Zalophus californianus (California sea lion): 113936167
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Entry
113936167 CDS
T07874
Symbol
LIG1
Name
(RefSeq) DNA ligase 1 isoform X1
KO
K10747
DNA ligase 1 [EC:
6.5.1.1
6.5.1.6
6.5.1.7
]
Organism
zca
Zalophus californianus (California sea lion)
Pathway
zca03030
DNA replication
zca03410
Base excision repair
zca03420
Nucleotide excision repair
zca03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
zca00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
113936167 (LIG1)
03410 Base excision repair
113936167 (LIG1)
03420 Nucleotide excision repair
113936167 (LIG1)
03430 Mismatch repair
113936167 (LIG1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
zca03032
]
113936167 (LIG1)
03400 DNA repair and recombination proteins [BR:
zca03400
]
113936167 (LIG1)
Enzymes [BR:
zca01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
113936167 (LIG1)
6.5.1.6 DNA ligase (ATP or NAD+)
113936167 (LIG1)
6.5.1.7 DNA ligase (ATP, ADP or GTP)
113936167 (LIG1)
DNA replication proteins [BR:
zca03032
]
Eukaryotic type
DNA Replication Elongation Factors
Other elongation factors
113936167 (LIG1)
Prokaryotic type
Elongation factors (archaeal)
Other elongation factors
113936167 (LIG1)
DNA repair and recombination proteins [BR:
zca03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Long Patch-BER factors
113936167 (LIG1)
NER (nucleotide excision repair)
Other NER factors
113936167 (LIG1)
MMR (mismatch excision repair)
Other MMR factors
113936167 (LIG1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
DNA_ligase_A_C
DDR
PucR
Motif
Other DBs
NCBI-GeneID:
113936167
NCBI-ProteinID:
XP_027474992
EnsemblRapid:
ENSZCAG00025014227
UniProt:
A0A6J2F7D0
LinkDB
All DBs
Position
17:complement(52097858..52133993)
Genome browser
AA seq
1121 aa
AA seq
DB search
MLRAEARPGPCSRDAPRGLPPLFPLYLAQRLPPNLPLSPPVTSQTRSYTHPPRAREGADR
FPSCSAGGLTLLHPFPSSLPSGRLQLPASSGRQRRRGRRPGPAPRHGPAPARQSLRANSV
APIEGCGRAPSGSGCDAQDSGARGRQEAGLYRLAGSYKNSTTVFLLVASYIIVVQNQNQE
VGVGQYRASGCRRRGGKGKGEFRPIMQRSIMSFFYPKKEGKVKKPEKETPNSVRETEPLP
KVALKERNGEVPESDSPVKRPGRKVARVLGSEGEEEDEALTPSKGQKPAPSSPQVSPPSP
VTFPESSPSPSSTSPVDISPAGIPKRRTARKQLPKRTVQDALQEQGKDESREAKRRKEGE
AEAPLESLAEPEVTQKKEAEGEGQPVTPPEHPETSSAGPLPDSTLEPEVAGKQEAREEDP
AEPPARAPKTVSSFFAPRKPATKKEGREEGPGTARQEEAKGPLDPPSYNPAKNNYHPIDD
ACWKPGQKVPYLAVARTFEKIEEVSARLRMVETLSSLLRSVVALSPPDLLPVLYLSLNRL
GPPQQGLELGVGDGVLLKAVAQATGRQLESVKAEAAEKGDVGLVAENSRSTQRLMLPPPA
LTAAGVFTKFRDIARLAGSASTARKMDIIKGLFVACRHSEARYIARALSGRLRLGLAEQS
VLAALAQAVSLTPPGQEWPPAVVDAGKGRTAEARKTWLEEQGMILKQTFCEVPDLDRIIP
VLLEHGLERLPEHCRLSPGVPLKPMLAHPTRGVSEVLKRFEEAAFTCEYKYDGQRAQIHV
LEGGEVKIFSRNQEDNTGKYPDIISRIPKIKLPSVTSFILDAEAVAWDQEKKQIQPFQVL
TTRKRKEVDAAEIQVQVCLYAFDLIYLNGESLVREPLSRRRQLLRENFVPTEGEFVFATS
LDTKDTEQIAEFLEQSVKDSCEGLMVKTLDVDATYEIAKRSHNWLKLKKDYLDGVGDTLD
LVVIGAYLGRGKRAGRYGGFLLAAYDEESEELQAICKLGTGFSDEELEEHYQRLQALVLP
TPRSYVRADGAVAPDHWLDPSAVWEVKCADLSLSPIYPAARGLVDGEKGVSLRFPRFIRV
REDKKPEEATTSAQVASLYRKQSQIQNQQGADVDSDPEDFY
NT seq
3366 nt
NT seq
+upstream
nt +downstream
nt
atgctccgcgccgaggccaggcccggcccttgctcccgggatgccccgcgcggcctcccg
cctctcttcccgctgtacctcgcgcagcggcttccaccgaatctccctctttccccgcca
gtcacttctcagacccgcagctacacccacccacccagagcgagggaaggcgcggaccgt
ttcccatcgtgctctgcgggagggctcaccctacttcacccctttcctagtagcctcccg
tccgggagactacaactcccagcgtcctccggaaggcagcggcggcgcggacgacgcccg
ggccccgcccctcggcacggccccgcccccgcccgccaaagtctgcgcgcgaattccgtg
gcgccaattgagggctgcggtcgggcgccgagcggttccgggtgtgacgcgcaggacagt
ggcgcgcggggccggcaagaggcaggattatacagacttgccggaagttataaaaatagt
acaactgtcttcctcctggtggcatcttatataatcgtagtccagaatcaaaaccaggaa
gtcggcgttggacaataccgagcatctggctgcagacgacgaggaggaaaggggaaggga
gaattccgacccatcatgcagcggagtatcatgtcatttttctaccccaagaaggagggc
aaagtgaaaaagccagagaaggagacccccaacagcgtcagagagacagagccacttcca
aaggtggcactgaaggagcgcaatggagaggtgcctgagagcgattctccagtgaagagg
ccagggcggaaggtggcccgggtcctgggcagtgaaggggaagaggaggacgaagccctc
acgccctccaaaggccagaagcctgcccccagctctccacaagtctcccctcccagccct
gtcacatttcccgagagcagcccctccccctccagcacctctcctgtggacatctcccca
gcagggatcccaaagcggcgcacagctcggaagcagcttcctaagcggacggtacaggat
gccctgcaggagcagggcaaggacgagagcagagaggccaagaggaggaaggagggagaa
gctgaggccccactggaaagcctcgcggagcctgaagtgacccaaaagaaagaagcagaa
ggggagggccagcccgtgacaccccctgagcacccagagacctcctcagcagggcccctg
ccagacagcaccttggagcctgaggtggcggggaagcaggaggctcgagaggaagacccg
gccgagccgcccgccagagcgcccaagacggtcagcagcttcttcgccccccggaaaccg
gcaaccaagaaagaagggagagaagagggacctggcacagcaagacaggaagaggccaag
ggacccctggacccccccagctacaatcctgccaagaacaactaccatcccatcgacgac
gcgtgctggaagccaggccagaaggtcccttacctggctgtggcccggacatttgagaag
attgaggaggtttctgctcggctccggatggtggagacgctgagcagcttgctgcgttcc
gtggtggccctgtcacctccagacctcctccccgtcctctacctcagcctcaaccgcctc
gggccaccgcagcagggcctggagcttggcgtcggtgacggcgtcctcctcaaggcggtg
gcccaggccacagggcggcagctggagtctgtcaaggccgaggcggctgagaagggcgac
gtggggttggtggccgagaacagccgcagcacccagagactcatgctgcccccacctgct
ctcactgccgccggggtcttcaccaagttccgggacatcgcccggctggccggcagtgct
tccacagccaggaagatggacatcatcaaaggcctctttgttgcctgccgccactcagaa
gcccgatacatcgccagagccctgagcggacggctgcgcctcgggctggcagagcagtcg
gtgctggccgccctcgcccaggccgtgagcctcacgcccccaggccaagagtggcccccg
gccgtcgtggatgctgggaagggcaggacagcggaggcccgaaagacgtggctagaggag
caaggcatgatcctgaagcagacgttctgcgaggtgcccgacctggaccggatcatccct
gtgctgctggagcacggcctggagcgcctcccggagcactgcaggctgagcccaggggtt
cccctgaaaccgatgctggcgcaccccacccgcggtgtcagcgaggtcctgaaacgcttt
gaggaggccgctttcacctgcgagtacaaatacgacgggcagagggcacagatccacgtc
ctggaaggcggggaggtgaagatcttcagcaggaatcaggaagacaataccggaaagtac
ccggacatcatcagccgcatccccaagattaaactcccgtcagtcacatccttcatcctg
gacgcggaagccgtggcttgggaccaggaaaagaagcagatccagccattccaagtgctc
accacccgcaaacgcaaggaggtggatgcggcagagatccaggtgcaggtgtgtctgtat
gccttcgacctcatctacctcaatggagagtccctggtgcgtgagccgctttcccgacgc
cggcagcttctccgggagaacttcgtgccgacagagggcgagtttgtcttcgccacctcc
ctggacaccaaggacacagagcagatcgccgagttcctggagcagtctgtgaaagactcc
tgcgaggggctgatggtgaaaaccctggacgtcgatgccacctacgagatcgccaagaga
tcccacaactggctgaagctgaagaaggactacctcgatggtgtgggcgacaccctggac
ctcgtggtgatcggcgcctacctgggccgtggcaagcgggccggccgctatgggggcttc
ctgctggctgcctacgacgaggagagtgaggagctccaggccatatgcaagctcggaact
ggcttcagtgacgaggagctggaggagcattaccagaggctccaggccctggtgctgccc
accccacgctcttacgtccgggcggacggcgccgtggcccccgaccactggctggacccc
agtgccgtgtgggaggtgaaatgtgccgatctgtccctgtcccccatctaccctgctgcc
cggggcctggtggatggtgagaagggggtctcccttcgcttccctcgctttatccgcgtc
cgtgaagacaagaagcccgaggaggccaccaccagtgcccaggtggcctccctgtacagg
aagcagagtcagattcagaaccagcagggcgcggacgtggactccgacccagaagatttc
tactag
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integrated database retrieval system
