Yersinia similis: BF17_09515
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Entry
BF17_09515 CDS
T03057
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
ysi
Yersinia similis
Pathway
ysi03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
ysi00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
BF17_09515
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ysi03021
]
BF17_09515
03400 DNA repair and recombination proteins [BR:
ysi03400
]
BF17_09515
Enzymes [BR:
ysi01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
BF17_09515
Transcription machinery [BR:
ysi03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
BF17_09515
DNA repair and recombination proteins [BR:
ysi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
BF17_09515
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-ProteinID:
AHK19517
UniProt:
A0A0T9RJW1
LinkDB
All DBs
Position
1965798..1970018
Genome browser
AA seq
1406 aa
AA seq
DB search
MKDLLKFLKAQTKTEEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCAR
IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSL
PSRIGLLLDMPLRDIERVLYFESYVVIEGGMTNLERRQILTEEQYLDALEEFGDEFDAKM
GAEAIQALLKNMDLEAECEILREELNETNSETKRKKLTKRIKLLEAFVQSGNKPEWMILT
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQ
EAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPY
LRLHQCGLPKKMALELFKPFIYGKLELRGLATTIKAAKKMVEREEAVVWDILDEVIREHP
VLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA
RALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTRDCVNAKGEGMVLTGPKEAERIYRAG
LASLHARVKVRITEEIRNTEGESITRTSIIDTTVGRAILWMIVPQGLPYSIVNQPLGKKA
ISKMLNTCYRILGLKPTVIFADQIMYTGFAYAARSGASVGIDDMVIPEAKAGIIEEAETE
VAEIQEQFQSGLVTAGERYNKVIDIWAAANERVAKAMMDNLSVEDVVNRDGVVEQQVSFN
SIFMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHNGIVMTPVIEGGDVKEPLRDRVL
GRVTAEEVIKPGSADILVPRNTLLDEKWCDLLEENSVDSVKVRSVVSCETDFGVCANCYG
RDLARGHIINKGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAESSIQVKNKGSLKL
SNVKFVTNAAGKLVITSRNTELKLIDEFGRTKESYKVPYGAVMAKGDGAEVQGGETVANW
DPHIMPVVTEVSGFIRFADMVDGQTITRQTDELTGLSSLVVLDSAERTGSGKDLRPALKI
VDAKGNDVLIPGTDMPAQYFLPGKAIVQLEDGIQIGAGDTLARIPQESSGTKDITGGLPR
VADLFEARRPKEPAILAEISGIISFGKETKGKRRLVISPLDGSDAYEEMIPKWRQLNVFE
GEVVERGDVVSDGPESPHDILRLRGVHAVTRYITNEVQEVYRLQGVKINDKHIEVIVRQM
LRKGTIVDAGSTDFLEGEQAEMSRVKIANRKLAAEGKIEATFTRDLLGITKASLATESFI
SAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYAYHQDRMRRKAQGEAPV
VPQVSADEATANLAELLNAGFGNNKG
NT seq
4221 nt
NT seq
+upstream
nt +downstream
nt
gtgaaagacttattaaagtttctgaaagcgcaaactaagaccgaagagtttgatgcgatc
aaaattgctctggcatcgccagacatgatccgttcatggtcattcggtgaagttaaaaag
ccggaaaccattaactaccgtacgttcaaaccagaacgtgacggccttttctgcgcccgt
atctttggcccagtaaaagattacgaatgcctgtgcggtaagtacaagcgtttaaaacac
cgtggtgttatttgtgagaaatgcggcgttgaagtgactcaaactaaagtgcgccgtgag
cgtatgggtcacatcgaactggcgtctccaactgcgcacatctggttcctgaaatcgctg
ccatctcgcatcggtttgctgctggatatgccattacgtgatatcgaacgtgtactgtac
ttcgaatcctatgtggttattgaaggcggtatgaccaacctggaacgtcgccagattctg
actgaagagcagtatctggatgcgttggaagagtttggtgatgagttcgacgcgaaaatg
ggcgccgaggctattcaggccctgttgaaaaacatggatctggaagctgagtgcgagatc
ctgcgtgaagaattgaacgaaacaaattctgaaaccaagcgtaagaagctgaccaagcgt
atcaagttgctggaagcgttcgtacagtctggcaacaagccagagtggatgatcctgact
gtgctgcctgtgttgccgccagatctacgtccattggttccgttggatggtggtcgcttt
gcgacttccgatctgaacgatttgtatcgtcgcgtgatcaaccgtaacaaccgtctaaaa
cgcctgctggacttggcggcaccggacatcatcgtacgtaacgaaaagcgtatgctgcaa
gaagcagtcgatgcattgctggataacggccgtcgcggtcgtgcgattaccggctctaac
aagcgtccgttgaagtcactggctgacatgatcaaaggtaagcaaggtcgtttccgtcag
aacttgctgggtaaacgtgttgactactcaggtcgttcggttattaccgttggtccatac
ctgcgtctgcatcagtgcggtctgcctaagaaaatggctcttgagctgttcaaaccgttc
atctatggcaagctggaactgcgtggtcttgctaccactatcaaagcagccaagaagatg
gttgagcgtgaagaagcagttgtttgggatatcctggatgaagttatccgcgaacaccca
gtgctgctgaaccgtgcaccaacccttcaccgtttgggtatccaggcgtttgaaccggtt
ctgatcgaaggtaaggcaatccagttgcacccattggtttgtgcggcatataacgccgac
ttcgatggtgaccaaatggctgttcacgtaccgctgacactggaagctcagttagaagcg
cgtgcgttaatgatgtctaccaacaacatcctgtcaccagcgaacggcgagccaatcatc
gttccttctcaggacgttgtattgggtctgtattacatgacccgcgactgtgttaacgcc
aaaggcgaaggcatggttctgactggtccgaaagaagctgagcgtatttatcgcgctggc
ctggcatctctgcatgcccgcgtaaaagtacgtattaccgaagaaattcgtaataccgaa
ggcgaaagcattacgcgtaccagcattattgatacgactgtaggccgggctattttgtgg
atgatcgtcccgcaaggcctgccttactctatcgttaaccagccgctgggcaaaaaagct
atctccaagatgctgaacacttgttaccgcatcttgggcttgaagccaacggttatcttt
gctgaccaaatcatgtacaccggttttgcttacgcagcacgctcaggcgcctctgtaggt
atcgatgacatggttatcccagaagcgaaagcggggatcatcgaagaagctgaaactgaa
gttgctgagatccaagagcagttccaatctggtctggtaacggcaggcgaacgttataac
aaagtgatcgatatctgggctgcggctaacgaacgtgttgctaaagcgatgatggataac
ttgtcggttgaggatgttgtcaaccgtgatggcgttgttgaacagcaagtttcattcaac
agcatcttcatgatggccgactccggtgcgcgtggttctgccgcacagattcgtcagctg
gcaggtatgcgtggtctgatggctaagccagacggctcgatcattgaaacgccaatcact
gcgaacttccgtgaaggtttgaacgtacttcagtacttcatctcaacccacggtgcgcgt
aaaggtttggcggataccgcattgaaaactgcgaactccggttacctgacccgtcgttta
gttgacgtggcacaggatctggtggtgactgaggatgattgtggtacccataatggtatc
gtgatgaccccggttatcgaaggtggtgatgttaaagagccactgcgtgatcgcgtactg
ggtcgtgtgaccgcagaagaagttatcaagcccggttcggctgatattctggttccgcgt
aacaccctgctggacgaaaaatggtgtgatctgttagaagaaaactccgtcgacagcgtt
aaagttcgctccgtagtaagctgtgaaactgacttcggtgtgtgtgctaactgctatggt
cgcgacctggcacgtggtcacatcatcaacaaaggtgaagcggttggtgttattgcagca
cagtccatcggtgagccgggtactcagcttacgatgcgtacgttccacatcggtggtgcg
gcatctcgtgcggcagcagaatccagcatccaggttaagaacaaaggcagcttgaaactg
agcaacgtcaagttcgtgaccaatgcggctggcaagctggttattacgtctcgtaatacc
gagctgaagctgatcgacgaattcggtcgtaccaaagaaagctataaagtgccttacggt
gcggtaatggctaaaggcgatggcgcagaagttcagggcggcgaaaccgttgctaactgg
gatccgcacatcatgccagtggtcaccgaagtgagcggtttcattcgcttcgccgacatg
gttgatggccagaccattactcgccagaccgacgaactgactggtttgtcttctctggtg
gttctggacagtgcagagcgtacgggtagcggtaaagatctgcgtccagcactgaaaatc
gttgatgccaaaggcaacgatgtattgatcccaggtactgatatgcctgctcaatacttc
ctgccaggtaaagcgattgtacagctggaagacggtattcagatcggtgcgggtgatacc
ctggcgcgtattcctcaggaatcaagcggtaccaaggatattaccggtggtctgccacgt
gttgctgacttgttcgaagcacgccgtccgaaagagcctgcaatcctggctgaaatcagc
gggatcatctcgttcggtaaagagaccaaaggcaagcgtcgtctggtgatctcaccgttg
gatggtagcgatgcatacgaagagatgattccgaaatggcgtcagcttaacgtgttcgaa
ggtgaagttgtggaacgcggtgatgtggtttccgatggcccagaatctccacatgatatt
ctgcgtctgcgtggcgttcacgcggttacccgctacatcaccaacgaagtgcaggaagtt
taccgtctgcaaggcgttaagattaacgataaacacattgaagttatcgttcgtcagatg
ctgcgtaaaggcactatcgttgatgcaggtagcaccgacttcctggaaggcgagcaggca
gaaatgtcccgcgttaaaatcgctaaccgtaagctggcagcagaaggcaaaatcgaggct
acgttcacccgtgacctgctgggtatcaccaaggcatccttggcgaccgagtccttcatc
tctgcggcttcgttccaggaaaccacgcgcgttcttactgaagcggcagttgccggtaaa
cgtgatgaactgcgcggcctgaaagaaaacgtaatcgtaggccgtctgatcccagccggt
actggttatgcttatcatcaggatcgtatgcgccgtaaagcacagggtgaagctcctgtt
gttccacaagtcagcgcggatgaagcgactgcaaacctggccgaattgcttaacgccggt
tttggtaacaacaaaggctaa
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integrated database retrieval system
