Zalophus californianus (California sea lion): 113920703
Help
Entry
113920703 CDS
T07874
Symbol
LIG4
Name
(RefSeq) DNA ligase 4
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
zca
Zalophus californianus (California sea lion)
Pathway
zca03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
zca00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
113920703 (LIG4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
zca03400
]
113920703 (LIG4)
Enzymes [BR:
zca01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
113920703 (LIG4)
DNA repair and recombination proteins [BR:
zca03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
113920703 (LIG4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
BRCT
DNA_ligase_IV
DNA_ligase_A_C
BRCT_2
RNA_ligase
mRNA_cap_enzyme
LIG3_BRCT
ATG17_like
Motif
Other DBs
NCBI-GeneID:
113920703
NCBI-ProteinID:
XP_027446788
UniProt:
A0A6J2CR98
LinkDB
All DBs
Position
3:4507216..4517367
Genome browser
AA seq
911 aa
AA seq
DB search
MAASQTSQTVASHVPFADLCSTLERIQRSRGRAEKIRHFREFLDSWRRFHDALHKNQTDV
RDSFYPAMRLILPQLERERMAYGIKETMLAKLYIELLNLPKDGKDALKLLNYRTPTGPRG
DAGDFATIAYFVLKPRCLQKGSLTIQQVNDILDSIASNNSARRKDLIKKSLLQLISQSSA
LEQKWLIRMIVKDLKLGFSEQSVFSVFHNDAVELHNVTTDLEKVCRQLHDPSIGLSDISI
TLFSAFKPMLAAMADTEQIEKAMKHQSFYIETKLDGERMQMHKQGDAYQYFSRNGFNYTD
QFGKSPLEGSLTPFIHSAFKTDVQICILDGEMMAFNPNTQTFMQKGNKFDIKRMVEDSDL
QTCYCVFDVLMVNNKKLGHEILKKRYEILTSVFTPVPGRIEMVQKTQAHTQKEVIDALNE
AIDKREEGIMIKQPLSIYKPDKRGEGWLKIKPEYVDGLMDELDILIVGGYWGKGSRGGMM
SHFLCAVAEKPPPGEKPSAFHTLCRVGSGYTMKELYDLGLKLAQHWKPFHRKAPPSSILC
GTEKPEVYIEPCHSVIVQVKATEIVPSDMYKTGCTLRFPRIEKIREDKEWHECTTLDDLE
QLRGKASGKLASKHLYIGGDEEPQEKKRKAAPKVKKVIGIIEHLKAPNLSNVNKISNIFE
DVEFCVMSGTDSHPKPDLENRIAEFGGYIVQNPGPDTYCVIAGSENIRVKNIISSNKHDV
VKPEWLLECFKTKSCVPWQPRFMIHMCPSTKEHFAREYDCYGDSYFVDTDLNQLKEVFSG
IKNSSAQTPGEMASVIANLEYRYSWDRSPLSMFRHHIVYLDLYAVINDLSTKIEGTRLAV
TALELRFHGAKVVSRLAQGVSHVIIGEDQSRVADLKAFRRTLKRKFKILQQDWVTDSIDK
HELQEENLYLV
NT seq
2736 nt
NT seq
+upstream
nt +downstream
nt
atggctgcctcacagacttcgcaaactgttgcatctcacgttccttttgcagacttgtgt
tcaactttagaacgaatacagagaagtagaggacgtgcagaaaaaatcagacacttcagg
gaatttttagattcttggagaagatttcacgatgcccttcataagaaccaaacggatgtc
agggactccttttatccagcaatgagacttattcttcctcagctagaaagagagagaatg
gcctatggaatcaaagaaactatgcttgctaaactttatatcgaattgcttaatttacct
aaagacggaaaagacgcccttaaacttttaaattatagaacgcccaccgggcctcgtgga
gatgctggagactttgcaacaattgcatattttgtgttgaaaccaagatgcttgcagaaa
ggaagtttaaccatacagcaggtaaatgacattttagactcaattgccagcaataattct
gccagaagaaaggacctaataaagaagagtcttcttcagctaataagtcagagttcagcg
ctggaacaaaagtggcttatacggatgattgtaaaggacttaaaacttggtttcagtgag
cagtctgtattttctgttttccataatgatgctgtcgagttgcataatgtcaccacagat
ctggagaaagtctgtaggcaactgcatgatccttctataggactcagtgacatttccatc
actttattctctgccttcaaaccaatgctggctgctatggcagatactgagcaaatcgag
aaggccatgaaacaccagagtttctacattgaaaccaagctagacggtgagcgtatgcag
atgcacaaacagggggatgcgtatcagtacttctcccgaaatggttttaactatacggat
cagtttggcaaatctcccctggaaggttctctcacaccgttcattcacagtgcatttaaa
acagatgtacagatctgtatcctggatggagagatgatggccttcaatcctaacacacag
acttttatgcaaaaggggaataagtttgatatcaaaagaatggtggaggattctgatctg
caaacttgttattgcgtgtttgatgtactgatggttaataataaaaagctgggacatgag
atcctgaaaaagaggtatgaaattcttactagtgtttttacaccagtaccaggtagaata
gaaatggtgcaaaaaacacaagctcatactcagaaagaagtgatcgacgctttgaatgaa
gccatagataaaagggaagagggaatcatgataaaacagcctctgtctatttacaagcca
gacaaaagaggcgaaggatggttgaaaattaaaccagagtacgtggatgggctgatggat
gagctggacatcttaattgtcgggggctactggggtaaaggttcccgaggtgggatgatg
tctcattttttgtgtgctgtagcagagaagcctcctcctggtgaaaaaccgtcagcgttt
catactctgtgtcgtgttggttcgggttataccatgaaagagctgtacgatctgggtttg
aaattggcccaacattggaagccttttcatagaaaagctccaccaagcagcattttgtgt
ggaacagagaagcctgaggtgtacatcgagccttgtcattctgtcattgttcaagttaag
gccacagagatcgtccccagcgatatgtataaaactggctgcacactgcgttttccacga
atcgagaagataagagaagacaaagagtggcacgaatgcaccaccctggatgacttagaa
cagcttcgtgggaaagcatcgggaaagcttgcgtccaaacacctttacattggtggtgat
gaagaaccacaggagaagaagaggaaggctgccccgaaggtgaagaaagttattggaatt
atcgagcacttaaaagcacccaacctttccaatgtaaacaaaatttctaatatatttgaa
gatgtggagttctgtgtcatgagcggaacagacagccatccgaagcctgatctggagaac
agaattgcagaatttggtggttatatagtacaaaatccaggcccagacacatactgcgtg
attgcggggtccgagaacattagagtgaaaaacataatttcttcgaataaacatgatgtt
gtcaagcccgagtggctgttggagtgttttaagaccaaaagctgcgtgccgtggcagcct
cgctttatgattcatatgtgcccatcaacaaaggaacattttgcccgtgaatatgactgt
tatggtgacagttattttgttgatacagatttgaaccaactgaaggaagtgttctcaggg
attaaaaattccagcgcacaaactcctggagaaatggcttctgtgattgctaatttagag
tatcggtattcctgggaccgttcccctctcagtatgtttcgacaccacattgtttatttg
gacttgtatgctgttattaatgacttgagtaccaaaatcgagggaacgagattagctgtt
acagctctggagcttcgatttcatggagccaaagtagtttctcgtttagctcagggagtg
tctcatgtaatcattggggaggatcagagccgtgttgcagatttaaaagcttttcgaaga
actcttaagagaaagtttaaaatcctgcaacaagattgggtaactgattcaatagacaag
catgagttgcaggaggaaaatctatatttggtttaa
DBGET
integrated database retrieval system