KEGG   Zalophus californianus (California sea lion): 113920703
Entry
113920703         CDS       T07874                                 
Symbol
LIG4
Name
(RefSeq) DNA ligase 4
  KO
K10777  DNA ligase 4 [EC:6.5.1.1]
Organism
zca  Zalophus californianus (California sea lion)
Pathway
zca03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:zca00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    113920703 (LIG4)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:zca03400]
    113920703 (LIG4)
Enzymes [BR:zca01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     113920703 (LIG4)
DNA repair and recombination proteins [BR:zca03400]
 Eukaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    DNA Ligase 4 complex
     113920703 (LIG4)
SSDB
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N BRCT DNA_ligase_IV DNA_ligase_A_C BRCT_2 RNA_ligase mRNA_cap_enzyme LIG3_BRCT ATG17_like
Other DBs
NCBI-GeneID: 113920703
NCBI-ProteinID: XP_027446788
UniProt: A0A6J2CR98
LinkDB
Position
3:4507216..4517367
AA seq 911 aa
MAASQTSQTVASHVPFADLCSTLERIQRSRGRAEKIRHFREFLDSWRRFHDALHKNQTDV
RDSFYPAMRLILPQLERERMAYGIKETMLAKLYIELLNLPKDGKDALKLLNYRTPTGPRG
DAGDFATIAYFVLKPRCLQKGSLTIQQVNDILDSIASNNSARRKDLIKKSLLQLISQSSA
LEQKWLIRMIVKDLKLGFSEQSVFSVFHNDAVELHNVTTDLEKVCRQLHDPSIGLSDISI
TLFSAFKPMLAAMADTEQIEKAMKHQSFYIETKLDGERMQMHKQGDAYQYFSRNGFNYTD
QFGKSPLEGSLTPFIHSAFKTDVQICILDGEMMAFNPNTQTFMQKGNKFDIKRMVEDSDL
QTCYCVFDVLMVNNKKLGHEILKKRYEILTSVFTPVPGRIEMVQKTQAHTQKEVIDALNE
AIDKREEGIMIKQPLSIYKPDKRGEGWLKIKPEYVDGLMDELDILIVGGYWGKGSRGGMM
SHFLCAVAEKPPPGEKPSAFHTLCRVGSGYTMKELYDLGLKLAQHWKPFHRKAPPSSILC
GTEKPEVYIEPCHSVIVQVKATEIVPSDMYKTGCTLRFPRIEKIREDKEWHECTTLDDLE
QLRGKASGKLASKHLYIGGDEEPQEKKRKAAPKVKKVIGIIEHLKAPNLSNVNKISNIFE
DVEFCVMSGTDSHPKPDLENRIAEFGGYIVQNPGPDTYCVIAGSENIRVKNIISSNKHDV
VKPEWLLECFKTKSCVPWQPRFMIHMCPSTKEHFAREYDCYGDSYFVDTDLNQLKEVFSG
IKNSSAQTPGEMASVIANLEYRYSWDRSPLSMFRHHIVYLDLYAVINDLSTKIEGTRLAV
TALELRFHGAKVVSRLAQGVSHVIIGEDQSRVADLKAFRRTLKRKFKILQQDWVTDSIDK
HELQEENLYLV
NT seq 2736 nt   +upstreamnt  +downstreamnt
atggctgcctcacagacttcgcaaactgttgcatctcacgttccttttgcagacttgtgt
tcaactttagaacgaatacagagaagtagaggacgtgcagaaaaaatcagacacttcagg
gaatttttagattcttggagaagatttcacgatgcccttcataagaaccaaacggatgtc
agggactccttttatccagcaatgagacttattcttcctcagctagaaagagagagaatg
gcctatggaatcaaagaaactatgcttgctaaactttatatcgaattgcttaatttacct
aaagacggaaaagacgcccttaaacttttaaattatagaacgcccaccgggcctcgtgga
gatgctggagactttgcaacaattgcatattttgtgttgaaaccaagatgcttgcagaaa
ggaagtttaaccatacagcaggtaaatgacattttagactcaattgccagcaataattct
gccagaagaaaggacctaataaagaagagtcttcttcagctaataagtcagagttcagcg
ctggaacaaaagtggcttatacggatgattgtaaaggacttaaaacttggtttcagtgag
cagtctgtattttctgttttccataatgatgctgtcgagttgcataatgtcaccacagat
ctggagaaagtctgtaggcaactgcatgatccttctataggactcagtgacatttccatc
actttattctctgccttcaaaccaatgctggctgctatggcagatactgagcaaatcgag
aaggccatgaaacaccagagtttctacattgaaaccaagctagacggtgagcgtatgcag
atgcacaaacagggggatgcgtatcagtacttctcccgaaatggttttaactatacggat
cagtttggcaaatctcccctggaaggttctctcacaccgttcattcacagtgcatttaaa
acagatgtacagatctgtatcctggatggagagatgatggccttcaatcctaacacacag
acttttatgcaaaaggggaataagtttgatatcaaaagaatggtggaggattctgatctg
caaacttgttattgcgtgtttgatgtactgatggttaataataaaaagctgggacatgag
atcctgaaaaagaggtatgaaattcttactagtgtttttacaccagtaccaggtagaata
gaaatggtgcaaaaaacacaagctcatactcagaaagaagtgatcgacgctttgaatgaa
gccatagataaaagggaagagggaatcatgataaaacagcctctgtctatttacaagcca
gacaaaagaggcgaaggatggttgaaaattaaaccagagtacgtggatgggctgatggat
gagctggacatcttaattgtcgggggctactggggtaaaggttcccgaggtgggatgatg
tctcattttttgtgtgctgtagcagagaagcctcctcctggtgaaaaaccgtcagcgttt
catactctgtgtcgtgttggttcgggttataccatgaaagagctgtacgatctgggtttg
aaattggcccaacattggaagccttttcatagaaaagctccaccaagcagcattttgtgt
ggaacagagaagcctgaggtgtacatcgagccttgtcattctgtcattgttcaagttaag
gccacagagatcgtccccagcgatatgtataaaactggctgcacactgcgttttccacga
atcgagaagataagagaagacaaagagtggcacgaatgcaccaccctggatgacttagaa
cagcttcgtgggaaagcatcgggaaagcttgcgtccaaacacctttacattggtggtgat
gaagaaccacaggagaagaagaggaaggctgccccgaaggtgaagaaagttattggaatt
atcgagcacttaaaagcacccaacctttccaatgtaaacaaaatttctaatatatttgaa
gatgtggagttctgtgtcatgagcggaacagacagccatccgaagcctgatctggagaac
agaattgcagaatttggtggttatatagtacaaaatccaggcccagacacatactgcgtg
attgcggggtccgagaacattagagtgaaaaacataatttcttcgaataaacatgatgtt
gtcaagcccgagtggctgttggagtgttttaagaccaaaagctgcgtgccgtggcagcct
cgctttatgattcatatgtgcccatcaacaaaggaacattttgcccgtgaatatgactgt
tatggtgacagttattttgttgatacagatttgaaccaactgaaggaagtgttctcaggg
attaaaaattccagcgcacaaactcctggagaaatggcttctgtgattgctaatttagag
tatcggtattcctgggaccgttcccctctcagtatgtttcgacaccacattgtttatttg
gacttgtatgctgttattaatgacttgagtaccaaaatcgagggaacgagattagctgtt
acagctctggagcttcgatttcatggagccaaagtagtttctcgtttagctcagggagtg
tctcatgtaatcattggggaggatcagagccgtgttgcagatttaaaagcttttcgaaga
actcttaagagaaagtttaaaatcctgcaacaagattgggtaactgattcaatagacaag
catgagttgcaggaggaaaatctatatttggtttaa

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