KEGG   Youhaiella tibetensis: FNA67_18405
Entry
FNA67_18405       CDS       T06140                                 
Symbol
ligD
Name
(GenBank) DNA ligase D
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
yti  Youhaiella tibetensis
Pathway
yti03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:yti00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    FNA67_18405 (ligD)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:yti03400]
    FNA67_18405 (ligD)
Enzymes [BR:yti01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     FNA67_18405 (ligD)
DNA repair and recombination proteins [BR:yti03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     FNA67_18405 (ligD)
SSDB
Motif
Pfam: LigD_Prim-Pol LigD_N DNA_ligase_A_C DNA_ligase_A_M RNA_ligase DNA_primase_S DNA_ligase_C
Other DBs
NCBI-ProteinID: QEE22024
UniProt: A0A5B9DUI4
LinkDB
Position
complement(3761862..3764435)
AA seq 857 aa
MAARAAQTLLKDYQAKRDFARTREPSGKQAGRTGKGKAGIFVVQQHDATRMHWDFRLELD
GVLKSWAVTRGPSNNPSDKRLAVRVEDHPLDYAHFEGTIPEGEYGGGTVMLWDEGTWEPL
GDPHKGLEEGDLKFRLNGQRMKGEWVLVHMKERDRGGKENWLLIKHRDEYASDDGEALVE
DNTTSVETGRNLEGIAKGLKSRKAPAKPKVWTHGKEVSLPDFRPPELATLVDAVPQGSGW
IFEMKYDGYRCLAAIAGEEVRLYTRNGNDWTTQFGAIREPLAGLTKGSALIDGELCAFDR
EGHTDFSTLKNALSTGAPLVYFVFDLLEEDGEDLTRLPLLERKERLARLLGKVDKTSPVQ
FSDHIEGNGQKVLDTLCAAGHEGVIAKRADSHYLGERTKAWLKVKCLKRQEFVIGGWRPS
DRKRTFASLLLGAWENDRLVYHGRVGTGFSAKEAAALQKALDERARKQTPFANAPRDISR
VARWVEPDLVAEIAYSEVTPDGALRHPSFIGLREDKPARSVKMEVASAPPAGAAPSKGKG
ARVQHLDPAKGVAAAERLGIRLTSPDRIAYPGQGVTKGELVAYYDAVADAMLPYIKDRPL
SLVRCPQGRAKACFFQKHDTGGFPAAMKTVEIAEKDGSKESYFYVSDLSGIVAAVQMNTL
EFHLWGSRRDKIELPERIIFDIDPDEGLGFEHVRAAAIDIRKGLESWGLESFAMLTGGKG
IHVIAPIARRTEWPEVKLFCKTFAQTMAEAEPERFTATLSKEKRQGKMFIDYLRNERGAT
AISPYSTRSREGAPVATPVTWAELETIERANAFSLAQAAERATGPNPWPDYFKLEQAITN
GMVNAVAGPVRKSAPKR
NT seq 2574 nt   +upstreamnt  +downstreamnt
atggccgcccgcgctgcccagacgttgctcaaggactaccaggccaagcgcgacttcgcc
cggacgcgcgaaccctccggcaagcaggccggcaggaccggcaaggggaaggccggcatc
ttcgtcgtccagcagcatgacgccacccgcatgcattgggacttccggctcgagctggat
ggcgtgctaaagagctgggcggtgacgcgcggcccatcgaacaacccttcggacaagcgg
ctcgccgtgcgggtcgaggatcacccgctcgactacgcccatttcgagggcacgattccg
gagggcgaatatggcgggggcaccgtcatgctctgggacgagggcacctgggagccgctg
ggggatccccacaaggggctcgaggagggcgaccttaagttccgcctcaacgggcagcgc
atgaagggcgaatgggtgctcgtccacatgaaggagcgcgatcgcggcggcaaggagaac
tggctgctcatcaagcaccgggacgaatatgcgagcgatgacggggaggcattggtcgaa
gacaacaccacgagcgtcgaaacgggccggaacctggaggggatcgccaagggtctcaag
tccaggaaggcgcccgccaagcccaaggtctggacgcatggcaaggaagtaagccttccc
gatttccgcccgcccgagctggcgacgctcgtcgatgccgtgccccagggctcgggctgg
atcttcgagatgaaatacgacggctaccggtgcctggcggcaatcgcgggcgaagaggtt
cggctctacacccgaaacgggaacgactggaccacccagttcggtgcgatccgcgagccg
ctcgccggcttgacgaagggcagcgccctcatcgacggagaattgtgcgccttcgaccga
gagggccataccgatttttcgacactcaagaacgcgctctcgacgggtgcgccgctggtc
tatttcgttttcgaccttctcgaagaggacggcgaggacctgacgcgactgcccctgctc
gagcgcaaggagcggctggccaggctcctggggaaggtcgacaagacctccccggtccag
ttttcggaccatatcgagggcaatgggcaaaaggtgctcgatacgctttgcgcggcgggc
cacgagggcgtcatcgccaagcgcgcggactcgcactacctgggcgagcggaccaaggcc
tggctcaaggtcaaatgcctcaagcgccaggaatttgtcatcggcggctggcggccttcg
gacaggaagcgcaccttcgcctcgttgctcctgggagcctgggagaacgacaggctcgtc
tatcacggccgcgtcggcaccggcttttccgccaaggaagcggccgccctccagaaggcg
ctcgatgagcgggcgcgcaagcagacgcccttcgctaacgccccgcgcgacatctcgcgg
gtagcgcgctgggtcgagccggacctggtggccgagatcgcctatagcgaggtcacgccc
gacggcgccctgcgccacccctccttcatcggcctgcgggaagacaagccggcgcgctct
gttaagatggaagtggccagtgcgccgccggcaggggcggcaccgtcaaaaggcaaagga
gcgcgcgtgcagcacctcgatccggcaaagggcgtggcggcggccgagcgccttggcatc
cggctgaccagcccagatcgcatcgcctatccggggcagggcgtcaccaagggcgaactc
gttgcctattacgatgcggtcgcagacgccatgctgccctacatcaaggatcgtccgctc
agcctggtgcgctgcccgcaggggcgcgccaaggcctgcttctttcaaaagcacgatacc
ggcgggttccctgcggcgatgaagaccgtcgagatcgccgagaaggatggctctaaggaa
agctatttctacgtctcggatctctccggcatcgtcgcggccgtccagatgaacacgctc
gaattccacctctgggggtcgcgccgcgacaagatcgaactgcccgagcgcatcatcttc
gatatcgatccggatgaaggcctggggttcgagcacgtccgcgccgccgccatcgacatc
cgcaagggcctggaaagctggggcttggaaagttttgccatgctgacgggcgggaagggc
atccatgtcatcgcgcccatcgcgcgccgcaccgagtggccggaggtcaagctcttctgc
aagaccttcgcccagacgatggccgaggcggaaccggaaaggttcaccgccacgctttcc
aaggagaagcgccagggcaagatgttcatcgactatctgcgcaacgaacgcggcgccacg
gcgatctcgccctattccacccgctcgcgtgaaggcgcccccgtcgcaacgccggtgacg
tgggcggaactggaaaccatcgagcgcgccaatgccttctcgctcgcccaggcggcggaa
cgggcaacgggccccaacccgtggcccgactatttcaagctggaacaggccatcaccaac
gggatggtcaatgccgtggccggcccagtccgcaagagcgcaccgaagcgttag

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