Yersinia ruckeri YRB: BD65_74
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Entry
BD65_74 CDS
T03611
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
yru
Yersinia ruckeri YRB
Pathway
yru03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
yru00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
BD65_74 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
yru03400
]
BD65_74 (mfd)
Enzymes [BR:
yru01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
BD65_74 (mfd)
DNA repair and recombination proteins [BR:
yru03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
BD65_74 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MFD_D3
UvrB_inter
DEAD
TRCF
Helicase_C
CarD_TRCF_RID
ResIII
UB2H
ERCC3_RAD25_C
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
AJI95003
LinkDB
All DBs
Position
complement(78370..81816)
Genome browser
AA seq
1148 aa
AA seq
DB search
MSQQYRYSLPDRRGDVRQLGQLTGSACAIECAEIIERHPGPVMLIAPDMQNALRLRDEIQ
QFTSHHVSTLSDWETLPYDSFSPHQDIISARLSCLYQLPSMKRGVIILPVNTLMQRVCPH
EFLHGHALVMEKGQHLSRDKLRAQLEQAGYRSVDQVMEHGEFATRGALLDLYPMGSEEPY
RIDFFDDEIDSLRVFDVDSQRTLTEVDHISLLPAHEFPIGKAAIELFRSQWREQFEVRRD
PEHIYQQVSKGIWPAGIEYWQPLFFSQSLPSLFSYLPDNTLLVNTGDLEAAAERFWLDVN
QRYESRRIDPMRPLLAPETLWLRIDGLFSELKTWPRIQLKTDALPDKTANINLTYQSLPE
IAVQAQQKAPLDNLRRFIEGFSGRVVFSVESEGRRETLQDLLGRVKISPKLIARLDETSN
PGHYLMIGAAERGFLDNQRQLALICESDLLGERVSRRRQDHRRTINTDTLIRNLAELRPG
QPVVHLEHGVGRYLGLTTLEAGGIKAEYLILTYAGEDKLYVPVSSLHLISRYSGGADENA
PLHKLGGDAWSRARQKAAEKVRDVAAELLDIYAQRAVKSGFKFKLDREQYPLFCQSFPFE
TTPDQEQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVSNNKQVAVLVPTTL
LAQQHFDNFRDRFATWPVRIEMLSRFRSAKEQQVILEQAAEGKVDILIGTHKLLQSDLRW
KDLGLLIVDEEHRFGVRHKERIKAMRADVDILTLTATPIPRTLNMAMSGMRDLSIIATPP
ARRLAVKTFVREYDSLVVREAILREVLRGGQVYYLYNDVENIEKATQRLAELVPEARIAI
GHGQMRERDLERVMNDFHHQRFNVLVCTTIIETGIDIPSANTIIIERADHFGLAQLHQLR
GRVGRSHHQAYAYLLTPNPKAMTTDAKKRLEAIASLEDLGAGFALATHDLEIRGAGELLG
EDQSGQMTTIGFSLYMELLESAVDALKEGREPSLEDLTNNQTEIELRMPVLLPDDFISDV
NIRLSFYKRIASAHDDVELDELKVELIDRFGLLPDAARFLLQAASLRQHAQKLGIKRIEG
NERGGFIEFGEKNKVDPVYLIGLLQHQPQIFRLEGSSKLKFMQDLSDRSNRLKFIEQLLT
DFEQHRLG
NT seq
3447 nt
NT seq
+upstream
nt +downstream
nt
atgtcccaacaataccgttactcattacctgatcgccgtggcgatgtccgccagttaggc
cagttaactggctcagcctgcgctattgaatgtgccgaaattatcgagcgtcatcccggc
ccggtgatgcttattgcgccggatatgcaaaatgcgctgcgtttgcgggatgaaatccag
caatttacctctcaccatgtcagcactttatccgattgggaaacactgccctacgacagt
ttctcaccacatcaggacattatttccgcccgtttatcctgtctttatcaattgccaagc
atgaaacgcggcgtgatcattctacctgtcaatacactgatgcagcgcgtatgcccccac
gaattcctccacggtcacgcactggtgatggaaaaaggccagcatttatcccgggacaag
ctgcgcgcccagctagagcaagcgggttatcgcagcgtcgatcaggtcatggaacacggt
gaatttgccacccgaggtgcgttgctggatttatatcctatgggcagcgaagaaccttac
cgcattgatttctttgatgatgaaatcgatagtctgcgggtgtttgatgtggattcccaa
cgtacactaacggaagtggatcacatcagtctactgcctgcccatgagtttcctatcgga
aaggccgctatcgagctgtttcgcagccagtggcgcgagcagtttgaagtacggcgcgac
ccggaacatatttatcaacaagtcagcaaaggtatctggccagctggcatcgaatactgg
caaccgctgtttttcagtcagtcactgccatcgctgtttagttatctaccggataacacc
ttactggtgaataccggcgacctcgaagccgcagccgaacgtttctggctggatgtaaac
cagcgctatgagagccgccggattgatccgatgcgtccactgctggctccagaaacgctg
tggctccgaatcgatgggctatttagcgagttaaaaacctggcctcgtattcagttgaaa
accgatgccttgcccgataaaaccgccaatatcaatttaacgtatcaatcgctgccagag
attgccgtgcaagcgcagcaaaaagcgccgctggataatttgcgtcgttttatcgaaggt
tttagtggccgggtggtgttctcggtggaaagtgaaggacgcagggaaacgctgcaagat
ttacttggccgcgtcaaaatcagcccgaaactgatcgctcgcctggatgaaaccagcaat
cccggtcattatctgatgatcggtgctgctgagcgtggtttcctcgacaatcagcgacaa
ttggcgctgatttgcgaaagtgatttactgggtgaacgcgtcagccgccgtcgccaggat
catcgtcgcaccatcaataccgataccttaattcgtaatctggctgaattacgccctggc
cagccagtcgtacatctggaacacggtgtgggtcgttatttgggtctcactacgctggaa
gctggtggcattaaggccgaatacctgattttgacctacgccggtgaagataagctctat
gtaccggtttcctctctgcatctgattagccgttattctggtggtgccgatgaaaatgcc
ccactgcacaaattaggtggtgatgcctggagtcgcgcccgtcagaaagctgccgagaaa
gtgcgcgatgtggcagccgaactgctggatatctatgcccaacgcgcggtgaaatccggc
tttaaattcaaactggatcgcgaacaatacccgctgttctgccaaagcttcccatttgaa
actacgccagatcaggagcaggctatcaatgccgtcctcagcgatatgtgccaaccactg
gcgatggatcgtctggtttgtggtgatgttggtttcggtaaaaccgaagtggcaatgcgc
gctgctttcctggcagtcagcaataataaacaggtcgccgtattggtgccgactacatta
ctggcacaacagcatttcgataacttccgcgatcgcttcgccacctggcccgtgcgtatc
gagatgttatcacgcttccgtagcgccaaagagcagcaggttattctggagcaggcggca
gaaggaaaagtggatattcttatcggcacccataaattgctgcaaagtgatttgcgttgg
aaagaccttggcctgttgatcgtcgatgaagagcaccgcttcggggtgcgccacaaagag
cggattaaagctatgcgcgccgacgtggatattctaacactgacggcaacccccattccc
cgcacgctgaacatggccatgagcgggatgcgcgatttatccattatcgccaccccaccc
gcccgacgtctggcggtgaaaacgtttgtccgcgagtatgacagtctggtggtgcgtgag
gctattctgcgtgaagtgctgcgcggtgggcaggtttattatctgtataacgatgtggaa
aatattgagaaagccactcaacgactggcggaattggtaccggaggcacgaattgccatt
ggtcacggtcagatgcgtgagcgggatctagaacgggtgatgaatgatttccatcatcag
cggttcaacgtattggtctgcaccaccattattgaaaccggcatcgatattcccagtgcc
aataccatcattatcgagcgcgccgatcacttcggtctggcacagcttcatcagttacgt
ggacgtgtcgggcgttctcatcatcaggcttatgcttacttgctgacacccaatcccaaa
gccatgaccaccgacgcgaaaaaacgcctcgaggccatcgcttcactggaggatctcggt
gccggtttcgcattggcaacccacgatttggaaattcggggcgcgggcgaactgctgggc
gaagatcagagtggtcagatgaccaccattggtttctctttatatatggagctattggaa
agtgccgttgatgcgttgaaagaaggccgcgagccgtcactggaggatttgaccaacaat
cagaccgaaatcgaactacgcatgccagtactgttgccagacgatttcatttcagatgtt
aatatccgtctttcattctataaacgtattgccagcgctcatgatgacgtcgagctggat
gaattgaaagttgagctgattgaccgtttcgggttattgcctgatgcggcacgtttccta
ctacaggccgcctcactgcgccagcatgcgcagaagttgggaatcaaacggattgagggc
aatgagcgcggtggttttatcgagttcggagagaaaaacaaagtagatccggtttacctg
attggactacttcagcaccagccgcaaatattccgtctggaaggttcgagcaaactaaaa
ttcatgcaggatcttagcgatagaagcaaccgattgaaattcatcgaacaattactcact
gacttcgaacagcaccggttgggataa
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