPEIDKTQIERIDIRTSQLISPLFEYSGACSGCGETPYIKLLTQLYGDRLL
IANATGCSSIYGGNLPTTPYTTDAAGRGPAWANSLFEDNAEFGLGFRLTVDQHRQRVQRL
LTTLAPQLPPELVTQLMSDASTEVRRDQVTQLRQRLASMTSHDAKQLATDADYLVDKSIW
LIGGDGWAYDIGFGGLDHVLSLTENVNVLVLDTQCYSNTGGQQSKATPLGAVTKFGEHGK
RKARKDLGVSMMMYGHVYVAQISLGAQLNQTVKAIQEAEAYPGPSLIIAYSPCEEHGYDL
AYSHEQMKQLTTTGFWPLYRFDPRRAEEGKAPLALDSRPPASDLTATLLNEQRFRRLNTQ
EPEIAAKLYADAEKDLKKRYNFLSLLAGKAEKDTAE
NT seq
3531 nt
NT seq
+upstream
nt +downstream
nt
atgatcacaactgacggcaacagcgcagtcgcctccgtggcttaccgcgccagtgaagtg
attgccatctaccctatcactcccagctcgacaatggcggaactggcggatgcttggtcg
ggcaacggcaaaaccaatatttggggtgatattcccagtgtcatagaaatgcagtctgaa
ggtggcgcaatcgccacggtacacggcgcgttgcaaaccggtgccttatcgacctcattc
acttcttcccagggtttgctgttaatgattccaaccctgtataaattagccggtgaatta
accccctttgtcttgcacgtcgccgcccgaactgtcgccacacatgctttatcgatcttt
ggcgatcattccgatgtcatggccgttcgtcaaaccggttgcgccatgctttgcgccagt
aacgtgcaggaagctcaggatttttcgctgatctcacatatggcaaccctgaatagccgc
attccttttatccattttttcgatggtttccgcacctctcacgaaatcaacaaaattgtc
ccactcagtgatgacaaactacgccaattgttaccacaaaaaggtattgatcaacatcgt
agccgggcactcacaccggatcatccggtaatccgtggtacatcggccaatcccgatacc
tatttccagtgcagagaagccagcaatccctggtataaccaaacctatcagcatgtagct
gatgccatgcaggcctttgttgatgccactggtcgcgaatataagccatttgaatactat
ggccatccacaggctgaacgggtgatagttttgatgggttcggccatcggcacctgtgaa
gaagtgattgatactctgctgactcgcggggaaaaagtcgggatggtaaaaattcgtctt
tttcggcctttttctgctgaacacctgctcagtgtattaccggtatcagccagtaaaatc
gcggtgctggatcgcactaaagaaccgggagccttagctgaaccgctctatctggatgtg
atgacctcgctggctgaagcctacagtcggggagcgcgtgccagtttgccaaaagtcatt
ggcggacgttatggattatcctccaaagagttcggcccagactgcgcactggctatcttt
aaagagcttacccttgctatgccacgaccacgttttaccgtcggtatttttgacgatgtc
accggtctttccctgccattgtcccatgaaagcatcccacagcgcgccacactggaagcg
cttttttacgggcttggtagcgatggatcggtttctgccaccaaaaacaacctcaaaatc
atcggcaatagtacctcaatgtatgctcagggttattttgtctatgactccaaaaaagcc
ggtggtctgacggtttctcatttacgcatcagccctacgccgatttattccgcctatctg
attaatcaggccgatttcgtcggttgccatcaactgcaatttatcgatgtttaccccatg
gctgaacgcctgaagccgggaggtattttcctgctgaatagtccatttgatcgcgaagag
atgtggcagcgcttaccgcaggaagttcaggccgtactccaccagcgccaagcccgtttt
tatgtgattaatgccgcaaaaatcgcccgagaatgtcaactgggcacccgtattaacact
gtcatgcaaatggcattcttccatttaacccaaatcctgccgaccgaagtggcccggcag
cagttacgcgatgcgattgaacgcagttatagcagtaaaggtcaggatatcgttgcacgc
aacggacgggcgctggatgccacgttgaatgctttgatggcaatcccgctggaacccatt
gatgccaatagcctgatgcgcccaccaatcgtgtctgatcaagcacctgatttcgtgaaa
accgtcaccgctgcgatgttggccggtttgggtgatgcgctacccgtctcggccttcccg
cctgacggtacttggccgctgggaacgactcaatgggaaaaacgcaatattgcggaacag
attccaatctggcagccggatctgtgtacccaatgcaaccactgcgtggcggcctgcccg
cactcggccattcgtgccaaagtggtgccaccgagcgcaatgaccgatgcgcccgccagt
ttgcacgctctggatgtcaaagcgcgcgatatgcgtgggcagaaatatgtcctgcaggtg
gctcccgaagactgcaccggctgcaatttatgctatgaggtctgcccagctaaagatcgg
cagaatcccgccatcaaagccatcaatatgcagccccggctggcacatttggcggaggaa
aaagcccattacaacttcttcctgcaactgccggaaatcgataaaacccagattgaacgc
atagatatccgcacttctcagctaatttctccgttgttcgagtactctggagcctgctcc
ggctgcggtgaaacgccttatatcaaattattgactcagttgtatggtgaccgattgctg
attgccaatgccactggctgttcctctatctatggcggcaatttgccgaccacgccttac
accaccgatgccgcaggacgcggcccggcctgggcaaactcgctgtttgaagacaatgct
gaattcggtttgggcttccgtctgacggtggatcaacaccgccagcgcgtgcagcgtctg
ctgactaccctggcaccgcagttaccgccagaattggtaacacaattaatgagcgacgcc
agcacggaggttcgccgcgatcaggtcactcaattgcgtcaacggctagcaagcatgacg
agccatgatgcgaagcagttagccaccgacgccgactatctggtggataaatccatctgg
ctgattggcggggatggctgggcctacgatattggttttggcggattggatcatgtactt
agtctgactgaaaacgtcaatgtgctggtgctagatacccaatgttactccaataccggt
ggccagcagtctaaagccaccccattgggcgcggtgaccaagtttggtgagcacggcaaa
cgtaaggcacgcaaagatcttggcgtcagtatgatgatgtacggccatgtttatgtggct
caaatctcactgggtgcgcagctcaaccaaacggtgaaagcgattcaggaagccgaagcc
tatccggggccatcgctgatcattgcctacagcccttgtgaagaacatggctatgatttg
gcttacagtcatgagcagatgaagcaactgaccaccaccggtttttggccgttgtatcgt
ttcgatcctcgtcgtgctgaagaaggcaaagcgccattagcgctggattctcggcctccg
gctagcgatctcaccgccaccttgcttaacgaacagcgattccgtcgcctgaatactcaa
gaaccggaaattgcggccaagttgtatgccgatgcagagaaggatctcaaaaaacgctac
aatttcctcagtctcttagccggtaaagccgaaaaagacacggcggaataa
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