Zalophus californianus (California sea lion): 113924201
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Entry
113924201 CDS
T07874
Symbol
DDX60
Name
(RefSeq) probable ATP-dependent RNA helicase DDX60 isoform X1
KO
K20103
ATP-dependent RNA helicase DDX60 [EC:
5.6.2.7
]
Organism
zca
Zalophus californianus (California sea lion)
Brite
KEGG Orthology (KO) [BR:
zca00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
zca03019
]
113924201 (DDX60)
Enzymes [BR:
zca01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
113924201 (DDX60)
Messenger RNA biogenesis [BR:
zca03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Exosome cofactors
113924201 (DDX60)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
ResIII
Helicase_C
Motif
Other DBs
NCBI-GeneID:
113924201
NCBI-ProteinID:
XP_027453403
EnsemblRapid:
ENSZCAG00025006618
UniProt:
A0A6J2DAL0
LinkDB
All DBs
Position
2:complement(142485264..142595240)
Genome browser
AA seq
1707 aa
AA seq
DB search
MDLEEHVMFLERMSQLILSAVPKAEYSSLFNDFVESEFFLIDGDSLLATCVCEKSLKPGQ
ELHFFYLVECYLTDLISKGGQFAIVFFKDAEYAYFNFPELLPLRTALILHLQHNTTIDVR
TKFSGCLSQEWEIFLEDSYPYYLIVADEGLNHLQTHLFNFLITQSWAMKVNIVLSSGQTS
DILRLYAYLMPSMYKNQKFFKENKKKIEMAYKTLIKQLEECRFSALESLFGNLKWKNMME
EACETISQLKQLWPEGSDIRRVLCVTSCSLSLRMYHHFLENRKTTSIEKTNIQEGESNCL
ALQEMEDLCKLHCLSVVFLLHLPLSQRACTRVITSHWTKNIHTFLEMKKWCEYFILSNIN
ICEFWNLNLIHLSDLSDELLLKNIAFYYENENVEGLHLNLGDVIMKDYEHLWNTVSKLVR
KFAVGKPFPLRTTKLSFLEKNPSPIKDTAKENIPNLGFISMSCEVVDKFVGDFLTDLPFL
KSDDPIVTSLVKHKEFDELVHWHSHRPLSDDYDRTKCQFDEKSRDPHHLRSLQKYHLFQR
FYGNSLESVSPKIVVTQAVKPKNNFIAPKNKKAHETKAEIITRENKKRLIAKEEQKEEKK
WSVLSFSIEEEMKENLNSGIKNLEEFLKSCKSNSVKFRVEMVALTACLKAWKEHCRGETT
KDLNIAVQMMKRIHSLMEKYPELLQEADQQLIARCLKYLGFDELASSLYPTQVARDDMKK
TDKYSIGIGPVRFQLQYMGHYLIRDERKDPDPRVQDFIPDTWQRELLDVVDNNESAVIVA
PTSSGKTYASYYCMEKVLKESNEGVVVYVAPTKALVNQVAATVQNRFTKSLPNGEALCGV
FTRDYRHDALNCQVLITVPACFEILLLAPHRQTWVKRIRYVIFDEVHCLGGEIGAEVWEH
LLVMIRCPFLALSATISNPQHLTEWLQSVKHYWKQEDSTMGKNTAFKRNAGCCANSPKDY
FQIKESYKVRLVLYGERYNDLEKHICSIKHHDIYFDHFHPCAALTTDHIEKYGFPSDLTL
SPRETIQLYDTMFQFWESWPRAQEFDPEKFIHFKNKIVIKKLDARKYEESLKAELTSWIQ
NGHAEEAKMVLRNLSPDSGFSSENMLRMFPLLVEKLRKMEKLPALFFLFSLGDVEQTALR
VRRCLEREQERQRPPKADKEAYDITNKLQKVKKSIEKLKTMDEKSQKNPRRVDQRLIYET
EHNNLLKTLEKNLEMPQECTYANQKAIDTETLQMVFDRVKFTRKGAELKALARRGIGYHH
SALNSKEKQLVEILFRKGFIRVVTATGTLALGINMPCKSVVFAQNSIYLDALNYRQMSGR
AGRRGQDLLGDVYFFNIPLPKIEKLIKSNVPELRGQFPLGITLVLRLMLLASKGDDPEDA
KAKVLSVLKHSLLSFKKPRVIKMLKLYFLFSLQFLMKQGYLDQEGKPMGFAGLVSHLHYH
EPSNLVFVSFLVKGLFHNLCQPTGKGSRHFSQDVMEKLVLVLANLFGRRPLPAKFQETTV
KFCQSKVFLDDLPEDFNDALHEYNMDVTKDFASFLLNVAKLADMKQEYQLPLSKINFTGK
ECEGSELVSHLMNCKEGRAAISPFVCLSGNSDGDLLLPNTPNDVLLRTVGINHTQAPVLW
SQIFDNQGRRMPLNAYALDFYKHGSLTGLVQDNRMNEGAAYDLLKDFALTIKSLSVSLRE
LCENEDDNVVLAFEQLSDTFTEKLNGV
NT seq
5124 nt
NT seq
+upstream
nt +downstream
nt
atggatttagaagaacacgtgatgtttttagagagaatgtcacagctaattttgagtgca
gtgccaaaagctgaatattccagtttattcaatgattttgttgaatctgaattttttctg
attgatggagattcattacttgctacatgcgtatgtgagaaatcattaaagccagggcag
gagctccacttcttttatctggttgaatgctatcttacggatcttatcagtaaaggagga
caatttgccatagttttcttcaaggatgctgagtatgcatatttcaacttccctgaactt
cttcctttgagaactgctttaattcttcatcttcagcataataccaccattgatgttcga
acaaaattttctggatgcctgtcacaggagtgggaaattttcttggaagacagttaccca
tattacctgatagttgccgatgaaggcttgaaccatctacaaacacaccttttcaacttt
ttaattactcagtcttgggcaatgaaggtcaacattgtgctttcctcagggcaaacatct
gatattcttcgactttatgcataccttatgccaagcatgtataaaaaccaaaaatttttc
aaagagaataaaaagaagattgagatggcttataaaaccctgattaaacaattggaagaa
tgtagattttcagcactagaatcactttttggaaatttaaaatggaagaatatgatggaa
gaggcatgtgaaactatttctcagcttaagcaactctggccagaaggatctgacattcgg
cgtgttctttgtgttacttcatgctcgttgtctttgagaatgtaccatcactttttagaa
aatagaaagactacctctattgagaaaactaacatccaagagggggaaagtaattgctta
gccctgcaagagatggaagatttgtgtaaactgcattgtctcagtgtggttttcctactc
cacttacctctttctcaaagagcctgcactagagtcatcacttcccattggactaagaac
attcacactttcttagaaatgaaaaagtggtgtgaatatttcatcctaagtaatataaac
atttgtgaattttggaatctgaatttaattcacctttcggacttaagtgatgaacttttg
ttgaagaatattgctttttactatgaaaatgaaaatgttgaaggcctacatttgaatttg
ggagatgtcattatgaaagattatgaacatctctggaatactgtgtcaaagttggtcaga
aagtttgctgttggaaagccatttcctctgagaacaacaaaactttcttttcttgaaaag
aatccatcaccaatcaaagatactgccaaggaaaacattcctaatttgggatttatttca
atgtcatgtgaagtggttgataagtttgttggtgactttttgacagatttgcctttctta
aagagtgatgatcctattgtaacttcactagttaaacataaggaatttgatgaacttgtg
cattggcattctcacagaccccttagtgatgattatgacaggacaaagtgtcaatttgat
gaaaaatctagagatcctcatcatcttaggtctttgcagaagtatcatctttttcaacga
ttttatgggaattcattagaatcagtctctccaaaaattgttgtaactcaagctgtcaag
ccaaagaataatttcattgcacccaagaacaaaaaggcacatgagaccaaggctgaaata
attactagagagaataaaaagaggttaattgctaaggaagaacagaaagaggagaaaaaa
tggagtgttctgtcattttctattgaggaggaaatgaaagaaaacttaaactctggaata
aagaacctggaagagtttctgaaatcatgtaaaagtaactcagtgaaatttcgagttgaa
atggtagccttaactgcctgcttgaaagcatggaaagaacattgccgaggtgaaaccaca
aaagatttaaatatagctgttcaaatgatgaaaaggatccattccttgatggaaaaatac
ccagaacttttgcaggaggcagatcagcaactcatagccagatgcctcaagtatttagga
tttgatgaattggcaagttctttatatccaacccaggttgcaagagatgacatgaagaaa
acagataaatactcaattggcattgggccagttcggtttcaactacaatacatgggccat
tatttgatacgagatgagagaaaagatccagatcccagggttcaggattttattcctgac
acatggcagcgagagctccttgatgttgtggataataatgagtcagcagtgattgtcgcc
ccaacatcctcaggcaaaacctatgcttcctactattgcatggagaaggtgctgaaggag
agcaatgaaggggtggttgtttatgttgcaccaacaaaggcccttgttaatcaagtggca
gcgactgttcagaaccgttttaccaagagcctgccaaatggtgaagctctatgtggtgtt
tttacaagggactatcgtcacgatgccctaaactgtcaggtacttattacagtgcctgcc
tgctttgaaattctgctattagctcctcatcgccaaacatgggtgaaaaggatcagatat
gttatatttgatgaggtccattgtcttggcggagaaattggagcagaagtctgggagcat
ctccttgtcatgatccgatgtccctttttggctctttcagctaccataagtaaccctcag
catctcactgagtggctacaatcagtaaaacactactggaaacaagaagacagtacaatg
ggaaaaaatactgcttttaaaagaaatgctggctgttgtgccaattctcccaaagattac
ttccaaataaaggaatcgtataaagttagacttgtgctctatggagagagatacaatgat
ttagagaagcatatatgttcaataaagcatcatgacatttattttgatcattttcaccca
tgtgccgcactaacaacggatcatattgaaaagtatggatttccttctgatcttaccctt
tcccctcgagaaaccatccagctttatgataccatgtttcagttctgggaaagctggccc
agggcccaggagttcgatccagagaaattcattcattttaagaataaaatagtcattaaa
aagttggatgctagaaaatatgaagagagcttaaaggcagaactaacaagttggatccaa
aatggccatgccgaggaggccaaaatggttctgaggaatcttagtcctgattcaggtttt
agttcagagaacatgctaagaatgtttccacttctcgttgaaaagctgaggaaaatggaa
aagttaccagcattattttttttattcagcttaggagatgtagaacaaacagctctacgt
gtgagacgttgcctggagcgagagcaagagagacaaagacctcctaaagctgataaagaa
gcctatgacataactaacaaacttcaaaaagttaaaaaatccattgagaaactaaagaca
atggatgaaaaaagccagaaaaatcccagaagagtggatcaaaggctaatatatgaaact
gaacataataatctactcaagactttagagaagaacctggaaatgcctcaggagtgcaca
tatgctaatcaaaaagcgatagacactgagactttgcagatggtgtttgatcgagtaaaa
ttcacaagaaagggtgcagagctgaaggctttggcaagaaggggtattggatatcatcac
agcgctttaaactccaaagaaaagcagttagttgagattctttttaggaaaggttttatt
agggtggtgacagctactgggacacttgctttaggaatcaacatgccttgtaaatctgtg
gtttttgctcaaaactcaatctatctggatgctttaaattacagacagatgtctgggcgt
gctggaagacgaggtcaagacctgctgggagatgtatatttctttaatattccattgccc
aaaatagaaaaactcattaaatccaatgttcctgaactgagaggacagttccctcttggc
attaccctggtcctgcgactcatgctgctggcttccaagggagatgacccagaggatgct
aaagcaaaggtgctgtcagtgctaaagcattcattgctgtccttcaaaaaacccagagtc
attaagatgttaaaactttatttcttgttttctttgcaattccttatgaaacagggctat
ttagatcaagaaggtaaaccaatggggtttgctggacttgtatcacatttgcattatcat
gagccttctaatcttgtttttgtcagttttcttgtaaaaggccttttccataatctctgt
cagccaactgggaaaggctcaagacatttttctcaagatgttatggaaaagctagtgtta
gtcttggcaaatctgtttggaagaagacctcttccagcaaagttccaggagactactgtc
aagttttgccaatcaaaggtgttccttgacgatctccctgaggattttaatgatgcttta
catgagtataacatggacgttacaaaggactttgcctccttcctactaaatgttgccaaa
ttggctgatatgaaacaggaatatcaactcccattgtcaaaaataaatttcacaggaaaa
gaatgtgagggctctgaactggtttctcatttgatgaactgcaaagaaggaagagcagct
atttctccatttgtttgtctctccggaaactctgatggtgatttgcttctaccaaatact
ccgaacgatgtccttctacgcacagttggtatcaatcacactcaggctcctgtgctgtgg
tcacagatatttgataaccaaggaagaagaatgccgcttaatgcttatgcacttgatttc
tataaacatggttccttgacaggactagtccaggacaacaggatgaatgaaggagctgct
tatgacttgttgaaagatttcgcactcaccattaaatctctcagtgtttccttgcgtgaa
ctatgtgaaaatgaagatgacaacgtggtcttagcatttgaacaattgagtgacaccttt
actgaaaaacttaatggagtttaa
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integrated database retrieval system
