Youhaiella tibetensis: FNA67_18405
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Entry
FNA67_18405 CDS
T06140
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
yti
Youhaiella tibetensis
Pathway
yti03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
yti00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
FNA67_18405 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
yti03400
]
FNA67_18405 (ligD)
Enzymes [BR:
yti01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
FNA67_18405 (ligD)
DNA repair and recombination proteins [BR:
yti03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
FNA67_18405 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
RNA_ligase
DNA_primase_S
DNA_ligase_C
Motif
Other DBs
NCBI-ProteinID:
QEE22024
UniProt:
A0A5B9DUI4
LinkDB
All DBs
Position
complement(3761862..3764435)
Genome browser
AA seq
857 aa
AA seq
DB search
MAARAAQTLLKDYQAKRDFARTREPSGKQAGRTGKGKAGIFVVQQHDATRMHWDFRLELD
GVLKSWAVTRGPSNNPSDKRLAVRVEDHPLDYAHFEGTIPEGEYGGGTVMLWDEGTWEPL
GDPHKGLEEGDLKFRLNGQRMKGEWVLVHMKERDRGGKENWLLIKHRDEYASDDGEALVE
DNTTSVETGRNLEGIAKGLKSRKAPAKPKVWTHGKEVSLPDFRPPELATLVDAVPQGSGW
IFEMKYDGYRCLAAIAGEEVRLYTRNGNDWTTQFGAIREPLAGLTKGSALIDGELCAFDR
EGHTDFSTLKNALSTGAPLVYFVFDLLEEDGEDLTRLPLLERKERLARLLGKVDKTSPVQ
FSDHIEGNGQKVLDTLCAAGHEGVIAKRADSHYLGERTKAWLKVKCLKRQEFVIGGWRPS
DRKRTFASLLLGAWENDRLVYHGRVGTGFSAKEAAALQKALDERARKQTPFANAPRDISR
VARWVEPDLVAEIAYSEVTPDGALRHPSFIGLREDKPARSVKMEVASAPPAGAAPSKGKG
ARVQHLDPAKGVAAAERLGIRLTSPDRIAYPGQGVTKGELVAYYDAVADAMLPYIKDRPL
SLVRCPQGRAKACFFQKHDTGGFPAAMKTVEIAEKDGSKESYFYVSDLSGIVAAVQMNTL
EFHLWGSRRDKIELPERIIFDIDPDEGLGFEHVRAAAIDIRKGLESWGLESFAMLTGGKG
IHVIAPIARRTEWPEVKLFCKTFAQTMAEAEPERFTATLSKEKRQGKMFIDYLRNERGAT
AISPYSTRSREGAPVATPVTWAELETIERANAFSLAQAAERATGPNPWPDYFKLEQAITN
GMVNAVAGPVRKSAPKR
NT seq
2574 nt
NT seq
+upstream
nt +downstream
nt
atggccgcccgcgctgcccagacgttgctcaaggactaccaggccaagcgcgacttcgcc
cggacgcgcgaaccctccggcaagcaggccggcaggaccggcaaggggaaggccggcatc
ttcgtcgtccagcagcatgacgccacccgcatgcattgggacttccggctcgagctggat
ggcgtgctaaagagctgggcggtgacgcgcggcccatcgaacaacccttcggacaagcgg
ctcgccgtgcgggtcgaggatcacccgctcgactacgcccatttcgagggcacgattccg
gagggcgaatatggcgggggcaccgtcatgctctgggacgagggcacctgggagccgctg
ggggatccccacaaggggctcgaggagggcgaccttaagttccgcctcaacgggcagcgc
atgaagggcgaatgggtgctcgtccacatgaaggagcgcgatcgcggcggcaaggagaac
tggctgctcatcaagcaccgggacgaatatgcgagcgatgacggggaggcattggtcgaa
gacaacaccacgagcgtcgaaacgggccggaacctggaggggatcgccaagggtctcaag
tccaggaaggcgcccgccaagcccaaggtctggacgcatggcaaggaagtaagccttccc
gatttccgcccgcccgagctggcgacgctcgtcgatgccgtgccccagggctcgggctgg
atcttcgagatgaaatacgacggctaccggtgcctggcggcaatcgcgggcgaagaggtt
cggctctacacccgaaacgggaacgactggaccacccagttcggtgcgatccgcgagccg
ctcgccggcttgacgaagggcagcgccctcatcgacggagaattgtgcgccttcgaccga
gagggccataccgatttttcgacactcaagaacgcgctctcgacgggtgcgccgctggtc
tatttcgttttcgaccttctcgaagaggacggcgaggacctgacgcgactgcccctgctc
gagcgcaaggagcggctggccaggctcctggggaaggtcgacaagacctccccggtccag
ttttcggaccatatcgagggcaatgggcaaaaggtgctcgatacgctttgcgcggcgggc
cacgagggcgtcatcgccaagcgcgcggactcgcactacctgggcgagcggaccaaggcc
tggctcaaggtcaaatgcctcaagcgccaggaatttgtcatcggcggctggcggccttcg
gacaggaagcgcaccttcgcctcgttgctcctgggagcctgggagaacgacaggctcgtc
tatcacggccgcgtcggcaccggcttttccgccaaggaagcggccgccctccagaaggcg
ctcgatgagcgggcgcgcaagcagacgcccttcgctaacgccccgcgcgacatctcgcgg
gtagcgcgctgggtcgagccggacctggtggccgagatcgcctatagcgaggtcacgccc
gacggcgccctgcgccacccctccttcatcggcctgcgggaagacaagccggcgcgctct
gttaagatggaagtggccagtgcgccgccggcaggggcggcaccgtcaaaaggcaaagga
gcgcgcgtgcagcacctcgatccggcaaagggcgtggcggcggccgagcgccttggcatc
cggctgaccagcccagatcgcatcgcctatccggggcagggcgtcaccaagggcgaactc
gttgcctattacgatgcggtcgcagacgccatgctgccctacatcaaggatcgtccgctc
agcctggtgcgctgcccgcaggggcgcgccaaggcctgcttctttcaaaagcacgatacc
ggcgggttccctgcggcgatgaagaccgtcgagatcgccgagaaggatggctctaaggaa
agctatttctacgtctcggatctctccggcatcgtcgcggccgtccagatgaacacgctc
gaattccacctctgggggtcgcgccgcgacaagatcgaactgcccgagcgcatcatcttc
gatatcgatccggatgaaggcctggggttcgagcacgtccgcgccgccgccatcgacatc
cgcaagggcctggaaagctggggcttggaaagttttgccatgctgacgggcgggaagggc
atccatgtcatcgcgcccatcgcgcgccgcaccgagtggccggaggtcaagctcttctgc
aagaccttcgcccagacgatggccgaggcggaaccggaaaggttcaccgccacgctttcc
aaggagaagcgccagggcaagatgttcatcgactatctgcgcaacgaacgcggcgccacg
gcgatctcgccctattccacccgctcgcgtgaaggcgcccccgtcgcaacgccggtgacg
tgggcggaactggaaaccatcgagcgcgccaatgccttctcgctcgcccaggcggcggaa
cgggcaacgggccccaacccgtggcccgactatttcaagctggaacaggccatcaccaac
gggatggtcaatgccgtggccggcccagtccgcaagagcgcaccgaagcgttag
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